Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nf-core/test-datasets issues and pull requests

#969 - Add extra files

Pull Request - State: closed - Opened by sofstam 11 months ago

#968 - Test data for scnanoseq

Pull Request - State: closed - Opened by atrull314 11 months ago - 2 comments

#967 - Remove some files

Pull Request - State: closed - Opened by sofstam 11 months ago

#966 - Remove some files from kmcp db

Pull Request - State: closed - Opened by sofstam 11 months ago

#965 - Remove some files from kmcp db

Pull Request - State: closed - Opened by sofstam 11 months ago

#964 - kmcp db

Pull Request - State: closed - Opened by sofstam 11 months ago

#963 - All files in tar

Pull Request - State: closed - Opened by sofstam 11 months ago

#962 - Add test data for BAM input

Pull Request - State: closed - Opened by fa2k 12 months ago - 2 comments

#961 - Include only fasta files in tar

Pull Request - State: closed - Opened by sofstam 12 months ago

#959 - Rebuild compressed db

Pull Request - State: open - Opened by TheOafidian 12 months ago - 2 comments

#958 - Add compressed tabular text format files for seqkit tests

Pull Request - State: closed - Opened by heuermh 12 months ago - 1 comment
Labels: Ready to review

#957 - add simple varlocripator calls scenario

Pull Request - State: closed - Opened by FriederikeHanssen 12 months ago

#956 - add local modules test data

Pull Request - State: closed - Opened by sateeshperi 12 months ago
Labels: enhancement

#955 - Add illumination profiles for ome-tiff cycif tonsil

Pull Request - State: closed - Opened by jmuhlich 12 months ago
Labels: Ready to review

#954 - add gcnvmodels for raredisease

Pull Request - State: closed - Opened by ramprasadn almost 1 year ago

#953 - add necessary files for peka

Pull Request - State: closed - Opened by CharlotteAnne about 1 year ago

#952 - Add taxdump files seperately

Pull Request - State: closed - Opened by sofstam about 1 year ago - 2 comments

#951 - Adding readme for cellranger-atac test data

Pull Request - State: closed - Opened by heylf about 1 year ago

#950 - Add MaxQuant files

Pull Request - State: closed - Opened by WackerO about 1 year ago - 5 comments

#949 - Add sample sheet for additional test case

Pull Request - State: closed - Opened by christopher-mohr about 1 year ago

#948 - Add larger human bam

Pull Request - State: closed - Opened by TCLamnidis about 1 year ago - 1 comment

#947 - Add kmcp test_db to samplesheet

Pull Request - State: closed - Opened by sofstam about 1 year ago

#946 - add upd sites

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#945 - Test dataset with mitochndrial data

Pull Request - State: closed - Opened by ksenia-krasheninnikova about 1 year ago

#943 - Add archived minimal database

Pull Request - State: closed - Opened by TheOafidian about 1 year ago - 1 comment

#942 - Add gene score test YAML

Pull Request - State: closed - Opened by apeltzer about 1 year ago - 2 comments

#941 - fix naming

Pull Request - State: closed - Opened by Lucpen about 1 year ago

#940 - feat added eklipse test data

Pull Request - State: closed - Opened by Lucpen about 1 year ago

#939 - Clipseq v2_0 Update

Pull Request - State: closed - Opened by chris-cheshire about 1 year ago

#938 - Update samplesheet_test.csv

Pull Request - State: closed - Opened by JoseEspinosa about 1 year ago

#937 - Add samplesheets for v2.1 of the pipeline

Pull Request - State: closed - Opened by JoseEspinosa about 1 year ago

#936 - update gcnvmodels

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#935 - Update Eager test-data

Pull Request - State: closed - Opened by TCLamnidis about 1 year ago

#934 - Update spatialtranscriptomics test data

Pull Request - State: closed - Opened by grst about 1 year ago

#933 - update cnv model

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#932 - add cnv model

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#931 - Add dumpfiles to create metabuli database

Pull Request - State: closed - Opened by TheOafidian about 1 year ago - 1 comment

#930 - add ganon full test database

Pull Request - State: closed - Opened by jfy133 about 1 year ago

#929 - Remove unchanged input files

Pull Request - State: closed - Opened by TheOafidian about 1 year ago

#927 - Fix commas

Pull Request - State: closed - Opened by LaurenceKuhl about 1 year ago

#926 - Adding full size test sets

Pull Request - State: closed - Opened by LaurenceKuhl about 1 year ago

#925 - Add minimal metabuli database

Pull Request - State: closed - Opened by TheOafidian about 1 year ago

#924 - Add minimal dataset for Metabuli module testing

Pull Request - State: closed - Opened by TheOafidian about 1 year ago

#923 - ploidy model

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#922 - Add technical replicate for spaceranger example data

