Ecosyste.ms: Issues

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GitHub / nipreps/eddymotion issues and pull requests

#129 - ENH: Add newer Python versions to package testing

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 2 comments

#128 - MAINT: Migrate to PEP517/518 packaging

Pull Request - State: closed - Opened by esavary 7 months ago - 1 comment

#127 - Migrate packaging to PEP517/8

Issue - State: closed - Opened by oesteban 10 months ago - 5 comments
Labels: enhancement

#126 - How can I use eddymotion for my own dMRI data?

Issue - State: open - Opened by jrf1024 over 1 year ago
Labels: documentation

#125 - Update governance/maintenance documents to the latest nipreps/GOVERNANCE proposal

Issue - State: open - Opened by oesteban over 1 year ago
Labels: enhancement

#124 - Data utils

Pull Request - State: closed - Opened by teresamg over 1 year ago - 4 comments

#123 - Adds carpet_plot function

Pull Request - State: closed - Opened by teresamg over 1 year ago - 1 comment

#122 - Changed em_affines from Affine object to matrix with preallocation

Pull Request - State: closed - Opened by teresamg over 1 year ago - 4 comments

#121 - MAINT: Rotate CircleCI secrets and setup up org-level context

Pull Request - State: closed - Opened by oesteban over 1 year ago

#120 - MAINT: Pin Python >= 3.8

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#119 - Update contact information for @dpys and setup.cfg -> nipreps

Pull Request - State: closed - Opened by dPys almost 2 years ago

#118 - Using a sequence of "b0" models doesn't currently work

Issue - State: open - Opened by arokem almost 2 years ago - 1 comment

#117 - FIX: Update __init__.py to include PETModel

Pull Request - State: closed - Opened by mnoergaard almost 2 years ago

#116 - ENH: Data manipulations to facilitate modeling and registration: smoothing & subsampling

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 3 comments

#115 - ENH: Refactor package structure

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#114 - Fix masking add composability

Pull Request - State: closed - Opened by dPys almost 2 years ago - 2 comments

#113 - Track model fit formally with an object member variable

Issue - State: closed - Opened by oesteban almost 2 years ago

#112 - ENH: PET uptake model

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 6 comments

#110 - ENH: Add SHORE model

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#109 - ENH: Model building refactor

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#108 - Spatial smoothing & disallowing ANTs' subsamplings/smoothings

Issue - State: open - Opened by oesteban almost 2 years ago - 1 comment

#107 - Show a big-fat warning when a brain mask is not provided

Issue - State: open - Opened by oesteban almost 2 years ago - 2 comments

#106 - MAINT: Do not install ants with conda (CircleCI)

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#105 - ENH: Allow mix-and-matching of models

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#104 - DOC: Fix documentation build

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#103 - FIX: Implement parallelization with joblib & processes

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#102 - FIX: Revise ``antsRegistration`` arguments (just FYI)

Pull Request - State: closed - Opened by oesteban almost 2 years ago

#101 - Multi-threaded execution is actually slower (checked on DKI model only)

Issue - State: closed - Opened by oesteban almost 2 years ago - 4 comments

#100 - FIX: Revising parallel execution and related housekeeping

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 2 comments

#99 - CircleCI not running

Issue - State: closed - Opened by arokem almost 2 years ago - 1 comment

#98 - ENH: Outsource leave-one-out splitter so it can be used across data types

Pull Request - State: closed - Opened by teresamg almost 2 years ago - 8 comments

#97 - FIX: Stop using overly complicated asyncio for managing ThreadPoolExecutors

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#96 - ENH: Improvements to the estimator

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 5 comments

#95 - `DWI` objects equality is broken

Issue - State: closed - Opened by arokem almost 2 years ago - 1 comment

#94 - The issues templates options are slightly confusing

Issue - State: closed - Opened by arokem almost 2 years ago - 1 comment

#93 - Membership request

Issue - State: closed - Opened by arokem almost 2 years ago - 1 comment

#92 - FIX: Housekeeping of the data loader function

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 1 comment

#91 - ENH: Add ``FullDKIModel''

Pull Request - State: closed - Opened by oesteban almost 2 years ago - 5 comments

#90 - Replace registration to use ANTsPy instead of Nipype

Pull Request - State: closed - Opened by teresamg about 2 years ago - 2 comments

#89 - Replace nipype ants interfaces with antspy?

