Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/sarek issues and pull requests
#495 - [FEATURE] Tumor mutational burden (TMB) scoring
Issue -
State: open - Opened by apeltzer over 2 years ago
- 17 comments
Labels: enhancement
#492 - Housekeeping
Pull Request -
State: closed - Opened by FriederikeHanssen over 2 years ago
- 1 comment
#480 - [BUG] htsjdk.samtools.util.RuntimeIOException: java.io.IOException: Invalid file pointer: 101939186246823 for gnomAD.r2.1.1.GRCh38.PASS.AC.AF.only.vcf.gz
Issue -
State: closed - Opened by CloXD over 2 years ago
- 6 comments
Labels: bug
#479 - Add subworkflows
Pull Request -
State: closed - Opened by FriederikeHanssen over 2 years ago
- 10 comments
#478 - Replace nfcore modules
Pull Request -
State: closed - Opened by FriederikeHanssen almost 3 years ago
- 1 comment
#477 - Replace modules with nf-core/modules
Pull Request -
State: closed - Opened by FriederikeHanssen almost 3 years ago
- 1 comment
#476 - add umi subworkflow
Pull Request -
State: closed - Opened by FriederikeHanssen almost 3 years ago
#462 - nf-core modules update all with prefix annotation
Pull Request -
State: closed - Opened by FriederikeHanssen almost 3 years ago
- 3 comments
#458 - [BUG] Root filesystem extraction failed, during BaseRecalibrator step
Issue -
State: closed - Opened by jowkar almost 3 years ago
- 1 comment
Labels: bug, moreinfo
#438 - [BUG] BaseRecalibrator terminated
Issue -
State: closed - Opened by olanio almost 3 years ago
Labels: bug, moreinfo
#430 - [BUG] BaseRecalibrator errors
Issue -
State: closed - Opened by jacorvar about 3 years ago
- 9 comments
Labels: bug, moreinfo
#428 - [BUG] Control-FREEC 'Stack Smashing' error with Mouse SNP file
Issue -
State: closed - Opened by MikeWLloyd about 3 years ago
- 5 comments
Labels: bug
#407 - GA4GH compliant
Issue -
State: open - Opened by FriederikeHanssen about 3 years ago
- 1 comment
Labels: enhancement, help wanted, question
#405 - Create a sentieon specific subworkflow for DSL2
Issue -
State: open - Opened by maxulysse about 3 years ago
- 8 comments
Labels: sentieon
#395 - adaptation for custom read names (specifically MGISEQ)
Issue -
State: closed - Opened by raimondsre about 3 years ago
- 4 comments
Labels: enhancement, question
#391 - [BUG] Sentieon_BQSR is not skipped when dbsnp and indel files are not provided
Issue -
State: closed - Opened by grendon over 3 years ago
- 3 comments
Labels: bug, sentieon
#388 - Add cram support + read splitting with seqkit for speedup
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
- 5 comments
#321 - Sarek should have an error or at least a warning when no fasta params
Issue -
State: closed - Opened by pablosoro over 3 years ago
- 3 comments
Labels: bug, input validation
#320 - Set MarkDuplicates Max_Records_in_RAM to default value
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#298 - Add SplitFastq module
Pull Request -
State: closed - Opened by FriederikeHanssen almost 4 years ago
#226 - Look into GATK Best Practices Pipeline for $5 per genome
Issue -
State: open - Opened by maxulysse over 4 years ago
Labels: enhancement
#100 - Provide reference files for WES for ASCAT
Issue -
State: open - Opened by maxulysse over 4 years ago
- 5 comments
Labels: enhancement
#95 - Community feedback needed: Consider other tools
Issue -
State: open - Opened by maxulysse over 4 years ago
- 24 comments
Labels: enhancement, community-feedback