Ecosyste.ms: Issues

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GitHub / nipreps/eddymotion issues and pull requests

#229 - ENH: Transition CI to GHA

Pull Request - State: closed - Opened by jhlegarreta 7 days ago - 1 comment

#228 - ENH: Add a script to plot the signal estimated by the GP

Pull Request - State: open - Opened by jhlegarreta 7 days ago - 1 comment

#227 - ENH: Add GP error analysis experiment script

Pull Request - State: open - Opened by jhlegarreta 8 days ago - 3 comments

#226 - Move testing to GHA

Issue - State: closed - Opened by oesteban 12 days ago

#225 - WIP: Fast head-motion estimation for DWI

Pull Request - State: open - Opened by oesteban about 1 month ago

#224 - MAINT: Move image registration into its own submodule

Pull Request - State: closed - Opened by oesteban about 1 month ago

#223 - MAINT: Move testfile to proper location and use fixture

Pull Request - State: closed - Opened by oesteban about 1 month ago

#222 - MAINT: Remove unnecessary module

Pull Request - State: closed - Opened by oesteban about 1 month ago

#221 - FIX: Generalized model structure

Pull Request - State: closed - Opened by oesteban about 1 month ago - 3 comments

#220 - MAINT: Install *ANTs* through conda (mamba)

Pull Request - State: closed - Opened by oesteban about 1 month ago

#218 - DOC: Update covariance function vs. empirical notebook

Pull Request - State: closed - Opened by oesteban 3 months ago - 1 comment

#217 - ENH: Use the attenuation distance to plot the DWI signal

Pull Request - State: open - Opened by jhlegarreta 3 months ago - 1 comment

#216 - ENH: Base implementation for our GP kernels

Pull Request - State: closed - Opened by oesteban 3 months ago - 2 comments

#215 - ENH: Add observed covariance from HCP data to cov notebook

Pull Request - State: closed - Opened by jhlegarreta 3 months ago - 7 comments

#214 - ENH: Add dMRI covariance model notebook

Pull Request - State: closed - Opened by jhlegarreta 3 months ago - 3 comments

#213 - ENH: Add single-shell covariance models

Pull Request - State: closed - Opened by jhlegarreta 3 months ago - 2 comments

#211 - ENH: Remove redundant `is_fitted` overrides in model classes

Pull Request - State: closed - Opened by jhlegarreta 4 months ago

#210 - STYLE: Set a seed for random number generation reproducibility

Pull Request - State: closed - Opened by jhlegarreta 4 months ago

#209 - DOC: Remove optional values in docstring

Pull Request - State: closed - Opened by jhlegarreta 4 months ago

#208 - ENH: Add decimator and gaussian filter

Pull Request - State: open - Opened by oesteban 4 months ago

#207 - ENH: Outsource data filtering from estimator into its own module

Pull Request - State: closed - Opened by oesteban 4 months ago

#206 - Import in `BaseModel.__init__` method instead of at the top of the file

Issue - State: open - Opened by jhlegarreta 4 months ago - 1 comment
Labels: bug

#205 - DOC: Fix `ModelNotFitterError` class docstring

Pull Request - State: closed - Opened by jhlegarreta 4 months ago

#204 - ENH: Custom Optimizers for Hyperparameter Optimization

Pull Request - State: open - Opened by esavary 4 months ago - 4 comments

#203 - ENH: add spherical model kernel

Pull Request - State: open - Opened by esavary 4 months ago - 1 comment

#202 - ENH: Add gaussian process DWI signal representation notebook

Pull Request - State: open - Opened by jhlegarreta 4 months ago - 14 comments

#201 - ENH: Add squared exponential covariance kernel

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#200 - ENH: Add gradient encoding direction angle computation utils

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 6 comments

#199 - ENH: Add positive definite matrix check util method

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 3 comments

#198 - ENH: Add DWI shell detection utils

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#197 - Q: Why our releases jump from 0.1.4 to 0.1.15?

Issue - State: closed - Opened by oesteban 5 months ago - 5 comments

#194 - Update lovo splitter to accommodate other data objects than DWI

Issue - State: open - Opened by mnoergaard 5 months ago
Labels: enhancement

#192 - ENH: Remove carpet plot method from `eddymotion`

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 1 comment

#191 - Update pet_model branch to align with main branch

Pull Request - State: closed - Opened by mnoergaard 5 months ago

#190 - ENH: Use img shields license badge and point to file

Pull Request - State: closed - Opened by jhlegarreta 5 months ago

#189 - ENH: Call the DWI plot method from nireports

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 3 comments

#188 - ENH: Implement Gaussian Process

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 8 comments

#187 - ENH: Call the gradient plot method from `nireports`

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 2 comments

#186 - Reorganize the testing module

Issue - State: open - Opened by jhlegarreta 5 months ago
Labels: enhancement

#185 - DOC: Fix typo in `ModelFactory` docstring

Pull Request - State: closed - Opened by jhlegarreta 5 months ago

#184 - ENH: Add CLI entry point test

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 6 comments

#183 - ENH: Add test for the CLI parser

Pull Request - State: closed - Opened by jhlegarreta 5 months ago

#182 - MNT: Drop local version to play nicely with test.pypi.org

Pull Request - State: closed - Opened by effigies 5 months ago - 1 comment

#181 - Hide model fit progress bar?

