Ecosyste.ms: Issues

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GitHub / nimble-dev/nimble issues and pull requests

#1528 - update GHA testing runner to Ubuntu 24.04

Issue - State: open - Opened by paciorek 6 days ago

#1527 - Fix sd for dnorm in parameterizationTableLong.md

Pull Request - State: open - Opened by adamgorm 7 days ago

#1525 - Error trap for reduction operations on vector arguments

Issue - State: open - Opened by rperry-usgs 28 days ago - 1 comment

#1524 - CRAN san checking issue on generated code on Windows only

Issue - State: open - Opened by perrydv about 1 month ago
Labels: cleanup

#1522 - strange test error with R-devel only on test-optim.R

Issue - State: closed - Opened by paciorek 2 months ago - 1 comment

#1521 - update to newer version of actions/cache for GitHub CI

Issue - State: closed - Opened by paciorek 2 months ago - 1 comment

#1520 - turn off --preclean when using nimbleExternalCall

Pull Request - State: open - Opened by paciorek 3 months ago

#1520 - turn off --preclean when using nimbleExternalCall

Pull Request - State: closed - Opened by paciorek 3 months ago

#1519 - trap name conflicts involving nf method names

Pull Request - State: closed - Opened by paciorek 3 months ago

#1519 - trap name conflicts involving nf method names

Pull Request - State: open - Opened by paciorek 3 months ago

#1517 - Trap nimbleFunction name conflicts

Pull Request - State: closed - Opened by paciorek 3 months ago - 1 comment

#1515 - error trap dynamic index with AD producing non-scalar result

Pull Request - State: closed - Opened by paciorek 3 months ago

#1514 - fix issue #1513

Pull Request - State: closed - Opened by paciorek 3 months ago

#1512 - Robustify handling of numerical issues in samplers

Pull Request - State: closed - Opened by paciorek 3 months ago - 9 comments

#1511 - Bug in `makeModelDerivsInfo` for multiply split LHSinferred nodes

Issue - State: open - Opened by perrydv 4 months ago
Labels: bug

#1510 - add `warn=FALSE` option to `deregisterDistributions`?

Issue - State: closed - Opened by perrydv 4 months ago - 3 comments
Labels: enhancement, cleanup

#1509 - Robustify handling of numerical issues in CRP

Pull Request - State: closed - Opened by paciorek 4 months ago - 2 comments

#1508 - unexpected behavior with `nimNumeric` when passed `value` but not `length`

Issue - State: closed - Opened by paciorek 4 months ago - 1 comment
Labels: question

#1506 - Skip some macro-related code processing if there are no macros

Issue - State: closed - Opened by kenkellner 4 months ago - 2 comments

#1505 - removeExtraBrackets handles for loops without {}

Pull Request - State: closed - Opened by kenkellner 4 months ago

#1504 - floating point exception with branch `hessian-for-inner-laplace`

Issue - State: closed - Opened by paciorek 4 months ago - 1 comment

#1503 - bug in `removeExtraBracketsInternal`

Issue - State: closed - Opened by paciorek 4 months ago

#1502 - various cleanups for 1.3.0

Pull Request - State: closed - Opened by paciorek 4 months ago - 1 comment

#1501 - catch case of discrete (integer) target with only one viable next value

Pull Request - State: closed - Opened by perrydv 4 months ago - 9 comments

#1500 - untrapped case of stochastic indexing producing a vector

Issue - State: closed - Opened by paciorek 4 months ago - 3 comments
Labels: bug

#1499 - manual information for macros

Pull Request - State: closed - Opened by paciorek 4 months ago - 1 comment

#1498 - `runLaplace` with uncompiled Laplace object fails (`gr_logLik_pTransformed` not found)

Issue - State: open - Opened by paciorek 4 months ago - 2 comments
Labels: bug

#1497 - problematic lookup/scoping for nested nimbleFunctions

Issue - State: closed - Opened by paciorek 4 months ago - 4 comments
Labels: bug, cleanup

#1496 - enhance handling of optimization for Laplace

Pull Request - State: closed - Opened by paciorek 4 months ago - 7 comments

#1494 - don't allow same seed for multiple chains in `runMCMC`?

