Ecosyste.ms: Issues

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GitHub / nipreps/eddymotion issues and pull requests

#265 - DOC: Fix installation documentation Python version

Pull Request - State: closed - Opened by jhlegarreta 2 months ago

#264 - STYLE: Rename tool to `NiFreeze`

Pull Request - State: closed - Opened by jhlegarreta 2 months ago - 3 comments

#263 - DOC: Add `__init__` documentation to class documentation

Pull Request - State: closed - Opened by jhlegarreta 2 months ago - 2 comments

#262 - DOC: Include special members in documentation

Pull Request - State: closed - Opened by jhlegarreta 2 months ago - 3 comments

#261 - ENH: Implement squared exponential covariance function

Pull Request - State: open - Opened by jhlegarreta 2 months ago - 2 comments

#260 - STYLE: Make Kriging hyperparameter property naming consistent

Pull Request - State: closed - Opened by jhlegarreta 2 months ago - 3 comments

#259 - DOC: Miscellaneous `gpr` module documentation fixes

Pull Request - State: closed - Opened by jhlegarreta 2 months ago - 1 comment

#258 - DOC: Fix cut passages from `README` in documentation index file

Pull Request - State: closed - Opened by jhlegarreta 3 months ago - 7 comments

#257 - ENH: Add an additional environment to `tox` to run notebooks

Pull Request - State: open - Opened by jhlegarreta 3 months ago - 4 comments

#256 - ENH: Add bold realignment notebook (ISMRM'25 Experiment 2)

Pull Request - State: closed - Opened by oesteban 3 months ago - 4 comments

#255 - ENH: Add GP estimation notebook

Pull Request - State: closed - Opened by jhlegarreta 3 months ago - 3 comments

#254 - FIX: ``plot_gradients()`` requires transposing gradients

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#252 - ENH: Rename ``eddymotion._sklearn`` -> ``eddymotion.gpr``

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#251 - FIX: Typo in argparse's argument name

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#250 - ENH: GP hyperparameter selection by cross-validation

Pull Request - State: open - Opened by oesteban 4 months ago - 3 comments

#249 - ENH: Improve CLI of the dwi/error experiment

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#248 - ENH: Miscellaneous improvements to the scripts

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#247 - ENH: Allow simulating multi-fiber voxels

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 1 comment

#247 - ENH: Allow simulating multi-fiber voxels

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 1 comment

#246 - STYLE: Prefer using "Copyright" over the symbol in file headers

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 3 comments

#246 - STYLE: Prefer using "Copyright" over the symbol in file headers

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 3 comments

#245 - ENH: Allow simulating multi-fiber voxels

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#244 - ENH: Improving GP models

Pull Request - State: closed - Opened by oesteban 4 months ago - 8 comments

#244 - ENH: Improving GP models

Pull Request - State: closed - Opened by oesteban 4 months ago - 8 comments

#243 - ENH: Add helper functions for DWI signal value visualization

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 3 comments

#242 - DOC: Miscellaneous docstring fixes

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 1 comment

#241 - ENH: Add a new ``eddymotion.viz`` module

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#240 - MAINT: Do not run unit tests in all platforms

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#239 - ENH: Add a testing module to keep convenience tooling

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#238 - DOC: Fix documentation build

Pull Request - State: closed - Opened by oesteban 4 months ago - 1 comment

#237 - ENH: Refactor of GP regression models

Pull Request - State: closed - Opened by oesteban 4 months ago - 2 comments

#236 - MAINT: Move test data files to a dedicated folder inside `test` folder

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 4 comments

#235 - DOC: Improve the copyright notice information in the `LICENSE` file

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#234 - MAINT: Adopt `tox` for testing environment configuration

Pull Request - State: closed - Opened by jhlegarreta 4 months ago - 2 comments

#233 - Relocate actual data in `data` module to elsewhere

Issue - State: closed - Opened by jhlegarreta 5 months ago
Labels: enhancement

#232 - MAINT: Revert addition of tox

Pull Request - State: closed - Opened by oesteban 5 months ago - 5 comments

#231 - Decision on adopting type hints

Issue - State: open - Opened by jhlegarreta 5 months ago - 3 comments
Labels: documentation

#230 - MAINT: Revision of GHA migration

Pull Request - State: closed - Opened by oesteban 5 months ago - 1 comment

#229 - ENH: Transition CI to GHA

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 1 comment

#228 - ENH: Add a script to plot the signal estimated by the GP

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 4 comments

#227 - ENH: Add GP error analysis experiment script

Pull Request - State: closed - Opened by jhlegarreta 5 months ago - 15 comments

#226 - Move testing to GHA

Issue - State: closed - Opened by oesteban 5 months ago

#225 - ENH: Fast head-motion estimation for DWI

Pull Request - State: closed - Opened by oesteban 6 months ago - 4 comments

#224 - MAINT: Move image registration into its own submodule

Pull Request - State: closed - Opened by oesteban 6 months ago

#223 - MAINT: Move testfile to proper location and use fixture

Pull Request - State: closed - Opened by oesteban 6 months ago

#222 - MAINT: Remove unnecessary module

Pull Request - State: closed - Opened by oesteban 6 months ago

#221 - FIX: Generalized model structure

Pull Request - State: closed - Opened by oesteban 6 months ago - 3 comments

#220 - MAINT: Install *ANTs* through conda (mamba)