Issue - State: open - Opened by oesteban 5 months ago - 4 comments

#180 - ANN: nipreps/eddymotion team created for maintainers

Issue - State: open - Opened by effigies 5 months ago - 1 comment

#179 - ENH: Automated Package Building and Deployment

Pull Request - State: closed - Opened by esavary 5 months ago - 12 comments

#178 - Automated package distribution releases using GitHub Actions CI/CD workflows

Issue - State: closed - Opened by esavary 6 months ago
Labels: enhancement

#177 - ENH: Bump CircleCI docker image

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#176 - ENH: Make models inherit from base model

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 6 comments

#175 - DOC: Fix grammar in model factory docstring

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 2 comments

#174 - Should parallelization be handled upstream?

Issue - State: open - Opened by arokem 6 months ago - 4 comments

#173 - STYLE: Rename estimator method to honor its purpose/use

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 1 comment

#172 - ENH: Require the iterables in a zip call to have equal length

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#171 - ENH: Require Sphinx greater or equal 7.2

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 12 comments

#170 - Allow initializing the DWI object with "bvals"/"bvecs"

Issue - State: closed - Opened by arokem 6 months ago - 2 comments

#169 - DOC: Documentation for Eddymotion Python Module Usage

Pull Request - State: closed - Opened by esavary 6 months ago - 6 comments

#168 - DOC: Documentation for Eddymotion Python Module Usage

Pull Request - State: closed - Opened by esavary 6 months ago - 2 comments

#167 - ENH: Adopt the NiPreps author update maintenance script

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#166 - ENH: Check if `fit` has been called prior to `predict`

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 4 comments

#165 - ENH: Call the outsourced random volume index iterator in `estimator`

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 3 comments

#164 - DOC: Remove unnamed return parameter from docstring

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#163 - ENH: Require the iterables in a `zip` call to have equal length

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 1 comment

#162 - ENH: Remove unused `tmp_path` parameter from test

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#161 - ENH: Implement DWI equality explicitly

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 2 comments

#160 - FIX: Set random seed in registration test

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 1 comment

#159 - DOC: Add CircleCI status badge to README

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#158 - ENH: Drop support for Python 3.8 and 3.9

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 3 comments

#157 - ENH: CLI Implementation for Eddymotion

Pull Request - State: closed - Opened by esavary 6 months ago - 3 comments

#156 - Implement Command-Line Interface (CLI)

Issue - State: closed - Opened by esavary 6 months ago
Labels: enhancement

#155 - test_ANTs_config_b0 failing on and off

Issue - State: closed - Opened by jhlegarreta 6 months ago - 2 comments
Labels: bug

#154 - STY: fix style errors

Pull Request - State: closed - Opened by esavary 6 months ago

#153 - Drafting a short-term roadmap

Issue - State: open - Opened by oesteban 6 months ago - 1 comment

#152 - Release 0.1.15

Issue - State: closed - Opened by oesteban 6 months ago - 13 comments

#151 - Style errors introduced with PR merge

Issue - State: closed - Opened by oesteban 6 months ago

#150 - ENH: Indexes sorting options

Pull Request - State: closed - Opened by esavary 6 months ago - 7 comments

#149 - ENH: Simplify `eddymotion.estimator.EddyMotionEstimator.fit`

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 2 comments

#148 - LOGO split - strategies WIP Do not merge

Pull Request - State: closed - Opened by esavary 6 months ago

#147 - STYLE: Format the code base style

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 2 comments

#146 - Drop pre-commit config and hook?

Issue - State: open - Opened by oesteban 6 months ago - 2 comments

#145 - HDF5-backed data structure

Issue - State: open - Opened by oesteban 6 months ago - 7 comments

#144 - ENH: Refactor code linter and formatter dependencies

Pull Request - State: closed - Opened by jhlegarreta 6 months ago - 6 comments

#143 - ENH: Add Python 3.12 to project classifiers

Pull Request - State: closed - Opened by jhlegarreta 6 months ago

#142 - C901 Exception Removal

Issue - State: closed - Opened by esavary 6 months ago

#140 - Limit Python versions that are supported?

Issue - State: closed - Opened by arokem 7 months ago - 3 comments

#139 - CI: replace flake8 by ruff check

Pull Request - State: closed - Opened by esavary 7 months ago - 8 comments

#138 - DOC: Add status badges to `README` file

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 5 comments

#137 - ENH: Remove unnecessary `docs/requirements.txt`

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#136 - BUG: Fix Sphinx documentation configuration file

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#135 - DOC: Miscellaneous documentation fixes

Pull Request - State: closed - Opened by jhlegarreta 7 months ago

#134 - ENH: Remove unused parameter from method prototype

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 5 comments

#133 - ENH: Define instance attributes in `__init__` method

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 2 comments

#132 - ENH: Avoid using `pytest` `tmpdir` fixture as variable name

Pull Request - State: closed - Opened by jhlegarreta 7 months ago

#131 - DOC: Add missing references in `README` file

Pull Request - State: closed - Opened by jhlegarreta 7 months ago - 1 comment

#130 - ENH: Fix GitHub workflow actions warnings linked to `Node.js`

Pull Request - State: closed - Opened by jhlegarreta 7 months ago