Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nipreps/dmriprep issues and pull requests
#204 - gen_eddy_files failed to run
Issue -
State: open - Opened by LangFiL 7 months ago
Labels: bug
#203 - FIX: typo in omp_threads
Pull Request -
State: closed - Opened by celprov about 1 year ago
#202 - [WARNING] Citeproc: citation eddy not found
Issue -
State: open - Opened by celprov about 1 year ago
Labels: bug
#201 - FIX: fix typo that prevented to ignore fieldmaps
Pull Request -
State: closed - Opened by celprov about 1 year ago
- 1 comment
#200 - No dwi derivatives in output directory
Issue -
State: closed - Opened by maryjis over 1 year ago
- 1 comment
Labels: bug
#198 - The tutorial of dMRIprep singularity using was not work
Issue -
State: closed - Opened by alienx-zero over 1 year ago
- 1 comment
#197 - dMRIPrep generalizations (m 12-24)
Issue -
State: open - Opened by esavary over 1 year ago
#196 - dMRIPrep roadmap (m3-9)
Issue -
State: open - Opened by esavary over 1 year ago
#195 - MAINT: Rotate CircleCI secrets and setup up org-level context
Pull Request -
State: open - Opened by oesteban almost 2 years ago
#194 - Running problem of a file "scans.json"
Issue -
State: open - Opened by Clancy-wu over 2 years ago
#193 - Mif conversion
Pull Request -
State: closed - Opened by GalKepler over 2 years ago
#192 - Keeping track of fMRIPrep.
Pull Request -
State: open - Opened by GalKepler over 2 years ago
- 1 comment
#191 - [ENH] Keep up with fMRIPrep's infrastructure
Issue -
State: open - Opened by GalKepler over 2 years ago
#190 - [ENH] Mrtrix3-based pipeline
Issue -
State: open - Opened by GalKepler over 2 years ago
#188 - Most of the mrtrix-based pipeline is done
Pull Request -
State: closed - Opened by GalKepler over 2 years ago
#187 - added bids filterring functionality to data collection process
Pull Request -
State: closed - Opened by GalKepler over 2 years ago
- 2 comments
#185 - MAINT: Revise dependencies
Pull Request -
State: open - Opened by oesteban almost 3 years ago
#184 - MAINT: Use the base ``nipreps/miniconda`` image
Pull Request -
State: open - Opened by oesteban almost 3 years ago
- 2 comments
#183 - First LTS release
Issue -
State: open - Opened by oesteban about 3 years ago
Labels: NiPreps Grant
#182 - Build comprehensive integration and stress testing into dMRIPrep
Issue -
State: open - Opened by oesteban about 3 years ago
Labels: NiPreps Grant
#181 - Integration of eddymotion
Issue -
State: open - Opened by oesteban about 3 years ago
Labels: NiPreps Grant
#180 - Benchmark the accuracy of image co-registration to the same subject's T1w image
Issue -
State: open - Opened by oesteban about 3 years ago
Labels: NiPreps Grant
#179 - Gibbs ringing - estimation and correction workflow
Issue -
State: open - Opened by oesteban about 3 years ago
Labels: NiPreps Grant
#178 - DOC: Roadmap update
Pull Request -
State: open - Opened by oesteban about 3 years ago
- 1 comment
#177 - MAINT: Update several CircleCI settings
Pull Request -
State: closed - Opened by oesteban about 3 years ago
#176 - MAINT: Pin h5py separately.
