Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nglviewer/ngl issues and pull requests

#1057 - What about Mol*?

Issue - State: open - Opened by panda-byte 4 days ago - 2 comments

#1056 - Add option to skip changed signal on an orient event

Pull Request - State: open - Opened by tom-daff-cresset 15 days ago

#1055 - New shape: Icosahedron

Pull Request - State: open - Opened by tom-daff-cresset 15 days ago

#1054 - Handle upper and lowercase bond orders in cif format

Pull Request - State: open - Opened by fredludlow about 1 month ago

#1053 - Reinstate the PLY parser

Pull Request - State: closed - Opened by fredludlow 3 months ago - 1 comment

#1052 - Setting representation on a atom level

Issue - State: closed - Opened by ljkvrn 3 months ago

#1051 - Name representations to toggle on/off later

Issue - State: closed - Opened by pguillem 3 months ago - 2 comments

#1049 - loading ply file error

Issue - State: closed - Opened by vvishwesh 3 months ago - 2 comments
Labels: bug

#1046 - build/js/ngl.dev.js

Issue - State: open - Opened by forever-happy-h 5 months ago - 1 comment

#1045 - Network error loading protein structures from the RCSB

Issue - State: open - Opened by WillHannon-MCB 5 months ago - 1 comment

#1044 - Custom connections

Issue - State: open - Opened by hellhorse123 5 months ago

#1043 - Rcsb provider fixes

Pull Request - State: closed - Opened by ppillot 5 months ago

#1042 - Bug with setSelection and sele

Issue - State: closed - Opened by hellhorse123 6 months ago

#1041 - Regressions

Issue - State: open - Opened by fredludlow 7 months ago

#1040 - 1015 binary cif support

Pull Request - State: closed - Opened by papillot 7 months ago - 18 comments

#1039 - Select the entire molecule by clicking on its atom

Issue - State: open - Opened by hellhorse123 7 months ago - 1 comment

#1038 - displaying hydrogens as ligands

Issue - State: closed - Opened by hellhorse123 7 months ago - 5 comments

#1037 - #865 upgrade three js legacy lights

Pull Request - State: closed - Opened by ppillot 7 months ago - 1 comment

#1036 - MeasureRepresentation between non-atoms

Issue - State: open - Opened by britesma 7 months ago - 2 comments
Labels: enhancement

#1035 - Hiding non-polar hydrogens

Issue - State: closed - Opened by Irlirion 8 months ago - 1 comment

#1034 - Show connections in two difference files

Issue - State: closed - Opened by hellhorse123 8 months ago - 4 comments

#1033 - Multi-touch zoom with multiple NGL instances

Issue - State: open - Opened by bergwerf 8 months ago

#1032 - Funnel like shape

Issue - State: open - Opened by britesma 8 months ago

#1031 - Question: How to save and restore transformation?

Issue - State: open - Opened by bergwerf 8 months ago

#1030 - Export .pdb file

Issue - State: closed - Opened by britesma 8 months ago - 2 comments
Labels: question

#1029 - Why is the effect after superposition not as good as before superposition

Issue - State: open - Opened by tang2552 8 months ago - 1 comment
Labels: question

#1028 - Allow more export of components

Issue - State: closed - Opened by FLIGHTLAMA 8 months ago - 4 comments
Labels: discussion

#1027 - Focus camera on selection

Issue - State: open - Opened by gbayarri 9 months ago

#1026 - Allow export for PdbParser and NetworkStreamer

Pull Request - State: closed - Opened by FLIGHTLAMA 9 months ago

#1025 - Mass in .pdb files

Issue - State: closed - Opened by britesma 9 months ago - 2 comments

#1024 - info in tooltip

Issue - State: closed - Opened by hellhorse123 9 months ago - 2 comments
Labels: enhancement

#1023 - getAtomSetWithinSelection and getAtomSetWithinGroup in several files

Issue - State: closed - Opened by hellhorse123 9 months ago - 4 comments

#1022 - change color of specific residue

Issue - State: open - Opened by pooriyapfn 9 months ago - 2 comments

#1021 - Should threejs be changed to a peer dependency?

