nf-core/slamseq issues and pull requests

#51 - Important! Template update for nf-core/tools v2.13

Pull Request - State: open - Opened by nf-core-bot 5 months ago

#50 - Important! Template update for nf-core/tools v2.12

Pull Request - State: closed - Opened by nf-core-bot 5 months ago - 1 comment

#49 - Important! Template update for nf-core/tools v2.11.1

Pull Request - State: closed - Opened by nf-core-bot 7 months ago - 1 comment

#48 - Important! Template update for nf-core/tools v2.11

Pull Request - State: closed - Opened by nf-core-bot 7 months ago - 1 comment

#47 - no deseq2 folder in the results directory

Issue - State: open - Opened by HYan-lei 7 months ago

#46 - Important! Template update for nf-core/tools v2.10

Pull Request - State: closed - Opened by nf-core-bot 10 months ago - 1 comment

#45 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot about 1 year ago - 1 comment

#44 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot about 1 year ago - 1 comment

#43 - Bugfix: convert keys to list

Pull Request - State: open - Opened by ChristophH about 1 year ago

#42 - Update usage.md

Pull Request - State: closed - Opened by hitowie over 1 year ago - 1 comment

#41 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#40 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#39 - Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integer

Issue - State: open - Opened by mattheatley over 1 year ago

#38 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#37 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#36 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#35 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#34 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#33 - Important! Template update for nf-core/tools v2.3

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#32 - gtf2bed.py: not enough values to unpack (expected 9, got 1)

Issue - State: open - Opened by yadavbha over 2 years ago

#31 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#30 - gtf2bed.py : attributes longer than 2 elements

Issue - State: open - Opened by elabaronne over 2 years ago

#29 - Java version 17 not recognized/found

Issue - State: closed - Opened by jonwruffin almost 3 years ago

#28 - Important! Template update for nf-core/tools v2.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#27 - Important! Template update for nf-core/tools v2.0.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#26 - Important! Template update for nf-core/tools v2.0

Pull Request - State: closed - Opened by KevinMenden almost 3 years ago - 1 comment

#25 - Important! Template update for nf-core/tools v1.14

Pull Request - State: closed - Opened by nf-core-bot about 3 years ago - 1 comment

#24 - Remove social preview image to use GitHub OpenGraph

Pull Request - State: closed - Opened by maxulysse about 3 years ago

#23 - Important! Template update for nf-core/tools v1.13.2

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#22 - Important! Template update for nf-core/tools v1.13.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#21 - Important! Template update for nf-core/tools v1.13

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#20 - specify the `“--skip_trimming true ” `parameter caused No such variable: Exception evaluating property 'reads' for nextflow.util.ArrayTuple error

Issue - State: open - Opened by libingnan11 over 3 years ago

#19 - IndexError: list index out of range

Issue - State: closed - Opened by EllieDuan over 3 years ago - 2 comments

#18 - Links for SLAMSeq documentation broken

Issue - State: closed - Opened by slsevilla over 3 years ago - 2 comments
Labels: documentation, good first issue

#17 - Fix GRCm38 GTF parsing bug

Pull Request - State: closed - Opened by drpatelh over 3 years ago - 1 comment

#16 - gtf2bed.py py2->py3 conversation error

Issue - State: open - Opened by genio0815 over 3 years ago - 2 comments

#15 - Exception evaluating property 'reads' for nextflow.util.ArrayTuple

Issue - State: open - Opened by drowsygoat almost 4 years ago - 2 comments

#14 - read_length = 50 in nextflow.config is problematic

Issue - State: open - Opened by sisterdot almost 4 years ago

#13 - gtf2bed.py iGenomes incompatibility

Issue - State: open - Opened by sisterdot almost 4 years ago