Issue - State: closed - Opened by paciorek 4 months ago - 5 comments

#1493 - bug with `adaptInterval=1` for `RW_block`

Issue - State: closed - Opened by paciorek 4 months ago - 2 comments
Labels: bug

#1492 - add Barker proposal sampler

Pull Request - State: closed - Opened by paciorek 4 months ago - 8 comments
Labels: enhancement

#1491 - macro-related naming and option

Issue - State: closed - Opened by paciorek 5 months ago - 1 comment

#1489 - added `getMixedDataNodeNames` method for models

Pull Request - State: closed - Opened by danielturek 5 months ago - 4 comments

#1488 - compilation error using `pmax` with `+`

Issue - State: open - Opened by paciorek 6 months ago - 1 comment
Labels: bug

#1487 - spurious warnings about use of non-AD enabled functions

Issue - State: closed - Opened by paciorek 7 months ago - 2 comments
Labels: cleanup

#1486 - unexpected invalid model spec when hoping to use Polya-gamma

Issue - State: closed - Opened by paciorek 7 months ago - 2 comments
Labels: cleanup

#1485 - can't use `nimCat` with nimbleList

Issue - State: closed - Opened by paciorek 7 months ago
Labels: cleanup

#1484 - attempt to use non-existent nimbleList not cleanly error trapped

Issue - State: closed - Opened by paciorek 7 months ago
Labels: cleanup

#1483 - rhub `rchk` errors

Issue - State: open - Opened by paciorek 7 months ago

#1482 - update import of igraph to only import functions used

Pull Request - State: closed - Opened by paciorek 7 months ago - 2 comments

#1480 - fix uncompiled use of updateSettings in Laplace or AGHQ

Pull Request - State: closed - Opened by perrydv 7 months ago - 2 comments

#1479 - remove template arguments from NimArr constructors and destructors for C++20

Pull Request - State: closed - Opened by perrydv 7 months ago - 2 comments

#1478 - new `RW_multinomial` sampler

Pull Request - State: closed - Opened by danielturek 7 months ago - 9 comments

#1477 - code cleanup of RW_block sampler

Pull Request - State: closed - Opened by danielturek 7 months ago

#1475 - updated checks for configureRJ

Pull Request - State: closed - Opened by danielturek 7 months ago - 3 comments

#1474 - Reinstate RW_multinomial sampler

Pull Request - State: closed - Opened by danielturek 7 months ago - 1 comment

#1473 - Fixed minor spelling error in documentation

Pull Request - State: closed - Opened by JimmyJHickey 7 months ago - 1 comment

#1472 - deal with a data frame as the first element of `inits`

Issue - State: closed - Opened by paciorek 8 months ago - 1 comment

#1471 - error trap multivariate samplers assigned to target nodes of RJMCMC

Issue - State: closed - Opened by paciorek 8 months ago - 5 comments

#1470 - getParam warnings for >2D may be confusing

Issue - State: closed - Opened by perrydv 8 months ago - 1 comment

#1469 - name clashes with imported package functions

Issue - State: closed - Opened by perrydv 8 months ago - 5 comments

#1467 - Delete filteringTestLog_Correct.Rout

Pull Request - State: closed - Opened by perrydv 8 months ago

#1466 - fix a few PROTECT and related issues flagged by CRAN checks

Pull Request - State: closed - Opened by perrydv 9 months ago - 2 comments

#1465 - naming for AGHQ/AGHQuad

Issue - State: closed - Opened by paciorek 9 months ago - 7 comments

#1464 - Use safeDeparse instead of as.character in macro parameter processing

Pull Request - State: closed - Opened by kenkellner 9 months ago - 2 comments

#1463 - add formal dependency on R 4.1.0?

