nf-core/test-datasets issues and pull requests

#869 - Update samplenames in sarscov vcfs

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#868 - add chr21 gtf

Pull Request - State: closed - Opened by CharlotteAnne over 1 year ago
Labels: Ready to review

#867 - refactor test data for `cellranger` modules

Issue - State: closed - Opened by klkeys over 1 year ago - 1 comment
Labels: enhancement

#866 - add datasets for ultraplex demultiplexer nf-core module testing

Pull Request - State: closed - Opened by CharlotteAnne over 1 year ago - 1 comment

#865 - Adjust Paths Bamtofastq samplesheets

Pull Request - State: closed - Opened by SusiJo over 1 year ago

#864 - Add test-data to bamtofastq branch

Pull Request - State: closed - Opened by SusiJo over 1 year ago

#863 - Salmon results compressed and the updated samplesheet for "test_salmon" configuration

Pull Request - State: open - Opened by valentinoruggieri over 1 year ago

#862 - add new file for chromosome

Pull Request - State: closed - Opened by SusiJo over 1 year ago

#861 - Added the pairtools test data

Pull Request - State: closed - Opened by muffato over 1 year ago - 1 comment
Labels: Ready to review

#860 - FIX: Add test data for megatests

Pull Request - State: closed - Opened by maxulysse over 1 year ago - 1 comment

#859 - Add samplesheets

Pull Request - State: closed - Opened by SusiJo over 1 year ago

#858 - Add blacklist_interval.bed

Pull Request - State: closed - Opened by ryanjameskennedy over 1 year ago

#857 - Reorganising unsorted data #856

Pull Request - State: closed - Opened by DLBPointon over 1 year ago - 1 comment
Labels: Ready to review

#856 - Move unsorted data into the generic data dir

Issue - State: closed - Opened by DLBPointon over 1 year ago

#855 - Add reference.dict file

Pull Request - State: closed - Opened by ryanjameskennedy over 1 year ago

#854 - Test data including a unsorted genome file, a bed fileand csv

Pull Request - State: closed - Opened by DLBPointon over 1 year ago
Labels: enhancement, Ready to review

#853 - Add Unsorted text data

Issue - State: closed - Opened by DLBPointon over 1 year ago
Labels: enhancement

#852 - Add gatk4 test data

Pull Request - State: closed - Opened by ryanjameskennedy over 1 year ago

#851 - Add gatk gcnvcaller test data

Pull Request - State: closed - Opened by ryanjameskennedy over 1 year ago - 2 comments

#850 - Add gatk4 test data

Pull Request - State: closed - Opened by ryanjameskennedy over 1 year ago - 1 comment

#849 - Magmap - spelling mistake

Pull Request - State: closed - Opened by danilodileo over 1 year ago

#848 - add `cellranger multi` test data

Pull Request - State: closed - Opened by klkeys over 1 year ago
Labels: enhancement, Ready to review

#847 - Test data for cellranger-atac

Pull Request - State: closed - Opened by heylf over 1 year ago - 2 comments
Labels: enhancement, Ready to review

#846 - add missing ALT and FORMAT to the SV vcf

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#845 - Update and restructure testdata of mhcquant

Pull Request - State: closed - Opened by jonasscheid over 1 year ago

#844 - Add homo sapiens compressed genome test fasta file and its indexes

Pull Request - State: closed - Opened by gq1 over 1 year ago - 3 comments

#843 - Add a (pseudo) NGSCheckMate bed file

Pull Request - State: closed - Opened by SPPearce over 1 year ago - 1 comment

#842 - Update samplesheet for raredisease

Pull Request - State: closed - Opened by ramprasadn over 1 year ago

#841 - Update sv vcf

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#840 - Additional Sarek Azure cloud test files

Pull Request - State: closed - Opened by adamrtalbot over 1 year ago

#839 - add metaphlan4 db

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago

#838 - Metaphlan4 db newest

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago

#837 - Metaphlan4 db

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago
Labels: Ready to review

#836 - Added test data for SAMMYseq data

Pull Request - State: closed - Opened by daisymut over 1 year ago

#835 - Create minimal samplesheet with updated schema

Pull Request - State: closed - Opened by emmarogge over 1 year ago

#834 - Metaphlan4 database

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago

#833 - Fix Background Subtraction markers file

Pull Request - State: closed - Opened by adamjtaylor over 1 year ago

#832 - Add new test data for sammyseq

Issue - State: open - Opened by daisymut over 1 year ago

#831 - Add coreograph test data

Pull Request - State: closed - Opened by adamjtaylor over 1 year ago

#830 - Add coreograph test data

Pull Request - State: closed - Opened by adamjtaylor over 1 year ago - 1 comment

#829 - Added new dataset for thermorawfileparser module

Pull Request - State: closed - Opened by rolivella over 1 year ago

#828 - Add test directory for kmcp module

Pull Request - State: closed - Opened by sofstam over 1 year ago - 2 comments

#827 - Add test datasets for imaging modules

Pull Request - State: closed - Opened by adamjtaylor over 1 year ago

#826 - Data for thermorawfileparser (module)

Pull Request - State: closed - Opened by rolivella over 1 year ago - 4 comments

#825 - Spinningjenny

Pull Request - State: closed - Opened by lucacozzuto over 1 year ago - 1 comment

#824 - Adding functional genomics library and count table for crisprseq

Pull Request - State: closed - Opened by LaurenceKuhl over 1 year ago

#823 - Add PE_only eager3 samplesheet for testing dedup

Pull Request - State: closed - Opened by TCLamnidis over 1 year ago

#822 - Add test datasets for imaging modules

Issue - State: closed - Opened by adamjtaylor over 1 year ago - 3 comments
Labels: imaging

#821 - Add cycif tonsil image and move spatialomics to imaging

Pull Request - State: closed - Opened by jmuhlich over 1 year ago

#820 - add new test-data

Pull Request - State: closed - Opened by danilodileo over 1 year ago

#819 - Phyloplace: Add cyanos_16S.taxonomy.tsv

Pull Request - State: closed - Opened by erikrikarddaniel over 1 year ago

#818 - Crisprseq

Pull Request - State: closed - Opened by LaurenceKuhl over 1 year ago

#817 - Input Spreadsheet for dualrnaseq

Pull Request - State: closed - Opened by pawelciurkaardigen over 1 year ago

#816 - Update input TSVs to include `bam_reference_id` field

Pull Request - State: closed - Opened by TCLamnidis over 1 year ago

#815 - Rename spatialomics to imaging for modules branch

Issue - State: closed - Opened by adamjtaylor over 1 year ago - 2 comments
Labels: imaging

#814 - Add cyano nucleotide taxonomy to phyloplace test data

Issue - State: open - Opened by erikrikarddaniel over 1 year ago

#813 - Added Atoplex bed file

Pull Request - State: closed - Opened by ctuni over 1 year ago - 2 comments
Labels: enhancement, Ready to review

#812 - update interval lists

Pull Request - State: closed - Opened by ramprasadn over 1 year ago