Pull Request -
State: closed - Opened by arokem about 3 years ago
- 2 comments
#175 - FIX: Output eddy parameter files to work dir instead of input dir
Pull Request -
State: closed - Opened by josephmje about 3 years ago
#174 - MAINT: Adopt new NiPreps' governance model
Pull Request -
State: open - Opened by oesteban about 3 years ago
- 4 comments
#172 - Error on "gen_eddy_files"
Issue -
State: open - Opened by h-w-k over 3 years ago
- 1 comment
#171 - Investigate SD estimation with the two polarities of DWI on ds001771
Issue -
State: open - Opened by oesteban over 3 years ago
#170 - Reference workflow - extreme clipping in ds000206
Issue -
State: open - Opened by oesteban over 3 years ago
Labels: bug
#169 - ENH: Use *NiWorkflows*' EPI-reference workflow
Pull Request -
State: closed - Opened by oesteban over 3 years ago
- 7 comments
#168 - SDC - Horrible co-registration of *b=0* reference and EPI reference
Issue -
State: open - Opened by oesteban over 3 years ago
- 1 comment
Labels: bug
#167 - DOC: Add copyright note to every file, add NOTICE file, update Dockefile
Pull Request -
State: closed - Opened by oesteban over 3 years ago
#166 - ENH: Write out *b=0* reference(s)
Pull Request -
State: closed - Opened by josephmje over 3 years ago
#165 - No folder output directory of dwi created
Issue -
State: closed - Opened by nabaruns over 3 years ago
- 4 comments
#164 - FIX: Clear cache for ds000206 dataset
Pull Request -
State: closed - Opened by josephmje over 3 years ago
#163 - DOC: Update external dependency versions
Pull Request -
State: closed - Opened by josephmje over 3 years ago
- 2 comments
#162 - Reportlet to check on eddy/emc results
Issue -
State: open - Opened by oesteban over 3 years ago
#161 - Write out *b=0* reference(s)
Issue -
State: closed - Opened by oesteban over 3 years ago
#160 - using dMRIprep for the first time
Issue -
State: closed - Opened by Meryam1985 over 3 years ago
- 3 comments
#159 - eddy: msg=ECScanManager::GetShellIndicies: Data not shelled
Issue -
State: closed - Opened by levchenkoegor over 3 years ago
- 3 comments
#158 - FIX: PEPOLAR & mapped fieldmaps not showing up in reports
Pull Request -
State: closed - Opened by oesteban over 3 years ago
#157 - Estimated fieldmap present in reports only for fieldmap-less
Issue -
State: closed - Opened by oesteban over 3 years ago
Labels: bug, impact: high, effort: low, depends: SDCFlows
#156 - FIX: Update to new *NiWorkflows* API
Pull Request -
State: closed - Opened by oesteban over 3 years ago
#155 - MAINT: Refactor Dockerfile with better use of miniconda
Pull Request -
State: closed - Opened by oesteban over 3 years ago
- 1 comment
#154 - ENH: Move pandoc execution to the end of the runtime
Pull Request -
State: closed - Opened by oesteban over 3 years ago
- 2 comments
#153 - ENH: *fieldmap-less* integration from *SDCFlows* 2.0
Pull Request -
State: closed - Opened by oesteban over 3 years ago
- 1 comment
#152 - MAINT: Update *SDCFlows* pinning to the latest 2.0.0 release
Pull Request -
State: closed - Opened by oesteban over 3 years ago
#151 - FIX: Change in _svgutils_ API (0.3.2) breaks our reportlet generation
Pull Request -
State: closed - Opened by oesteban over 3 years ago
#150 - ENH: Add number of volumes per *b*-value to QC report
Pull Request -
State: open - Opened by josephmje over 3 years ago
- 8 comments
#148 - DOC: Add FSL ``topup`` reference in citation boilerplate
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#147 - DOC: Revise *dMRIPrep*'s road-map
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#146 - FIX/MAINT: Drop Python 3.6 + Revise Python environment (versions pinned) in Dockerfile
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#145 - Broken numpy dependency for scikit-image installation
Issue -
State: closed - Opened by oesteban almost 4 years ago
#144 - ENH: Temporary integration of FSL eddy
Pull Request -
State: closed - Opened by slimnsour almost 4 years ago
- 18 comments
#143 - DOC: change "functional" to "diffusion"
Pull Request -
State: closed - Opened by josephmje almost 4 years ago
- 1 comment
#142 - FIX: Honor ``--nprocs`` flag
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#141 - FIX: Correctly check SDCFlows registry of ``IntendedFor`` files
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 3 comments
#140 - ENH: Connect fieldmap estimation to preprocessing pipeline of individual DWI runs
Pull Request -
State: closed - Opened by josephmje almost 4 years ago
- 7 comments
#139 - Temporary integration of FSL eddy
Issue -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
Labels: enhancement, impact: high, effort: medium
#138 - ENH: Refactor workflow for simplicity - explicit iteration over DWIs
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#137 - ENH: Run fieldmap estimation using *SDCFlows* 2.0
