Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/quantms issues and pull requests
#132 - Dev reset
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
#131 - set release date and release version
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
Labels: WIP
#130 - Tests for the Python scripts in `./bin`
Issue -
State: open - Opened by fabianegli about 1 year ago
- 1 comment
Labels: enhancement
#129 - More fixes for type annotations
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
#128 - More fixes for type annotations
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
#127 - Mypy found issue fixes
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
#126 - use https instead of http for shields.io resources
Pull Request -
State: closed - Opened by fabianegli about 1 year ago
- 1 comment
#125 - Multiple changes before the release.
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#124 - minor changes
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#123 - commeting dev containers
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#122 - update openms 3.1.0
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#121 - Update diann_convert.py
Pull Request -
State: closed - Opened by daichengxin about 1 year ago
- 1 comment
#120 - Version 1.2 [PLEASE DO NOT MERGE YET]
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 9 comments
#119 - minor changes.
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#118 - Major PR for version 1.2 of quantms
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 6 comments
Labels: enhancement, feature-request
#117 - update nextflow config to load openms dev container.
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#116 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
- 1 comment
#115 - Running this on Kubernetes or docker
Issue -
State: open - Opened by aupadh12 about 1 year ago
Labels: enhancement
#114 - Can't assign 4 names to a 0 column data.table MSStats errror
Issue -
State: open - Opened by Kimmiecc19 about 1 year ago
Labels: bug
#113 - SAGE run in a failing job
Issue -
State: open - Opened by ypriverol about 1 year ago
Labels: bug
#112 - Document new sage option and move to a stable release for the adapter
Issue -
State: open - Opened by jpfeuffer about 1 year ago
#111 - Update main.nf
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 2 comments
#110 - move to sdrf-pipelines version 0.0.23
Issue -
State: closed - Opened by ypriverol about 1 year ago
Labels: enhancement
#109 - fix some lint warnings
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 1 comment
#108 - Merging template update 2.9
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 1 comment
#107 - [DO NOT MERGE] Integration of template 2.9 into dev.
Pull Request -
State: closed - Opened by ypriverol about 1 year ago
- 1 comment
#106 - What is singularity_pull_docker_container?
Issue -
State: closed - Opened by jpfeuffer about 1 year ago
- 3 comments
#105 - [FEATURE] Add sage as a means for identification in DDA
Pull Request -
State: closed - Opened by jpfeuffer about 1 year ago
- 6 comments
#104 - [Discussion] modification specification propagation
Issue -
State: open - Opened by jspaezp over 1 year ago
- 2 comments
#103 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#102 - proteomicsLFQ removes features with few measurements from MSstats input
Issue -
State: closed - Opened by Roman-Si over 1 year ago
- 2 comments
Labels: bug
#101 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#100 - post 1.1.1 release workup
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#99 - add release date
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 5 comments
#98 - Post-release 1.1.1
Issue -
State: open - Opened by fabianegli over 1 year ago
Labels: enhancement
#97 - Prepare for release 1.1.1
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#96 - Prepare for release 1.1.1, Changelog changed
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 2 comments
#95 - Release 1.1.1
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 4 comments
#94 - update doi
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 2 comments
#93 - Update container logic
Pull Request -
State: closed - Opened by sminot over 1 year ago
- 6 comments
#92 - [Doc] mztab columns
Pull Request -
State: closed - Opened by jpfeuffer over 1 year ago
- 4 comments
#91 - [FEATURE] update dev profile
Pull Request -
State: closed - Opened by jpfeuffer over 1 year ago
- 6 comments
#90 - Add the Zenodo Id properly
Issue -
State: closed - Opened by ypriverol over 1 year ago
Labels: enhancement
#89 - [Feature] micromambaci
Pull Request -
State: closed - Opened by jpfeuffer over 1 year ago
- 21 comments
#88 - Upgrade Comet to latest 20223010 version
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 4 comments
#87 - Upgrade to OpenMS 1.9.1 with Comet 2023
Issue -
State: closed - Opened by ypriverol over 1 year ago
- 2 comments
Labels: enhancement
#86 - Prepare for future development
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#85 - Add release date and Zenodo DOI for version 1.1.0
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#84 - Add release date and Zenodo DOI for version 1.1.0
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#83 - Post release updates
Issue -
State: closed - Opened by fabianegli over 1 year ago
Labels: enhancement
#82 - consensusID remove process_medium
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#80 - Prepare for release
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#79 - changes for link module preprocess_expdesign.nf
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 2 comments
#78 - small format changes
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#77 - More changes for review 1.1 release
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 2 comments
#76 - Contribution to v1 1
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 1 comment
#75 - Major changes to fix recomendations in #48
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#74 - small fixing for review PR #48
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#73 - fix check for GITHUB_HEAD_REF
Pull Request -
State: closed - Opened by fabianegli over 1 year ago
- 2 comments
#72 - Major PR with integration changes.