Pull Request - State: closed - Opened by grst about 1 year ago

#921 - Adding SB26 full dataset

Pull Request - State: closed - Opened by matq007 about 1 year ago - 7 comments

#920 - Move nf-core/demultiple test data from pipeline to test-datasets

Pull Request - State: closed - Opened by drpatelh about 1 year ago - 11 comments

#919 - Add Illumina format SampleSheet to repository

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 2 comments

#918 - Add testdata for spaceranger

Pull Request - State: closed - Opened by grst about 1 year ago - 1 comment

#917 - cellranger data refactor broke tests for non-cellranger modules

Issue - State: closed - Opened by klkeys about 1 year ago
Labels: bug

#916 - Remove samples failing full test

Pull Request - State: closed - Opened by ggabernet about 1 year ago

#915 - Add testdata for Nanostring pipeline

Pull Request - State: closed - Opened by christopher-mohr about 1 year ago

#914 - feat: added SB26, AB339 testing dataset

Pull Request - State: closed - Opened by matq007 about 1 year ago

#913 - Rename genome.fasta

Pull Request - State: closed - Opened by sofstam about 1 year ago

#912 - Rearrange files for v2.1

Pull Request - State: closed - Opened by JoseEspinosa about 1 year ago

#911 - feat: added SB26, AB339 testing dataset

Pull Request - State: closed - Opened by matq007 about 1 year ago

#910 - Change 0.1 to 1 in nodes.dmp

Pull Request - State: closed - Opened by sofstam about 1 year ago

#909 - Insert tab instead of space in the format

Pull Request - State: closed - Opened by sofstam about 1 year ago

#908 - Add HP to testdata for testing filtering option

Pull Request - State: closed - Opened by jonasscheid about 1 year ago

#907 - Add seqid2taxid.map to kmcp

Pull Request - State: closed - Opened by sofstam about 1 year ago

#906 - Revert to initial scientific name

Pull Request - State: closed - Opened by sofstam about 1 year ago

#905 - Kmcp profile

Pull Request - State: closed - Opened by sofstam about 1 year ago

#904 - Correct scientific name in metagenome/names.dmp

Pull Request - State: closed - Opened by sofstam about 1 year ago - 2 comments

#903 - Kmcp profile

Pull Request - State: closed - Opened by sofstam about 1 year ago

#902 - Correct the format

Pull Request - State: closed - Opened by sofstam about 1 year ago

#901 - Airrflow

Pull Request - State: closed - Opened by ssnn-airr about 1 year ago - 2 comments

#900 - Add test data for purecn/normaldb

Pull Request - State: closed - Opened by aldosr about 1 year ago

#899 - Add nodes.dmp and names.dmp to folder

Pull Request - State: closed - Opened by sofstam about 1 year ago - 3 comments

#898 - Add the MetaPhlAn4 test database to database_v1.1.csv

Pull Request - State: closed - Opened by LilyAnderssonLee about 1 year ago

#897 - Add Metaphlan4 test database to database_v1.1.csv

Pull Request - State: closed - Opened by LilyAnderssonLee about 1 year ago

#896 - Remove blank line on samplesheet

Pull Request - State: closed - Opened by LaurenceKuhl about 1 year ago

#895 - Cellranger-Arc test data for cellranger-arc modules

Pull Request - State: closed - Opened by heylf about 1 year ago
Labels: bug, enhancement, Ready to review

#894 - Add a Metaphlan4 test database to taxprofiler test database

Pull Request - State: closed - Opened by LilyAnderssonLee about 1 year ago

#893 - revert 3.0

Pull Request - State: closed - Opened by yuukiiwa about 1 year ago

#892 - test datasets that work on the whole pipeline

Pull Request - State: closed - Opened by LaurenceKuhl about 1 year ago

#891 - update for version 3.2 testing

Pull Request - State: closed - Opened by yuukiiwa about 1 year ago

#890 - Update assembly samplesheet

Pull Request - State: closed - Opened by prototaxites about 1 year ago

#889 - Add ganon to test database TSV

Pull Request - State: closed - Opened by jfy133 about 1 year ago

#888 - Add ganon database for nf-core/taxprofiler

Pull Request - State: closed - Opened by jfy133 about 1 year ago

#887 - Add a GSE ID (GEO) to sra_ids_test.csv

Pull Request - State: closed - Opened by ejseqera about 1 year ago

#886 - update samplesheet

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#885 - subsample ERR9897765 to make tests faster

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#884 - add missing cellranger data info

Pull Request - State: closed - Opened by klkeys about 1 year ago
Labels: enhancement

#883 - fix missing `cellranger` data summary info

Issue - State: closed - Opened by klkeys about 1 year ago - 1 comment
Labels: enhancement

#882 - Adapted the multilane multilib for mammoth dataset to eager3

Pull Request - State: closed - Opened by aidaanva about 1 year ago

#879 - Subsample sample for UMI test data to make it faster for tests

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#878 - Refactor test data for `cellranger` modules

Pull Request - State: closed - Opened by klkeys about 1 year ago - 11 comments
Labels: enhancement, Ready to review

#876 - upload dbNSFP database files

Pull Request - State: closed - Opened by LlaneroHiboreo about 1 year ago - 1 comment
Labels: Ready to review

#875 - Add database subsampled data for snpSift module (dbnsnpf)

Issue - State: closed - Opened by LlaneroHiboreo about 1 year ago - 1 comment

#874 - Add example multi-ref TSV file

Pull Request - State: closed - Opened by jfy133 about 1 year ago

#873 - Add test data for purecn/coverage

Pull Request - State: closed - Opened by aldosr about 1 year ago - 2 comments

#872 - Add additional samplesheet for MAG

Pull Request - State: closed - Opened by jfy133 about 1 year ago

#871 - ADD cram3 for Mutect2

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#870 - Update MAG full samplesheet

Pull Request - State: closed - Opened by jfy133 about 1 year ago - 1 comment