nion-software/eels-analysis issues and pull requests

#78 - Include AREELS High Contrast color table via Registry.

Pull Request - State: closed - Opened by cmeyer about 2 months ago

#77 - Python 3.13 final.

Pull Request - State: closed - Opened by cmeyer about 2 months ago

#76 - Drop Python 3.9, 3.10. Add Python 3.13.

Pull Request - State: closed - Opened by cmeyer 2 months ago

#75 - Use scipy.integrate.trapezoid instead of deprecated numpy.trapz for numpy 2 compatibility.

Pull Request - State: closed - Opened by cmeyer 3 months ago

#74 - Fix some bugs in Thermometry.py

Pull Request - State: closed - Opened by Brow71189 over 1 year ago

#73 - Investigate thickness mapping issues

Issue - State: open - Opened by cmeyer almost 2 years ago

#72 - release 6 2

Pull Request - State: closed - Opened by cmeyer over 2 years ago

#71 - Exclude test subdirectory for typing.

Pull Request - State: closed - Opened by cmeyer over 2 years ago

#70 - Add typing.

Pull Request - State: closed - Opened by cmeyer over 2 years ago

#69 - Switch to use build and mypy 942.

Pull Request - State: closed - Opened by cmeyer over 2 years ago

#68 - Measure Temperature prints error messages at a fast rate when data is all zeros or otherwise not suitable for temperature measurement.

Issue - State: open - Opened by Brow71189 almost 3 years ago

#67 - Update typing to work with stricter numpy 1.22.

Pull Request - State: closed - Opened by cmeyer almost 3 years ago

#66 - Running "Map Signal" on spectrum with two background regions fails

Issue - State: open - Opened by Brow71189 almost 3 years ago - 1 comment

#65 - Version 0.6.0. Nion Swift 0.16 compatibility.

Pull Request - State: closed - Opened by cmeyer about 3 years ago

#64 - WIP: Add ability to do a global subtract (fit based on picked spectrum).

Pull Request - State: open - Opened by cmeyer about 3 years ago

#63 - Add sqe_bgyw color map

Issue - State: closed - Opened by cmeyer over 3 years ago - 1 comment

#62 - Improve graphic colors for better visibility.

Pull Request - State: closed - Opened by Brow71189 over 3 years ago - 1 comment

#61 - Add calibrate spectrum tool.

Pull Request - State: closed - Opened by Brow71189 over 3 years ago - 5 comments

#60 - Updating the sum_zlp function in LiveThickness.

Pull Request - State: closed - Opened by bentps over 3 years ago

#59 - Crash while doing background subtraction

Issue - State: open - Opened by cmeyer almost 4 years ago

#58 - Improve zlp analyis

Pull Request - State: closed - Opened by Brow71189 almost 4 years ago

#57 - Align ZLP improvements

Pull Request - State: closed - Opened by Brow71189 almost 4 years ago

#56 - Fix issue with Align ZLP (COM) when using it on empty data.

Pull Request - State: closed - Opened by Brow71189 almost 4 years ago

#55 - Add Python 3.9 to CI tests.

Pull Request - State: closed - Opened by cmeyer about 4 years ago

#54 - Fixing bug with 1 channel ZLPs.

Pull Request - State: closed - Opened by bentps about 4 years ago

#53 - Fixed bug with 1 pixel ZLP and added reflected tail ZLP model.

Pull Request - State: closed - Opened by bentps about 4 years ago - 1 comment

#52 - Add reflected tail method for thickness mapping

Issue - State: open - Opened by cmeyer about 4 years ago - 1 comment

#51 - Add menu item to produce background subtracted SI

Issue - State: open - Opened by cmeyer about 4 years ago

#50 - Add command to map 'integrate an interval' on source data

Issue - State: open - Opened by cmeyer about 4 years ago

#49 - fixing typo to use internal transform functions of polyfit class

Pull Request - State: closed - Opened by bentps about 4 years ago - 1 comment

#48 - Fixing polyfit transform behavior to correctly do power law model.

Pull Request - State: closed - Opened by bentps about 4 years ago - 1 comment

#47 - Added exponential functions for two area method

Pull Request - State: closed - Opened by bentps about 4 years ago - 1 comment

#46 - Add type validation and clean up BackgroundModel.py.

Pull Request - State: closed - Opened by cmeyer about 4 years ago - 1 comment

#45 - Initial commit for two area background fitting

Pull Request - State: closed - Opened by bentps about 4 years ago - 3 comments

#44 - Conda-forge package

Issue - State: closed - Opened by ericpre about 4 years ago - 4 comments

#43 - Reworked AlignZLP. Use graphics as ROI for alignment. Fixes #38.

Pull Request - State: closed - Opened by Brow71189 over 4 years ago - 2 comments

#42 - Display sample thickness automatically when EELS detected

Issue - State: open - Opened by cmeyer over 4 years ago

#41 - Simple way to add background subtract to EELS spectrum

Issue - State: open - Opened by cmeyer over 4 years ago

#40 - Verbose tests, mac, windows build.

Pull Request - State: closed - Opened by cmeyer over 4 years ago

#39 - Added computation for aligning sequences of spectrum images.