Pull Request -
State: closed - Opened by ypriverol over 1 year ago
- 1 comment
#71 - Completely overhaul conda handling
Issue -
State: closed - Opened by jpfeuffer over 1 year ago
- 1 comment
Labels: bug
#70 - Merging-template
Pull Request -
State: closed - Opened by jpfeuffer over 1 year ago
- 4 comments
#69 - Sync dev
Pull Request -
State: closed - Opened by jpfeuffer over 1 year ago
- 2 comments
#68 - The run-command needs to be updated in documentation
Issue -
State: closed - Opened by charmoniumQ almost 2 years ago
- 1 comment
Labels: bug
#67 - Singularity image not available
Issue -
State: closed - Opened by adomingues almost 2 years ago
- 1 comment
Labels: bug
#66 - Important! Template update for nf-core/tools v2.7.2
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
#65 - Important! Template update for nf-core/tools v2.7.1
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 1 comment
#64 - Allow passing through `raw` files if DIA is used
Issue -
State: closed - Opened by jpfeuffer about 2 years ago
- 8 comments
Labels: enhancement
#63 - Move most modules from local into nf-core
Issue -
State: open - Opened by jpfeuffer about 2 years ago
- 4 comments
Labels: enhancement
#62 - `DIANNCONVERT` crashes when `dia_params` has empty parameters
Issue -
State: closed - Opened by harper357 about 2 years ago
- 2 comments
Labels: bug
#61 - Do not use nextflow readLine() since it downloads files on cluster head nodes
Issue -
State: open - Opened by harper357 about 2 years ago
- 1 comment
Labels: bug
#60 - Important! Template update for nf-core/tools v2.6
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
#59 - Tetsrun
Pull Request -
State: closed - Opened by fabianegli about 2 years ago
- 1 comment
#58 - do not hardcode sdrf-pipelines version
Issue -
State: closed - Opened by fabianegli about 2 years ago
- 2 comments
#57 - Reproduce conda channel failure again
Pull Request -
State: closed - Opened by fabianegli about 2 years ago
- 2 comments
#56 - reproduce conda channel setup failure
Pull Request -
State: closed - Opened by fabianegli about 2 years ago
- 1 comment
#55 - Dev
Pull Request -
State: closed - Opened by fabianegli about 2 years ago
- 1 comment
#54 - [Fix] links due to server change
Pull Request -
State: closed - Opened by jpfeuffer about 2 years ago
- 2 comments
#53 - Important! Template update for nf-core/tools v2.5.1
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
- 9 comments
#52 - Important! Template update for nf-core/tools v2.5
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
- 2 comments
#51 - remove redundant config import
Pull Request -
State: closed - Opened by daichengxin about 2 years ago
- 1 comment
#50 - Transfer all issues into the nf-core/quantms repo
Issue -
State: closed - Opened by fabianegli about 2 years ago
- 1 comment
Labels: enhancement
#49 - Config loaded twice
Issue -
State: closed - Opened by fabianegli about 2 years ago
Labels: bug
#48 - [Release] 1.1
Pull Request -
State: closed - Opened by ypriverol over 2 years ago
- 16 comments
#47 - Major changes in the quantms package
Pull Request -
State: closed - Opened by ypriverol over 2 years ago
- 4 comments
#46 - test configs
Issue -
State: closed - Opened by CaroAMN over 2 years ago
- 1 comment
Labels: bug
#45 - Add mimetype to input parameter in schema
Pull Request -
State: closed - Opened by drpatelh over 2 years ago
- 4 comments
#44 - Important! Template update for nf-core/tools v2.4
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#43 - Clarify/Unify exported scores
Issue -
State: open - Opened by jpfeuffer over 2 years ago
Labels: enhancement
#42 - [BLOCKER] msstats pdfs empty
Issue -
State: closed - Opened by jpfeuffer over 2 years ago
- 6 comments
Labels: bug, blocker
#41 - Add more QC metrics for pmultiQC and use mzQC files
Issue -
State: open - Opened by jpfeuffer over 2 years ago
- 1 comment
Labels: enhancement
#40 - Create database index first for search engines that support it
Issue -
State: open - Opened by jpfeuffer over 2 years ago
Labels: enhancement
#39 - Real full size data sets for AWS full tests
Issue -
State: open - Opened by jpfeuffer over 2 years ago
Labels: enhancement
#38 - Add samplesheet schema for our SDRF input
Issue -
State: open - Opened by jpfeuffer over 2 years ago
Labels: enhancement
#37 - Add tower.yml to specify which reports could be visualized in nf-tower
Issue -
State: open - Opened by jpfeuffer over 2 years ago
Labels: enhancement
#36 - [Testing] Add test profile as alias to test_lfq
Pull Request -
State: closed - Opened by jpfeuffer over 2 years ago
- 1 comment
#35 - [Feature] New release cycle for 1.1
Pull Request -
State: closed - Opened by jpfeuffer over 2 years ago
- 1 comment
#34 - Update CHANGELOG.md for Release 1.0
Pull Request -
State: closed - Opened by jpfeuffer over 2 years ago
- 2 comments
#33 - [FIX] specify container for bash-only modules for AWS
Pull Request -
State: closed - Opened by jpfeuffer over 2 years ago
- 1 comment