Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/rnasplice issues and pull requests
#97 - Add some more tags to make the pipeline easier to find
Issue -
State: open - Opened by FriederikeHanssen 11 months ago
Labels: enhancement
#96 - add zenodo doi
Pull Request -
State: closed - Opened by maxulysse 12 months ago
- 2 comments
#95 - bump version
Pull Request -
State: open - Opened by jma1991 12 months ago
- 1 comment
#94 - pre-release fixes
Pull Request -
State: closed - Opened by jma1991 12 months ago
- 1 comment
#93 - example contrastsheet.csv missing
Issue -
State: closed - Opened by Kevin2197 12 months ago
- 1 comment
Labels: bug
#92 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
- 1 comment
#91 - Potential fix for MISO index issue
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#90 - test profile: miso_index failure
Issue -
State: closed - Opened by heathfuqua about 1 year ago
- 19 comments
Labels: bug
#89 - MISO_SASHIMI error: Could not find MISO output files
Issue -
State: closed - Opened by amizeranschi about 1 year ago
- 4 comments
Labels: bug
#88 - refactor rmats contrasts
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#87 - replace across with combine to mimic SQL join
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#86 - suppa fix attempt 1
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#85 - Error with rmats.py when running with multiple contrasts: <filename>.bam not found in .rmats files
Issue -
State: closed - Opened by amizeranschi about 1 year ago
- 10 comments
Labels: bug
#84 - The pipeline should be able to infer strandedness from FASTQ (i.e. allow "auto" for strandedness in the CSV)
Issue -
State: closed - Opened by amizeranschi about 1 year ago
- 2 comments
Labels: enhancement
#83 - STAGER error: subscript out of bounds
Issue -
State: closed - Opened by paolo-kunderfranco about 1 year ago
- 5 comments
Labels: bug
#82 - keep contrasts as array when only one level
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
#81 - EDGER_EXON fails if only single entry in contrast sheet
Issue -
State: closed - Opened by dkoppstein about 1 year ago
- 1 comment
Labels: bug
#80 - Fixes MISO scratch/launch directory and gffread issue
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 4 comments
#79 - Merging template updates
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#78 - The default --miso_genes are invalid when --gencode is specified and cause the pipeline to fail
Issue -
State: closed - Opened by amizeranschi about 1 year ago
- 2 comments
Labels: bug
#77 - V1.0.0 release fixes
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#76 - second pass of v1 fixes
Pull Request -
State: closed - Opened by jma1991 about 1 year ago
- 1 comment
#75 - MISO_SASHIMI looks in NXF_HOME subdirectory instead of working directory for output files
Issue -
State: closed - Opened by dkoppstein about 1 year ago
- 4 comments
Labels: bug
#74 - MISO_SASHIMI step fails when using scratch directory
Issue -
State: closed - Opened by dkoppstein about 1 year ago
- 2 comments
Labels: bug
#73 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
#72 - GTF_2_GFF3 fails with latest Gencode GTF for human
Issue -
State: closed - Opened by amizeranschi over 1 year ago
- 21 comments
Labels: bug
#71 - SUPPA cluster events error
Issue -
State: closed - Opened by paolo-kunderfranco over 1 year ago
- 14 comments
Labels: bug
#70 - ERROR ~ No such variable: Exception evaluating property 'out' for nextflow.script.ChannelOut
Issue -
State: closed - Opened by amizeranschi over 1 year ago
- 7 comments
Labels: bug
#69 - DRIMSEQ_FILTER error
Issue -
State: closed - Opened by paolo-kunderfranco over 1 year ago
- 10 comments
Labels: bug
#68 - initial pass of fixes
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#67 - resolve gencode fix
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#66 - Revert "Fixed gencode issues"
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#65 - Fixed gencode issues
Pull Request -
State: closed - Opened by valentinoruggieri over 1 year ago
#64 - remove sniffer
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#63 - check_contrastsheet not identifying headers even though they're present
Issue -
State: closed - Opened by expansion-bioemformatics over 1 year ago
- 2 comments
#62 - Revert "Fixed params.gencode in prepare_genome - issue #60"
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#61 - Fixed params.gencode in prepare_genome - issue #60
Pull Request -
State: closed - Opened by valentinoruggieri over 1 year ago
#60 - prepare_genome gencode
Issue -
State: closed - Opened by tijeco over 1 year ago
- 2 comments
#59 - prettier CHANGELOG
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#58 - Prettier CHANGELOG.md
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#57 - 1.0.0 release of nf-core/rnasplice pipeline
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 4 comments
#56 - release steps
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#55 - fix lint tests v1
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#54 - Merging template updates
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#53 - v1 of contrasts
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 2 comments
#52 - Implement pairwise DEXSeq contrasts
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#51 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
#50 - Bam and visualisation
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#49 - update process capacity
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
#48 - Test full
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#47 - remove default values specified as None
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#46 - add basic tower.yml file
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#45 - update singularity and docker containers
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#44 - dexseq: stager.R: subscript out of bounds.