Pull Request - State: closed - Opened by oesteban 6 months ago

#218 - DOC: Update covariance function vs. empirical notebook

Pull Request - State: closed - Opened by oesteban 7 months ago - 1 comment

#217 - ENH: Use the attenuation distance to plot the DWI signal

Pull Request - State: open - Opened by jhlegarreta 8 months ago - 2 comments

#216 - ENH: Base implementation for our GP kernels

Pull Request - State: closed - Opened by oesteban 8 months ago - 2 comments

#215 - ENH: Add observed covariance from HCP data to cov notebook

Pull Request - State: closed - Opened by jhlegarreta 8 months ago - 7 comments

#214 - ENH: Add dMRI covariance model notebook

Pull Request - State: closed - Opened by jhlegarreta 8 months ago - 3 comments

#213 - ENH: Add single-shell covariance models

Pull Request - State: closed - Opened by jhlegarreta 8 months ago - 2 comments

#211 - ENH: Remove redundant `is_fitted` overrides in model classes

Pull Request - State: closed - Opened by jhlegarreta 8 months ago

#210 - STYLE: Set a seed for random number generation reproducibility

Pull Request - State: closed - Opened by jhlegarreta 8 months ago

#209 - DOC: Remove optional values in docstring

Pull Request - State: closed - Opened by jhlegarreta 8 months ago

#208 - ENH: Add decimator and gaussian filter

Pull Request - State: open - Opened by oesteban 8 months ago

#207 - ENH: Outsource data filtering from estimator into its own module

Pull Request - State: closed - Opened by oesteban 8 months ago

#206 - Import in `BaseModel.__init__` method instead of at the top of the file

Issue - State: open - Opened by jhlegarreta 8 months ago - 1 comment
Labels: bug

#205 - DOC: Fix `ModelNotFitterError` class docstring

Pull Request - State: closed - Opened by jhlegarreta 8 months ago

#204 - ENH: Custom Optimizers for Hyperparameter Optimization

Pull Request - State: closed - Opened by esavary 9 months ago - 5 comments

#203 - ENH: add spherical model kernel

Pull Request - State: closed - Opened by esavary 9 months ago - 2 comments

#202 - ENH: Add gaussian process DWI signal representation notebook

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 15 comments

#201 - ENH: Add squared exponential covariance kernel

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 2 comments

#200 - ENH: Add gradient encoding direction angle computation utils

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 6 comments

#199 - ENH: Add positive definite matrix check util method

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 3 comments

#198 - ENH: Add DWI shell detection utils

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 2 comments

#197 - Q: Why our releases jump from 0.1.4 to 0.1.15?

Issue - State: closed - Opened by oesteban 9 months ago - 5 comments

#194 - Update lovo splitter to accommodate other data objects than DWI

Issue - State: open - Opened by mnoergaard 9 months ago
Labels: enhancement

#192 - ENH: Remove carpet plot method from `eddymotion`

Pull Request - State: closed - Opened by jhlegarreta 9 months ago - 1 comment

#191 - Update pet_model branch to align with main branch

Pull Request - State: closed - Opened by mnoergaard 9 months ago

#190 - ENH: Use img shields license badge and point to file

Pull Request - State: closed - Opened by jhlegarreta 9 months ago

#189 - ENH: Call the DWI plot method from nireports

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 3 comments

#188 - ENH: Implement Gaussian Process

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 8 comments

#187 - ENH: Call the gradient plot method from `nireports`

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 2 comments

#186 - Reorganize the testing module

Issue - State: open - Opened by jhlegarreta 10 months ago
Labels: enhancement

#185 - DOC: Fix typo in `ModelFactory` docstring

Pull Request - State: closed - Opened by jhlegarreta 10 months ago

#184 - ENH: Add CLI entry point test

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 6 comments

#183 - ENH: Add test for the CLI parser

Pull Request - State: closed - Opened by jhlegarreta 10 months ago

#182 - MNT: Drop local version to play nicely with test.pypi.org

Pull Request - State: closed - Opened by effigies 10 months ago - 1 comment

#181 - Hide model fit progress bar?

Issue - State: open - Opened by oesteban 10 months ago - 4 comments

#180 - ANN: nipreps/eddymotion team created for maintainers

Issue - State: closed - Opened by effigies 10 months ago - 2 comments

#179 - ENH: Automated Package Building and Deployment

Pull Request - State: closed - Opened by esavary 10 months ago - 12 comments

#178 - Automated package distribution releases using GitHub Actions CI/CD workflows

Issue - State: closed - Opened by esavary 10 months ago
Labels: enhancement

#177 - ENH: Bump CircleCI docker image

Pull Request - State: closed - Opened by jhlegarreta 10 months ago

#176 - ENH: Make models inherit from base model

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 6 comments

#175 - DOC: Fix grammar in model factory docstring

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 2 comments

#174 - Should parallelization be handled upstream?

Issue - State: open - Opened by arokem 10 months ago - 4 comments

#173 - STYLE: Rename estimator method to honor its purpose/use

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 1 comment

#172 - ENH: Require the iterables in a zip call to have equal length

Pull Request - State: closed - Opened by jhlegarreta 10 months ago

#171 - ENH: Require Sphinx greater or equal 7.2

Pull Request - State: closed - Opened by jhlegarreta 10 months ago - 12 comments

#170 - Allow initializing the DWI object with "bvals"/"bvecs"

Issue - State: closed - Opened by arokem 10 months ago - 2 comments

#169 - DOC: Documentation for Eddymotion Python Module Usage

Pull Request - State: closed - Opened by esavary 10 months ago - 6 comments

#168 - DOC: Documentation for Eddymotion Python Module Usage

Pull Request - State: closed - Opened by esavary 10 months ago - 2 comments