Issue - State: open - Opened by luxaritas 9 months ago - 2 comments

#1020 - Incorrect behavior when changing opacity for a separate pocket

Issue - State: closed - Opened by hellhorse123 10 months ago - 3 comments
Labels: question, React, not a bug

#1019 - dispose() method leaves part of the old representation when changing model

Issue - State: closed - Opened by hellhorse123 10 months ago - 2 comments
Labels: question, not a bug

#1018 - Use addArrow to add Cartesian axes

Issue - State: closed - Opened by hainm 10 months ago - 1 comment

#1017 - An option to hide intra-protein non-bonded interactions would be nice [feature request]

Issue - State: closed - Opened by UnixJunkie 10 months ago - 1 comment
Labels: suggestion

#1016 - ngl/src/store /residue-type.ts isRna() issue

Issue - State: open - Opened by Fravadona 10 months ago - 5 comments
Labels: bug

#1015 - RCSB is deprecating MMTF file format and will stop serve it in July 2024

Issue - State: closed - Opened by papillot 10 months ago - 2 comments

#1014 - Embedding NGL 2.2.2 (via `nglview`) doesn't work anymore

Issue - State: open - Opened by hainm 10 months ago - 9 comments
Labels: bug

#1013 - NGL can't show water for this file

Issue - State: closed - Opened by hainm 10 months ago - 4 comments

#1012 - NGL 2.2.2 doesn't show bond

Issue - State: open - Opened by hainm 10 months ago - 5 comments
Labels: enhancement

#1011 - #1010 Colormaker-constructor

Pull Request - State: closed - Opened by ppillot 10 months ago - 3 comments

#1010 - Issue(s) with release 2.2.1 (e.g: custom color doesn't work)

Issue - State: closed - Opened by hainm 10 months ago - 4 comments
Labels: bug

#1009 - Error when display sdf file

Issue - State: closed - Opened by hellhorse123 11 months ago - 3 comments

#1008 - error when try to display sdf file in React

Issue - State: closed - Opened by hellhorse123 11 months ago - 2 comments

#1007 - Saving state and displaying several selected atoms in molecule

Issue - State: closed - Opened by hellhorse123 11 months ago - 1 comment
Labels: question, React

#1006 - upload a local pdb file to view

Issue - State: closed - Opened by orangeSi 11 months ago - 2 comments

#1004 - Change color of all molecule

Issue - State: closed - Opened by hellhorse123 12 months ago - 4 comments
Labels: question, React

#1003 - Not working with ShadowRoot

Issue - State: open - Opened by MarcSkovMadsen 12 months ago - 2 comments
Labels: enhancement, help wanted

#1002 - #865-upgrade-three-js

Pull Request - State: closed - Opened by ppillot 12 months ago - 12 comments

#1001 - #999 cif parsing

Pull Request - State: closed - Opened by ppillot 12 months ago - 5 comments

#1000 - Load MD trajectory in html/js

Issue - State: closed - Opened by pguillem about 1 year ago - 1 comment
Labels: question

#999 - NGL error displaying some mmCIF files

Issue - State: closed - Opened by brucelab about 1 year ago - 2 comments
Labels: bug

#998 - Draw XYZ axes

Issue - State: open - Opened by gbayarri about 1 year ago
Labels: enhancement, help wanted

#997 - update ngl

Pull Request - State: closed - Opened by ppillot about 1 year ago

#996 - How to synchronize mouse actions between two NGL stages?

Issue - State: open - Opened by jong3 about 1 year ago - 1 comment

#995 - loading pdb file from local.

Issue - State: closed - Opened by mehdikosaca about 1 year ago

#994 - Using zoomView to zoom into a residue

Issue - State: open - Opened by pguillem over 1 year ago

#993 - Remove support for IE11

Pull Request - State: closed - Opened by HHongSeungWoo over 1 year ago - 4 comments

#992 - added scroll for focusScroll in pymol mouse controls

Pull Request - State: closed - Opened by chmnk over 1 year ago - 3 comments

#991 - Improve handling of Alphafold mmcif

Issue - State: open - Opened by ppillot over 1 year ago

#990 - Check for missing `pdbx_PDB_helix_class` in CifParser

Pull Request - State: closed - Opened by panda-byte over 1 year ago - 2 comments

#989 - Broaden undefined check when applying representation parameters.