Pull Request - State: closed - Opened by Brow71189 over 4 years ago - 5 comments

#38 - Add support for a alignment region to AlignZLP

Issue - State: closed - Opened by Brow71189 almost 5 years ago

#37 - Feff cross sections interfaced using differential cross sections

Pull Request - State: closed - Opened by jjkas almost 5 years ago - 1 comment

#36 - Allow quantification to be performed on a single spectra

Issue - State: open - Opened by cmeyer almost 5 years ago
Labels: audience - user, effort - day, good first issue, impact - medium, reach - medium

#35 - Feff cross sections

Pull Request - State: closed - Opened by jjkas almost 5 years ago - 2 comments

#34 - License?

Issue - State: closed - Opened by ericpre almost 5 years ago

#33 - Fixed subshell_label and spin_fraction in PeriodicTable

Pull Request - State: closed - Opened by jjkas almost 5 years ago - 1 comment

#32 - Integrate quantitative cross sections (FEFF)

Issue - State: closed - Opened by cmeyer almost 5 years ago - 1 comment

#31 - Make AlignZLP output the shifts

Pull Request - State: closed - Opened by Brow71189 almost 5 years ago - 1 comment

#30 - EELS Background subtraction places right fit region outside data range when signal graphic is placed too far to the right

Issue - State: closed - Opened by Brow71189 about 5 years ago - 1 comment

#29 - Changed shift method in ZLP subpixel align to scipy.ndimage.shift wit…

Pull Request - State: closed - Opened by Brow71189 about 5 years ago - 7 comments

#28 - Allow background signal to scale independently of original data (vertically)

Issue - State: open - Opened by cmeyer over 5 years ago

#27 - Add multiple background mode to allow user to choose best algorithm/parameters

Issue - State: closed - Opened by cmeyer over 5 years ago - 1 comment

#26 - Display fit quality parameter on background subtracted line plots

Issue - State: open - Opened by cmeyer over 5 years ago

#25 - moved zlp analysis functions to separate module. Added tests.

Pull Request - State: closed - Opened by Brow71189 over 5 years ago - 1 comment

#24 - Improved zlp alignment

Pull Request - State: closed - Opened by Brow71189 almost 6 years ago - 1 comment

#23 - Add peak fitting capabilities

Issue - State: open - Opened by cmeyer almost 6 years ago

#22 - Thickness and align ZLP should show original image as source

Issue - State: open - Opened by cmeyer almost 6 years ago

#21 - Reorganize EELS menu items to be easier to understand

Issue - State: closed - Opened by cmeyer almost 6 years ago - 1 comment

#20 - Enable live background subtraction during acquisition

Issue - State: closed - Opened by cmeyer almost 6 years ago - 1 comment

#19 - Add option to multiply thickness calculation by lambda.

Issue - State: open - Opened by cmeyer almost 6 years ago

#18 - Add Align ZLP based on cross correlation to find ZLP.

Issue - State: open - Opened by cmeyer almost 6 years ago

#17 - Allow user to plug-in background and thickness models

Issue - State: open - Opened by cmeyer almost 6 years ago

#16 - EELS -> Subtract Background from Spectrum only works when an interval graphic already exists in the selected data item

Issue - State: open - Opened by Brow71189 almost 6 years ago - 2 comments

#15 - Auto pick and background subtraction when region selected on SI and user chooses menu item

Issue - State: open - Opened by cmeyer about 6 years ago

#14 - Add ability to combine maps into RGB images

Issue - State: closed - Opened by cmeyer over 6 years ago - 1 comment

#13 - Handle case where fit region is outside of the data range

Issue - State: open - Opened by cmeyer over 6 years ago

#12 - Add ability to copy an existing analysis setup to a new spectrum image

Issue - State: open - Opened by cmeyer over 6 years ago

#11 - Improve recording of metadata on all results

Issue - State: open - Opened by cmeyer over 6 years ago

#10 - Add ability to produce ratio maps between edges

Issue - State: open - Opened by cmeyer over 6 years ago

#9 - Add ability to have multiple fit regions

Issue - State: closed - Opened by cmeyer over 6 years ago - 1 comment

#8 - Extend background data calculation to beginning and end of data range

Issue - State: closed - Opened by cmeyer over 6 years ago - 1 comment

#7 - Provide a measure thickness script and integrated into UI

Issue - State: closed - Opened by cmeyer over 6 years ago - 1 comment

#6 - Provide a menu item to align ZLP over entire spectrum image

Issue - State: closed - Opened by cmeyer over 6 years ago - 1 comment

#5 - Add ability to add a custom named edge

Issue - State: open - Opened by cmeyer over 6 years ago

#4 - Bug fixes and addition of energy differential x-section function

Pull Request - State: closed - Opened by MikeKundmann about 8 years ago

#3 - Add EELS edge energy table for use by EELS_EdgeIdentification module

Pull Request - State: closed - Opened by MikeKundmann over 8 years ago

#2 - Refactored EELS analysis with vectorized fitting and hydrogenic K-shell cross-sections

Pull Request - State: closed - Opened by MikeKundmann over 8 years ago

#1 - First attempt at eels-analysis integration with simple typo corrections

Pull Request - State: closed - Opened by MikeKundmann over 8 years ago - 1 comment

GitHub / nion-software/eels-analysis issues and pull requests