nf-core/test-datasets issues and pull requests

#1071 - Raredisease: add rtg example

Pull Request - State: closed - Opened by ramprasadn 5 months ago

#1070 - Add UMI Samplesheet for proper UMI tests

Pull Request - State: closed - Opened by apeltzer 6 months ago

#1069 - What should we do with `docs/ADD_NEW_DATA.md` and `docs/USE_EXISTING_DATA.md` on pipeline branches?

Issue - State: open - Opened by Aratz 6 months ago

#1068 - Update vep references for raredisease

Pull Request - State: closed - Opened by ramprasadn 6 months ago

#1067 - Add Illumina NovaSeq 6000 test runfolder

Pull Request - State: closed - Opened by Aratz 6 months ago

#1066 - Eager: Add parameters to reference sheet

Pull Request - State: open - Opened by TCLamnidis 6 months ago

#1065 - Add resfinder db

Pull Request - State: closed - Opened by marrip 6 months ago - 1 comment

#1064 - Add Thermo raw file (immunopeptides) and Uniprot fasta

Pull Request - State: closed - Opened by jonasscheid 6 months ago - 1 comment

#1063 - adding mobile element references

Pull Request - State: closed - Opened by jemten 6 months ago - 1 comment

#1062 - fixed dia testdataset

Pull Request - State: closed - Opened by daichengxin 6 months ago - 1 comment

#1061 - new test_data added

Pull Request - State: closed - Opened by danilodileo 7 months ago

#1060 - Add tar archives of input directories

Pull Request - State: closed - Opened by fasterius 7 months ago

#1059 - Subset of HiFi reads for Arabidopsis

Pull Request - State: closed - Opened by ksenia-krasheninnikova 7 months ago - 3 comments

#1058 - Added full test samplesheet.

Pull Request - State: closed - Opened by FloWuenne 7 months ago - 1 comment

#1057 - Add test data

Pull Request - State: closed - Opened by danilodileo 7 months ago - 2 comments

#1056 - Depricate variant tsv epitopeprediction

Pull Request - State: closed - Opened by jonasscheid 7 months ago

#1055 - Add metagenome Protein taxdmp files

Pull Request - State: closed - Opened by jfy133 7 months ago

#1054 - Add fastqc outputs for testing multiqc

Pull Request - State: closed - Opened by pinin4fjords 7 months ago - 3 comments

#1053 - fix typo in crisprseq branch samplesheet

Pull Request - State: closed - Opened by LaurenceKuhl 7 months ago

#1052 - Crisprseq add paired-end data

Pull Request - State: closed - Opened by LaurenceKuhl 7 months ago

#1051 - Add test data for modkit/pileup module

Pull Request - State: closed - Opened by Michal-Babins 7 months ago

#1050 - Add new test data for modkit_pileup

Issue - State: open - Opened by Michal-Babins 7 months ago

#1049 - Updated samplesheets Molkart

Pull Request - State: closed - Opened by kbestak 7 months ago

#1048 - Added samplesheets for Molkart

Pull Request - State: closed - Opened by kbestak 7 months ago

#1047 - Added minimum test data for Molkart

Pull Request - State: closed - Opened by kbestak 7 months ago

#1046 - Add spoofed transcript lengths to test data

Pull Request - State: closed - Opened by pinin4fjords 7 months ago

#1045 - Add tsv file to test panacus-visualize

Pull Request - State: closed - Opened by heringerp 8 months ago - 1 comment

#1044 - Revert genes.gtf test data changes

Pull Request - State: closed - Opened by pinin4fjords 8 months ago

#1043 - Update gtf gz to match gtf

Pull Request - State: closed - Opened by pinin4fjords 8 months ago

#1042 - replaced truncated with full PDB files

Pull Request - State: closed - Opened by lrauschning 8 months ago

#1041 - Add line to test empty transcript_id

Pull Request - State: closed - Opened by pinin4fjords 8 months ago

#1040 - add dataset to test dragonflye hybridmode

Pull Request - State: closed - Opened by Daniel-VM 8 months ago

#1039 - Module test dataset for Partis

Pull Request - State: closed - Opened by ashotmarg 8 months ago

#1038 - Metatdenovo

Pull Request - State: closed - Opened by danilodileo 8 months ago

#1037 - Add Methylseq indexes

Pull Request - State: closed - Opened by edmundmiller 8 months ago - 3 comments

#1036 - PDB protein structures

Pull Request - State: closed - Opened by vagkaratzas 8 months ago

#1035 - test files for vcf2cytosure module

Pull Request - State: closed - Opened by jemten 8 months ago

#1034 - updating Callingcards test files

Pull Request - State: closed - Opened by cmatKhan 8 months ago

#1033 - test-data for sentieon/tnfilter

Pull Request - State: closed - Opened by asp8200 8 months ago

#1032 - Crisprseq adding mageck rra contrasts

Pull Request - State: closed - Opened by LaurenceKuhl 8 months ago

#1029 - sorted genome.gtf and removed invalid entries

Pull Request - State: open - Opened by JackCurragh 9 months ago

#1028 - Homo sapiens Genome.gtf test-dataset is invalid

Issue - State: open - Opened by JackCurragh 9 months ago

#1027 - Add minimal testfile for new module openms/peakpickerhires

Pull Request - State: closed - Opened by jonasscheid 9 months ago

#1026 - Test dataset for Partis

Pull Request - State: closed - Opened by ashotmarg 9 months ago - 2 comments

#1025 - Clean up proteomics test data and add data for openms/idmerger module

Pull Request - State: closed - Opened by jonasscheid 9 months ago

#1024 - Add test data for CheckQC module: InterOp files, seq run metadata and bcl2fastq stats