Issue - State: open - Opened by arokem about 2 years ago - 1 comment

#88 - MAINT: Initiate CircleCI's config file

Pull Request - State: closed - Opened by oesteban about 2 years ago - 1 comment

#87 - FIX: Generate temporary H5 cache path anew with every new instance of ``DWI``

Pull Request - State: closed - Opened by oesteban about 2 years ago - 1 comment

#85 - FIX: Integration test with B0 (trivial) model

Pull Request - State: closed - Opened by oesteban about 2 years ago - 2 comments

#84 - FIX: Miscelaneous revisions to make tests execute properly

Pull Request - State: closed - Opened by oesteban over 2 years ago - 4 comments

#83 - Just added myself to contributors

Pull Request - State: closed - Opened by GalKepler over 2 years ago

#82 - MAINT: Reduce jobs in contrib GHA

Pull Request - State: closed - Opened by oesteban over 2 years ago

#81 - What are the contribution tests checking?

Issue - State: closed - Opened by oesteban over 2 years ago - 2 comments

#80 - MAINT: Create documentation infrastructure

Pull Request - State: closed - Opened by oesteban over 2 years ago

#79 - FIX: Test structure / pytest & fixtures

Pull Request - State: closed - Opened by oesteban over 2 years ago - 4 comments

#78 - ENH: Add GHAs testing PEP518 packaging

Pull Request - State: closed - Opened by oesteban over 2 years ago

#77 - FIX: Finalize ``src/`` refactor

Pull Request - State: closed - Opened by oesteban over 2 years ago

#76 - Better document the model factory, especifically the fit method

Issue - State: open - Opened by oesteban over 2 years ago
Labels: documentation

#75 - A small patch for the rebasing of the main directory under src

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 5 comments

#74 - Rebasing the package under an src/ directory

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 2 comments

#73 - Cut a release with the advances made in the hackathon

Issue - State: closed - Opened by oesteban over 2 years ago - 1 comment

#72 - MAINT: Make effective the pre-commit hooks

Pull Request - State: closed - Opened by oesteban over 2 years ago

#71 - Github Actions

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 1 comment

#70 - Platform for documentation

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 2 comments

#69 - Pre commit hooks

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 5 comments

#68 - pre-commit hooks & Github workflows

Issue - State: closed - Opened by GalKepler over 2 years ago

#67 - Restructuring the package

Pull Request - State: closed - Opened by GalKepler over 2 years ago - 8 comments

#66 - PET uptake model

Issue - State: closed - Opened by oesteban over 2 years ago - 3 comments
Labels: models

#65 - Generate documentation: eddy and head motion fundamentals

Issue - State: closed - Opened by oesteban over 2 years ago
Labels: documentation

#64 - Start documentation building & API documentation

Issue - State: closed - Opened by oesteban over 2 years ago
Labels: documentation

#63 - Restructuring this package to fit newer python packaging standard

Issue - State: closed - Opened by GalKepler over 2 years ago - 6 comments

#62 - FIX: Correct typo in `omp_nthreads`

Pull Request - State: closed - Opened by josephmje almost 3 years ago

#61 - [ENH] Generalize asyncio event_loop routines for DTI model by exposin…

Pull Request - State: closed - Opened by dPys almost 3 years ago - 9 comments

#60 - ENH: Adds Sparse Fascicle and Gaussian Process models

Pull Request - State: closed - Opened by josephmje almost 3 years ago - 2 comments