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#135 - MAINT: Move packaging tests from TravisCI to GitHub Actions
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#134 - MAINT: Move test data to a full-datalad settings
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#133 - updated edickie's affiliation
Pull Request -
State: closed - Opened by edickie almost 4 years ago
#132 - Roundup of denoising and unringing algorithms from ISMRM
Issue -
State: open - Opened by josephmje almost 4 years ago
- 3 comments
Labels: enhancement
#131 - ENH: Use ``bbregister`` upstreamed to NiWorkflows, with sloppy mode
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#130 - STY/MAINT: Preparing the first large overhaul of dMRIPrep
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#129 - ENH: Add number of volumes per *b*-value to QC report
Pull Request -
State: closed - Opened by josephmje almost 4 years ago
- 3 comments
#128 - Using `DiffusionGradientTable` on HCP-style acquisition
Issue -
State: open - Opened by josephmje almost 4 years ago
- 3 comments
#127 - DOC: Update readme and delete contributing guidelines in favour of nipreps website
Pull Request -
State: closed - Opened by josephmje almost 4 years ago
- 2 comments
#126 - MAINT: Adding J. Veraart to the contributors list
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
#125 - ENH: Port bbregister T1-to-dwi registration from fmriprep
Pull Request -
State: closed - Opened by slimnsour almost 4 years ago
- 6 comments
#124 - DOC: Add base SVG file for the "figure1" (aka the workflow) flowchart
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 3 comments
Labels: documentation
#123 - REL: 0.3.0
Pull Request -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#122 - BrainHack Donostia 2020 / Tutorial
Issue -
State: closed - Opened by oesteban almost 4 years ago
- 1 comment
#121 - Benchmarking preprocessing choices with validation data
Issue -
State: open - Opened by dPys about 4 years ago
Labels: impact: high, effort: high, validation / evaluation
#120 - Adds link to NH video.
Pull Request -
State: closed - Opened by arokem about 4 years ago
- 3 comments
#119 - Tutorial Proposal for ISBI (deadline: 09/25)
Issue -
State: closed - Opened by oesteban about 4 years ago
- 12 comments
#118 - Meeting 09/29 - Agenda
Issue -
State: closed - Opened by oesteban about 4 years ago
- 1 comment
#117 - Rotating oblique volumes and bvecs
Issue -
State: open - Opened by josephmje about 4 years ago
- 1 comment
#116 - Revise Roadmap
Issue -
State: closed - Opened by oesteban about 4 years ago
#115 - Port T1w-to-dwi registration from fMRIPrep (only bbregister)
Issue -
State: closed - Opened by oesteban about 4 years ago
Labels: good first issue, impact: medium, effort: medium
#114 - UserWarning: Casting data from int16 to float32
Issue -
State: open - Opened by levchenkoegor about 4 years ago
Labels: bug
#113 - `n4_correct` from `early_b0ref_wf` fails on some subjects
Issue -
State: open - Opened by josephmje about 4 years ago
- 4 comments
Labels: bug
#112 - Link to Oscar's NeuroHackademy tutorial in the documentation
Issue -
State: closed - Opened by arokem about 4 years ago
#111 - fieldmap-free distortion correction
Issue -
State: closed - Opened by h-w-k over 4 years ago
- 4 comments
Labels: impact: high, effort: high, depends: SDCFlows
#106 - MAINT: Remove the leftovers of AFQ in ``.afq/``
Pull Request -
State: closed - Opened by oesteban over 4 years ago
- 3 comments
#104 - Registration tools (arokem)
Pull Request -
State: open - Opened by arokem over 4 years ago
- 4 comments
#101 - FIX: Minor refactor of DWI/brainmasks utilities and dtypes
Pull Request -
State: closed - Opened by oesteban over 4 years ago
- 3 comments
#96 - Framewise displacement calculation
Issue -
State: open - Opened by oesteban over 4 years ago
- 1 comment
Labels: impact: high, effort: medium
#94 - Head-motion estimation for HMC
Issue -
State: closed - Opened by oesteban over 4 years ago
- 3 comments
Labels: impact: high, effort: high
#78 - [ENH] Registration tools
Pull Request -
State: open - Opened by dPys over 4 years ago
- 8 comments
#77 - [ENH] Add emc-related helper functions - images
Pull Request -
State: open - Opened by dPys over 4 years ago
- 10 comments
#76 - [ENH] Add emc helper functions - vectors
Pull Request -
State: open - Opened by dPys over 4 years ago
- 3 comments
#73 - [ENH] - extra bval parsing for number of shells
Pull Request -
State: open - Opened by edickie over 4 years ago
- 6 comments
#70 - [ENH] A doctested grouping algorithm
Pull Request -
State: closed - Opened by mattcieslak over 4 years ago
- 6 comments
#64 - Determine number of shells
Issue -
State: closed - Opened by oesteban over 4 years ago
- 2 comments