Pull Request - State: closed - Opened by matrulda 9 months ago

#1023 - Added test data, samplesheet, and updated readme

Pull Request - State: open - Opened by a4000 9 months ago

#1022 - add multi fast5 for pod5 conversion

Pull Request - State: closed - Opened by yuukiiwa 9 months ago

#1021 - adding data for est-sfs

Pull Request - State: closed - Opened by BioInf2305 9 months ago

#1020 - add a new dataset for est-sfs

Pull Request - State: closed - Opened by BioInf2305 9 months ago

#1019 - add a new dataset for est-sfs

Issue - State: open - Opened by BioInf2305 9 months ago

#1018 - [`taxprofiler` branch] Add new taxprofiler `sourmash` db

Issue - State: open - Opened by vmikk 9 months ago

#1017 - Add NGSCheckMate bed file

Pull Request - State: closed - Opened by SPPearce 9 months ago

#1016 - Add chr21 version of bed file for NGSCheckMate

Pull Request - State: closed - Opened by SPPearce 9 months ago - 6 comments

#1015 - Add new simulated sv vcf files

Pull Request - State: closed - Opened by nvnieuwk 9 months ago - 4 comments

#1014 - Added samplesheet

Pull Request - State: closed - Opened by PayamEmami 9 months ago

#1013 - eggnogmapper eggnog.db

Pull Request - State: open - Opened by vagkaratzas 9 months ago

#1012 - add paths to ncbench testdata

Pull Request - State: closed - Opened by FriederikeHanssen 9 months ago

#1011 - Fix maxquant dataset

Pull Request - State: closed - Opened by WackerO 9 months ago - 1 comment

#1010 - Imputation

Pull Request - State: closed - Opened by LouisLeNezet 9 months ago - 1 comment

#1009 - Add proteus abundance matrix to maxquant testdata

Pull Request - State: closed - Opened by WackerO 9 months ago - 1 comment
Labels: Ready to review

#1008 - Adding test data for ampliseq with failed samples

Pull Request - State: closed - Opened by sminot 9 months ago

#1007 - recover from accidental deletion of necesary files

Pull Request - State: closed - Opened by Daniel-VM 9 months ago

#1006 - Changing CSV File Extensions to TSV in Test Dataset Files for Correct NF-Validation Interpretation

Pull Request - State: closed - Opened by Daniel-VM 10 months ago

#1005 - Test dataset extension changed from csv to tsv

Pull Request - State: closed - Opened by Daniel-VM 10 months ago

#1004 - Replace ftp with https due to ENA ftp problems

Pull Request - State: closed - Opened by jfy133 10 months ago

#1003 - added .d dia testing data

Pull Request - State: closed - Opened by jspaezp 10 months ago

#1002 - Update maxquant testdata

Pull Request - State: closed - Opened by WackerO 10 months ago
Labels: Ready to review

#1001 - Test data for rangeland

Pull Request - State: closed - Opened by Felix-Kummer 10 months ago

#1000 - Udate path

Pull Request - State: closed - Opened by luisas 10 months ago

#999 - Multiplesequencealign

Pull Request - State: closed - Opened by luisas 10 months ago

#998 - compress

Pull Request - State: closed - Opened by luisas 10 months ago

#997 - Add first test dataset (2 small families + 1 set of structures )

Pull Request - State: closed - Opened by luisas 10 months ago

#996 - [modules] Dataset at `data/genomics/homo_sapiens/illumina/bcl` is too simple

Issue - State: open - Opened by Aratz 10 months ago

#995 - Taxprofiler

Pull Request - State: closed - Opened by sofstam 10 months ago

#994 - Kmcp test database

Pull Request - State: closed - Opened by sofstam 10 months ago - 2 comments

#993 - Use version tags on branches

Issue - State: open - Opened by Emiller88 10 months ago - 1 comment

#992 - Use git-lfs

Issue - State: open - Opened by Emiller88 11 months ago

#991 - Pipedreams

Issue - State: open - Opened by Emiller88 11 months ago

#990 - Correction of test data for stitch

Pull Request - State: closed - Opened by saulpierotti 11 months ago

#989 - Add info about stitch test data

Pull Request - State: closed - Opened by saulpierotti 11 months ago

#988 - Test data for stitch

Pull Request - State: closed - Opened by saulpierotti 11 months ago - 1 comment

#987 - add data to test quilt module

Pull Request - State: closed - Opened by atrigila 11 months ago - 4 comments

#986 - taxprofiler: add dedicated samplsheet for MALT

Pull Request - State: closed - Opened by jfy133 11 months ago

#985 - Add batch effect info to maxquant data

Pull Request - State: closed - Opened by WackerO 11 months ago - 4 comments
Labels: Ready to review

#984 - Update database.csv

Pull Request - State: closed - Opened by sofstam 11 months ago - 2 comments

#983 - add bcftools exons file

Pull Request - State: closed - Opened by TCLamnidis 11 months ago

#982 - Ci tests cleanup

Pull Request - State: closed - Opened by tillenglert 11 months ago - 7 comments

#981 - Change seqid file

Pull Request - State: closed - Opened by sofstam 11 months ago - 1 comment