Ecosyste.ms: Issues

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GitHub / nf-core/vipr issues and pull requests

#36 - Missing TEMPLATE branch

Issue - State: open - Opened by maxulysse over 4 years ago

#35 - Add social preview image

Pull Request - State: open - Opened by maxulysse over 4 years ago

#34 - Error executing process > gap_fill_assembly

Issue - State: open - Opened by ahmedmoustafa about 5 years ago

#33 - Pipeline development

Issue - State: open - Opened by kokyriakidis about 5 years ago - 1 comment

#32 - Prepare for nf-core sync

Issue - State: open - Opened by sven1103 almost 6 years ago

#31 - Dev > Master

Pull Request - State: closed - Opened by ewels almost 6 years ago

#30 - Updated base code to pass nf-core lint tests

Pull Request - State: closed - Opened by ewels almost 6 years ago - 2 comments

#29 - params.tracedir in nextflow.config

Issue - State: closed - Opened by Ritzttk almost 6 years ago - 4 comments
Labels: bug

#28 - Error when run pipeline with docker file

Issue - State: open - Opened by Ritzttk almost 6 years ago - 4 comments
Labels: bug

#27 - Remove unrequired AWSBatch check already present l55+

Pull Request - State: closed - Opened by apeltzer almost 6 years ago

#26 - Error on VIPR4

Issue - State: closed - Opened by Ritzttk almost 6 years ago - 9 comments
Labels: bug

#25 - Add your name to copyright in licence.md

Issue - State: open - Opened by apeltzer almost 6 years ago

#24 - Speed up consensus iteration

Issue - State: open - Opened by andreas-wilm almost 6 years ago - 1 comment

#23 - Naming conventions

Issue - State: open - Opened by apeltzer almost 6 years ago
Labels: enhancement

#22 - Add CHANGELOG

Pull Request - State: closed - Opened by maxulysse almost 6 years ago - 3 comments

#21 - Add profiles to fix #5

Pull Request - State: closed - Opened by apeltzer almost 6 years ago

#20 - Fixes for #2 and README

Pull Request - State: closed - Opened by apeltzer almost 6 years ago

#19 - Add a DOI on first release

Issue - State: open - Opened by apeltzer almost 6 years ago
Labels: enhancement

#18 - According to @ewels, this default behaviour should be removed.

Pull Request - State: closed - Opened by alneberg almost 6 years ago

#17 - new Singularity image close #16

Pull Request - State: closed - Opened by maxulysse almost 6 years ago

#16 - add Singularity file

Issue - State: closed - Opened by maxulysse almost 6 years ago

#15 - add CHANGELOG

Issue - State: closed - Opened by maxulysse almost 6 years ago

#14 - Fix font logo problem

Pull Request - State: closed - Opened by maxulysse almost 6 years ago

#13 - Remove groovy meta-declaration

Pull Request - State: closed - Opened by pditommaso about 6 years ago - 1 comment
Labels: duplicate

#12 - Get rid of Groovy flag in GitHub

Issue - State: closed - Opened by apeltzer about 6 years ago - 1 comment

#11 - Fix logo font

Issue - State: closed - Opened by andreas-wilm about 6 years ago - 4 comments
Labels: help wanted

#10 - Run nf-core lint

Issue - State: open - Opened by andreas-wilm about 6 years ago - 2 comments

#9 - Fix file permissions for published {sample}_polished_assembly.fa

Issue - State: open - Opened by andreas-wilm about 6 years ago
Labels: enhancement

#8 - create BWA index for contamination reference if missing

Issue - State: open - Opened by andreas-wilm about 6 years ago - 1 comment
Labels: enhancement

#7 - Add support for single-end read data

Issue - State: open - Opened by andreas-wilm about 6 years ago - 1 comment
Labels: enhancement

#6 - Allow other means of read input besides params.yaml

Issue - State: open - Opened by andreas-wilm about 6 years ago - 1 comment

#5 - Add aws, docker and singularity profiles

Issue - State: closed - Opened by andreas-wilm about 6 years ago

#4 - Add docs/configuration

Issue - State: open - Opened by andreas-wilm about 6 years ago
Labels: enhancement

#3 - Add a report (MultiQC) summarizing analysis

Issue - State: open - Opened by andreas-wilm about 6 years ago - 1 comment

#2 - Push containers to nf-core

Issue - State: closed - Opened by andreas-wilm about 6 years ago - 1 comment

#1 - CI tests missing

Issue - State: open - Opened by andreas-wilm about 6 years ago - 1 comment