Issue - State: closed - Opened by paciorek 9 months ago - 4 comments

#1462 - minor changes to NEWS

Pull Request - State: closed - Opened by danielturek 9 months ago

#1460 - `as.matrix` seg fault

Issue - State: open - Opened by paciorek 9 months ago - 1 comment

#1458 - Difference in printing from compiled code in version 1.2.0

Issue - State: closed - Opened by danielturek 9 months ago - 1 comment

#1457 - Spurious warning on `character()` arguments

Issue - State: closed - Opened by perrydv 9 months ago - 1 comment
Labels: cleanup

#1456 - MacOS test-car.R failure

Issue - State: open - Opened by paciorek 9 months ago - 2 comments

#1455 - AGHQ and nimOptim

Pull Request - State: closed - Opened by perrydv 9 months ago - 4 comments

#1454 - Allow macros to be found by evaluating expressions

Pull Request - State: closed - Opened by perrydv 9 months ago - 2 comments

#1453 - Support AD when nimbleFunction objects are used in models

Pull Request - State: closed - Opened by perrydv 9 months ago - 3 comments

#1452 - deprecate virtual nodeFunction definitions

Pull Request - State: closed - Opened by paciorek 9 months ago

#1451 - WIP: remove virtualNodeFunctionDefinitions

Pull Request - State: closed - Opened by paciorek 9 months ago - 3 comments

#1450 - Cat sampler update

Pull Request - State: closed - Opened by danielturek 9 months ago

#1449 - Make optim methods extensible. Use nlminb by default for Laplace.

Pull Request - State: closed - Opened by perrydv 9 months ago - 3 comments

#1448 - Update `model_macro_builder` docs

Pull Request - State: closed - Opened by kenkellner 9 months ago - 2 comments

#1447 - categorical sampler has length control parameter

Pull Request - State: closed - Opened by danielturek 9 months ago - 3 comments

#1446 - inconsistent uncompiled model handling of initialization

Issue - State: closed - Opened by paciorek 9 months ago - 2 comments

#1445 - add control of number of digits printed from C++

Pull Request - State: closed - Opened by paciorek 9 months ago - 2 comments

#1444 - robustify checking stickbreaking conjugacy

Pull Request - State: closed - Opened by paciorek 9 months ago

#1443 - reenable use of user-specified Eigen and CppAD

Pull Request - State: closed - Opened by paciorek 9 months ago - 5 comments

#1442 - Refer to nimbleSMC JSS paper in User Manual Ch. 8

Issue - State: closed - Opened by perrydv 9 months ago - 1 comment

#1441 - Remove testthat::context() calls

Pull Request - State: closed - Opened by perrydv 9 months ago - 1 comment

#1440 - possible conflicts between user method names and DSL method names

Issue - State: closed - Opened by paciorek 10 months ago - 1 comment
Labels: cleanup

#1439 - WIP: add Polya Gamma sampler

Pull Request - State: closed - Opened by paciorek 10 months ago - 24 comments

#1438 - tweak BFGS call

Pull Request - State: closed - Opened by perrydv 10 months ago - 3 comments

#1437 - add option for ASIS sampling to RW sampler?

Pull Request - State: closed - Opened by paciorek 10 months ago - 13 comments

#1436 - Remove compareMCMCs

Issue - State: closed - Opened by perrydv 10 months ago - 5 comments
Labels: cleanup

#1435 - improve efficiency of `makeModelDerivsInfo` and `makeOutputNodes`

Pull Request - State: closed - Opened by paciorek 10 months ago - 3 comments

#1434 - Revise user manual for 1.2.0

Pull Request - State: closed - Opened by perrydv 10 months ago - 4 comments

#1433 - add `digits` argument to `nimPrint`?

Issue - State: closed - Opened by paciorek 11 months ago - 1 comment

#1432 - Check on VECTOR_ELT intermittent errors

Pull Request - State: closed - Opened by perrydv 11 months ago - 2 comments