Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/test-datasets issues and pull requests
#969 - Add extra files
Pull Request -
State: closed - Opened by sofstam 11 months ago
#968 - Test data for scnanoseq
Pull Request -
State: closed - Opened by atrull314 11 months ago
- 2 comments
#967 - Remove some files
Pull Request -
State: closed - Opened by sofstam 11 months ago
#966 - Remove some files from kmcp db
Pull Request -
State: closed - Opened by sofstam 11 months ago
#965 - Remove some files from kmcp db
Pull Request -
State: closed - Opened by sofstam 11 months ago
#964 - kmcp db
Pull Request -
State: closed - Opened by sofstam 11 months ago
#963 - All files in tar
Pull Request -
State: closed - Opened by sofstam 11 months ago
#962 - Add test data for BAM input
Pull Request -
State: closed - Opened by fa2k 12 months ago
- 2 comments
#961 - Include only fasta files in tar
Pull Request -
State: closed - Opened by sofstam 12 months ago
#960 - Add metaphlan3 db into metaphlan with `--mpa3` to database_v1.1.csv
Pull Request -
State: closed - Opened by LilyAnderssonLee 12 months ago
#959 - Rebuild compressed db
Pull Request -
State: open - Opened by TheOafidian 12 months ago
- 2 comments
#958 - Add compressed tabular text format files for seqkit tests
Pull Request -
State: closed - Opened by heuermh 12 months ago
- 1 comment
Labels: Ready to review
#957 - add simple varlocripator calls scenario
Pull Request -
State: closed - Opened by FriederikeHanssen 12 months ago
#956 - add local modules test data
Pull Request -
State: closed - Opened by sateeshperi 12 months ago
Labels: enhancement
#955 - Add illumination profiles for ome-tiff cycif tonsil
Pull Request -
State: closed - Opened by jmuhlich 12 months ago
Labels: Ready to review
#954 - add gcnvmodels for raredisease
Pull Request -
State: closed - Opened by ramprasadn almost 1 year ago
#953 - add necessary files for peka
Pull Request -
State: closed - Opened by CharlotteAnne about 1 year ago
#952 - Add taxdump files seperately
Pull Request -
State: closed - Opened by sofstam about 1 year ago
- 2 comments
#951 - Adding readme for cellranger-atac test data
Pull Request -
State: closed - Opened by heylf about 1 year ago
#950 - Add MaxQuant files
Pull Request -
State: closed - Opened by WackerO about 1 year ago
- 5 comments
#949 - Add sample sheet for additional test case
Pull Request -
State: closed - Opened by christopher-mohr about 1 year ago
#948 - Add larger human bam
Pull Request -
State: closed - Opened by TCLamnidis about 1 year ago
- 1 comment
#947 - Add kmcp test_db to samplesheet
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#946 - add upd sites
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#945 - Test dataset with mitochndrial data
Pull Request -
State: closed - Opened by ksenia-krasheninnikova about 1 year ago
#944 - upload goldset/truth file and respective query file for somatic analysis
Pull Request -
State: open - Opened by LlaneroHiboreo about 1 year ago
#943 - Add archived minimal database
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
- 1 comment
#942 - Add gene score test YAML
Pull Request -
State: closed - Opened by apeltzer about 1 year ago
- 2 comments
#941 - fix naming
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
#940 - feat added eklipse test data
Pull Request -
State: closed - Opened by Lucpen about 1 year ago
#939 - Clipseq v2_0 Update
Pull Request -
State: closed - Opened by chris-cheshire about 1 year ago
#938 - Update samplesheet_test.csv
Pull Request -
State: closed - Opened by JoseEspinosa about 1 year ago
#937 - Add samplesheets for v2.1 of the pipeline
Pull Request -
State: closed - Opened by JoseEspinosa about 1 year ago
#936 - update gcnvmodels
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#935 - Update Eager test-data
Pull Request -
State: closed - Opened by TCLamnidis about 1 year ago
#934 - Update spatialtranscriptomics test data
Pull Request -
State: closed - Opened by grst about 1 year ago
#933 - update cnv model
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#932 - add cnv model
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#931 - Add dumpfiles to create metabuli database
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
- 1 comment
#930 - add ganon full test database
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
#929 - Remove unchanged input files
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
#928 - Add dumpfiles and fastq reads needed to test metabuli/build and metabuli/classify modules
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
#927 - Fix commas
Pull Request -
State: closed - Opened by LaurenceKuhl about 1 year ago
#926 - Adding full size test sets
Pull Request -
State: closed - Opened by LaurenceKuhl about 1 year ago
#925 - Add minimal metabuli database
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
#924 - Add minimal dataset for Metabuli module testing
Pull Request -
State: closed - Opened by TheOafidian about 1 year ago
#923 - ploidy model
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#922 - Add technical replicate for spaceranger example data
Pull Request -
State: closed - Opened by grst about 1 year ago
#921 - Adding SB26 full dataset
Pull Request -
State: closed - Opened by matq007 about 1 year ago
- 7 comments
#920 - Move nf-core/demultiple test data from pipeline to test-datasets
Pull Request -
State: closed - Opened by drpatelh about 1 year ago
- 11 comments
#919 - Add Illumina format SampleSheet to repository
Pull Request -
State: closed - Opened by adamrtalbot about 1 year ago
- 2 comments
#918 - Add testdata for spaceranger