#58 - ENH : Add tests

Pull Request - State: closed - Opened by celprov almost 3 years ago - 1 comment

#57 - ENH : Add average DW model

Pull Request - State: closed - Opened by celprov almost 3 years ago - 3 comments

#56 - Unit tests of the average DW model

Issue - State: closed - Opened by oesteban almost 3 years ago

#55 - Repository is HUGE

Issue - State: closed - Opened by oesteban almost 3 years ago - 15 comments

#54 - Question for experts about eddy

Issue - State: closed - Opened by oesteban about 3 years ago - 1 comment
Labels: question

#53 - Implement Gaussian Process as a model

Issue - State: open - Opened by oesteban about 3 years ago - 2 comments
Labels: effort: high, impact: high, models

#52 - ECC/HMC alternative to FSL's eddy

Issue - State: closed - Opened by oesteban over 4 years ago - 1 comment

#51 - ENH: Sophistication of ``AverageDWModel``

Pull Request - State: closed - Opened by oesteban over 3 years ago - 1 comment

#50 - enh : Add regression to the mean model

Pull Request - State: closed - Opened by celprov over 3 years ago - 2 comments

#49 - Reportlet - Head-Motion+Eddy correction

Issue - State: open - Opened by oesteban over 3 years ago - 1 comment
Labels: good first issue, effort: medium, impact: high, visualization

#48 - Validation with FiberFox - both hm and eddy

Issue - State: open - Opened by oesteban over 3 years ago
Labels: effort: high, impact: high, validation

#47 - Validation with FiberFox - eddy only tests

Issue - State: open - Opened by oesteban over 3 years ago
Labels: effort: high, impact: high, validation

#46 - Validation with FiberFox - head-motion only tests

Issue - State: open - Opened by oesteban over 3 years ago
Labels: effort: high, impact: high, validation

#45 - Stacked diffusion models?

Issue - State: open - Opened by dPys over 3 years ago

#44 - ENH: Add zenodo badge to README

Pull Request - State: closed - Opened by oesteban over 3 years ago

#43 - Rename proposal - EddyMotionCorrection -> eddymotion

Issue - State: closed - Opened by oesteban over 3 years ago - 2 comments

#42 - Fieldmap integration

Issue - State: open - Opened by oesteban over 3 years ago

#41 - Implement the ``AverageDWModel`` we propose in the nipreps-book

Issue - State: closed - Opened by oesteban over 3 years ago
Labels: good first issue, effort: low, impact: medium, models

#40 - Integration and validation tests with b=0 only

Issue - State: closed - Opened by oesteban over 3 years ago - 4 comments
Labels: good first issue, effort: medium, impact: high, validation

#39 - Implement the Bayesian Ridge solver

Issue - State: open - Opened by oesteban over 3 years ago

#38 - Port SHORE model back from the legacy branch

Issue - State: open - Opened by oesteban over 3 years ago - 9 comments

#37 - Port SFM model back from the legacy branch

Issue - State: open - Opened by oesteban over 3 years ago - 11 comments

#36 - DIPY's gradients tables -- scanner or voxel coordinates?

Issue - State: open - Opened by oesteban over 3 years ago - 5 comments
Labels: bug

#34 - ENH: Parallelize DTI model fit and prediction

Pull Request - State: closed - Opened by sebastientourbier over 3 years ago - 16 comments
Labels: effort: medium, impact: high, models

#33 - FIX: Bad argument mapping in the new plot_gradients

Pull Request - State: closed - Opened by oesteban over 3 years ago

#32 - ENH: Add general crediting system

Pull Request - State: closed - Opened by oesteban over 3 years ago - 1 comment

#28 - ENH: Fix the DWI model to work like the DTI model

Pull Request - State: closed - Opened by oesteban over 3 years ago

#23 - ENH: Allow passing in compression parameters in to_filename

Pull Request - State: closed - Opened by oesteban over 3 years ago

#19 - Question: affine constraints for eddy currents

Issue - State: closed - Opened by oesteban over 3 years ago