Issue -
State: closed - Opened by gl9797 over 1 year ago
- 2 comments
Labels: bug
#43 - fixed some pipeline and module tests
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#42 - Fix module tests
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 2 comments
#41 - fix duplicate exons and star segfault
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 2 comments
#40 - fix samplesheet location
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 2 comments
#39 - Fix full test sample sheet location
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 1 comment
#38 - remove enable_conda param
Pull Request -
State: closed - Opened by jma1991 over 1 year ago
- 2 comments
#37 - Merging template updates
Pull Request -
State: closed - Opened by bensouthgate over 1 year ago
- 2 comments
#36 - Important! Template update for nf-core/tools v2.7.2
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
#35 - Important! Template update for nf-core/tools v2.7.1
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 1 comment
#34 - SL-18 Update SAMTOOLS_INDEX publishDir pattern
Pull Request -
State: closed - Opened by claire-prince almost 2 years ago
- 1 comment
#33 - Sl 15 implement featurecounts for dex seq deu
Pull Request -
State: closed - Opened by claire-prince almost 2 years ago
- 1 comment
#32 - SL-21 Include enable.conda in configuration
Pull Request -
State: closed - Opened by claire-prince almost 2 years ago
- 1 comment
#31 - SL-13 Add param to turn off DEXSeq.gff output save
Pull Request -
State: closed - Opened by claire-prince almost 2 years ago
- 3 comments
#30 - SL-17 Include star_salmon_quant rule in modules.config
Pull Request -
State: closed - Opened by claire-prince almost 2 years ago
- 1 comment
#29 - Use script with echo + sed instead of exec with task.WorkDir for rMATS create_bamlist
Pull Request -
State: closed - Opened by olgabot almost 2 years ago
- 4 comments
#28 - Sl 64 write GitHub documentation
Pull Request -
State: closed - Opened by bensouthgate almost 2 years ago
- 1 comment
#27 - SL-117 fix featurecounts spec
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#26 - SL-119 add gtf_gene_filter to modules.config
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#25 - SL-118 respec modules conf
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#24 - SL-98 rmats read length correction
Pull Request -
State: closed - Opened by asmaali98 almost 2 years ago
- 1 comment
#23 - SL-104 fix withname pattern
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#22 - SL-112 add warning for user
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#21 - SL-106 check denominator specified correctly
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#20 - Sl 64 write GitHub documentation
Pull Request -
State: closed - Opened by bensouthgate almost 2 years ago
- 1 comment
#19 - SL-108 add single prep to withname pattern
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#18 - SL-105 add getchromsizes to modules conf
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#17 - SL-107 typo correction in dex seq
Pull Request -
State: closed - Opened by asmaali98 almost 2 years ago
- 1 comment
#16 - SL-99 add biocparallel
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#15 - SL-98 add rmats mulled container, resolve dexseq bug
Pull Request -
State: closed - Opened by asmaali98 almost 2 years ago
- 1 comment
#14 - SL-101 add suppa parameter check
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#13 - Sl 102 add condition check for rmats to groovy script
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#12 - Sl 96 refactor aligner conditional behaviour
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#11 - SL-95 format bin python files
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 1 comment
#10 - SL-93 refactor rmarts input checks
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#9 - SL-86 refactor ch_samplesheet
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#8 - SL-84 parametize gff type / add process_single tag
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#7 - SL-82 add groovy functions and include valid_params
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#6 - SL-70 Add strandedness,condition and validation code
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#5 - SL-78 update nf-core module structure imports
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#4 - SL-77 Add .github files
Pull Request -
State: closed - Opened by ghost almost 2 years ago
- 2 comments
#3 - SL-33 implement edge deu module
Pull Request -
State: closed - Opened by ghost almost 2 years ago
#2 - Sl 35 rmats single condition
Pull Request -
State: closed - Opened by bensouthgate almost 2 years ago
#1 - Sl 29 implement featurecount module
Pull Request -
State: closed - Opened by ghost almost 2 years ago