Pull Request -
State: closed - Opened by grst about 1 year ago
- 1 comment
#917 - cellranger data refactor broke tests for non-cellranger modules
Issue -
State: closed - Opened by klkeys about 1 year ago
Labels: bug
#916 - Remove samples failing full test
Pull Request -
State: closed - Opened by ggabernet about 1 year ago
#915 - Add testdata for Nanostring pipeline
Pull Request -
State: closed - Opened by christopher-mohr about 1 year ago
#914 - feat: added SB26, AB339 testing dataset
Pull Request -
State: closed - Opened by matq007 about 1 year ago
#913 - Rename genome.fasta
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#912 - Rearrange files for v2.1
Pull Request -
State: closed - Opened by JoseEspinosa about 1 year ago
#911 - feat: added SB26, AB339 testing dataset
Pull Request -
State: closed - Opened by matq007 about 1 year ago
#910 - Change 0.1 to 1 in nodes.dmp
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#909 - Insert tab instead of space in the format
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#908 - Add HP to testdata for testing filtering option
Pull Request -
State: closed - Opened by jonasscheid about 1 year ago
#907 - Add seqid2taxid.map to kmcp
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#906 - Revert to initial scientific name
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#905 - Kmcp profile
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#904 - Correct scientific name in metagenome/names.dmp
Pull Request -
State: closed - Opened by sofstam about 1 year ago
- 2 comments
#903 - Kmcp profile
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#902 - Correct the format
Pull Request -
State: closed - Opened by sofstam about 1 year ago
#901 - Airrflow
Pull Request -
State: closed - Opened by ssnn-airr about 1 year ago
- 2 comments
#900 - Add test data for purecn/normaldb
Pull Request -
State: closed - Opened by aldosr about 1 year ago
#899 - Add nodes.dmp and names.dmp to folder
Pull Request -
State: closed - Opened by sofstam about 1 year ago
- 3 comments
#898 - Add the MetaPhlAn4 test database to database_v1.1.csv
Pull Request -
State: closed - Opened by LilyAnderssonLee about 1 year ago
#897 - Add Metaphlan4 test database to database_v1.1.csv
Pull Request -
State: closed - Opened by LilyAnderssonLee about 1 year ago
#896 - Remove blank line on samplesheet
Pull Request -
State: closed - Opened by LaurenceKuhl about 1 year ago
#895 - Cellranger-Arc test data for cellranger-arc modules
Pull Request -
State: closed - Opened by heylf about 1 year ago
Labels: bug, enhancement, Ready to review
#894 - Add a Metaphlan4 test database to taxprofiler test database
Pull Request -
State: closed - Opened by LilyAnderssonLee about 1 year ago
#893 - revert 3.0
Pull Request -
State: closed - Opened by yuukiiwa about 1 year ago
#892 - test datasets that work on the whole pipeline
Pull Request -
State: closed - Opened by LaurenceKuhl about 1 year ago
#891 - update for version 3.2 testing
Pull Request -
State: closed - Opened by yuukiiwa about 1 year ago
#890 - Update assembly samplesheet
Pull Request -
State: closed - Opened by prototaxites about 1 year ago
#889 - Add ganon to test database TSV
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
#888 - Add ganon database for nf-core/taxprofiler
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
#887 - Add a GSE ID (GEO) to sra_ids_test.csv
Pull Request -
State: closed - Opened by ejseqera about 1 year ago
#886 - update samplesheet
Pull Request -
State: closed - Opened by ramprasadn about 1 year ago
#885 - subsample ERR9897765 to make tests faster
Pull Request -
State: closed - Opened by mirpedrol about 1 year ago
#884 - add missing cellranger data info
Pull Request -
State: closed - Opened by klkeys about 1 year ago
Labels: enhancement
#883 - fix missing `cellranger` data summary info
Issue -
State: closed - Opened by klkeys about 1 year ago
- 1 comment
Labels: enhancement
#882 - Adapted the multilane multilib for mammoth dataset to eager3
Pull Request -
State: closed - Opened by aidaanva about 1 year ago
#881 - Add test dataset with eukaryotic sequences for domain classification
Pull Request -
State: closed - Opened by prototaxites about 1 year ago
#880 - nf-core/mag: Add samplesheet and assemblies for binning entry test config
Pull Request -
State: closed - Opened by prototaxites about 1 year ago
#879 - Subsample sample for UMI test data to make it faster for tests
Pull Request -
State: closed - Opened by mirpedrol about 1 year ago
#878 - Refactor test data for `cellranger` modules
Pull Request -
State: closed - Opened by klkeys about 1 year ago
- 11 comments
Labels: enhancement, Ready to review
#877 - nf-core/mag: Add samplesheet and assemblies for binning entry test config
Pull Request -
State: closed - Opened by prototaxites about 1 year ago
#876 - upload dbNSFP database files
Pull Request -
State: closed - Opened by LlaneroHiboreo about 1 year ago
- 1 comment
Labels: Ready to review
#875 - Add database subsampled data for snpSift module (dbnsnpf)
Issue -
State: closed - Opened by LlaneroHiboreo about 1 year ago
- 1 comment
#874 - Add example multi-ref TSV file
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
#873 - Add test data for purecn/coverage
Pull Request -
State: closed - Opened by aldosr about 1 year ago
- 2 comments
#872 - Add additional samplesheet for MAG
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
#871 - ADD cram3 for Mutect2
Pull Request -
State: closed - Opened by maxulysse about 1 year ago
#870 - Update MAG full samplesheet
Pull Request -
State: closed - Opened by jfy133 about 1 year ago
- 1 comment