Pull Request - State: closed - Opened by fredludlow over 1 year ago

#988 - Fix/#594

Pull Request - State: closed - Opened by HHongSeungWoo over 1 year ago - 3 comments

#987 - Cannot interact with the plot (dragging, or rotate)

Issue - State: closed - Opened by hanliu0119 over 1 year ago - 3 comments

#986 - NGL unable to load cif files from alphafold database

Issue - State: closed - Opened by giagitom over 1 year ago - 2 comments

#985 - SDF writer issues with selections

Issue - State: open - Opened by ppillot over 1 year ago
Labels: bug

#984 - Fix pdbwriter model format

Pull Request - State: closed - Opened by papillot over 1 year ago

#982 - load .h5 traj from Mdsrv

Issue - State: open - Opened by pguillem over 1 year ago

#981 - Updating shapeComponent or Buffer

Issue - State: closed - Opened by britesma over 1 year ago - 1 comment

#980 - AlphaFold Database CIF files can't be loaded

Issue - State: closed - Opened by panda-byte over 1 year ago - 4 comments
Labels: bug

#979 - Fix calculate chain names

Pull Request - State: closed - Opened by papillot over 1 year ago - 2 comments

#978 - Export images in PDF or SVG format

Issue - State: closed - Opened by ChristianRohde over 1 year ago - 1 comment

#977 - Infer bond options

Pull Request - State: closed - Opened by fredludlow over 1 year ago - 6 comments

#976 - Actions housekeeping

Pull Request - State: closed - Opened by fredludlow over 1 year ago

#975 - How to remove custom shape ?

Issue - State: closed - Opened by luckyxutao over 1 year ago - 1 comment

#974 - Is it possible to rotate dihedral angle?

Issue - State: closed - Opened by luckyxutao over 1 year ago - 1 comment

#973 - Retrieving transformed coordinates of structures shown in ngl viewer

Issue - State: open - Opened by reekiemrizal over 1 year ago - 2 comments

#972 - Denial of service in three

Issue - State: closed - Opened by CLLPCH over 1 year ago - 2 comments

#971 - Define a volume from residue list, and select all atoms inside volume

Issue - State: open - Opened by pguillem over 1 year ago - 3 comments

#970 - Apply multiple rotations

Issue - State: closed - Opened by gbayarri over 1 year ago - 5 comments

#969 - Is it possible to add a global coordinate system to the corner

Issue - State: open - Opened by ashipiling over 1 year ago - 1 comment
Labels: enhancement

#968 - Change visualization parameters?

Issue - State: closed - Opened by spadavec over 1 year ago - 1 comment

#967 - Change visuals when clicked

Issue - State: closed - Opened by DA-L3 almost 2 years ago - 2 comments

#966 - Wireframe spheres not selectable?

Issue - State: closed - Opened by spadavec almost 2 years ago

#965 - Remove('clickPick')

Issue - State: closed - Opened by ashipiling almost 2 years ago - 2 comments

#964 - Return (xyz) coordinates of residue Centroid/Center of mass

Issue - State: closed - Opened by pguillem almost 2 years ago - 2 comments

#963 - How can I load a trajectory DCD file, with topology specified through a PDB?

Issue - State: closed - Opened by razvanmarinescu almost 2 years ago - 3 comments

#962 - Atom indexing on small molecules seems to be incorrect

Issue - State: closed - Opened by spadavec almost 2 years ago - 5 comments

#961 - Selecting list of residues involved in any type of contact between chains :A & :B

Issue - State: closed - Opened by pguillem almost 2 years ago - 3 comments

#960 - Can NGL delete atoms selected or change atoms position

Issue - State: closed - Opened by ashipiling almost 2 years ago - 1 comment

#959 - Fix parm7 parsing: guessElement for CL1 returns carbon

Pull Request - State: closed - Opened by papillot almost 2 years ago

#958 - Ts declarations

Pull Request - State: closed - Opened by papillot almost 2 years ago - 7 comments