Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/pgdb issues and pull requests
#63 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: open - Opened by nf-core-bot 9 months ago
#62 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
- 1 comment
#61 - Extra characters - typo!
Issue -
State: open - Opened by husensofteng about 1 year ago
Labels: bug, invalid
#60 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
- 1 comment
#59 - Important! Template update for nf-core/tools v2.7.2
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#58 - Important! Template update for nf-core/tools v2.7.1
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#57 - error on ensembl_fasta_download
Issue -
State: open - Opened by skr3178 over 1 year ago
- 1 comment
Labels: bug
#56 - Important! Template update for nf-core/tools v2.6
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 1 comment
#55 - Important! Template update for nf-core/tools v2.5.1
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 1 comment
#54 - Important! Template update for nf-core/tools v2.5
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 2 comments
#53 - Add a specific container for the module
Issue -
State: open - Opened by DongdongdongW about 2 years ago
- 2 comments
Labels: enhancement
#52 - Important! Template update for nf-core/tools v2.4
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
- 1 comment
#51 - Add an option when the user provides the COSMIC file as a parameter
Pull Request -
State: closed - Opened by DongdongdongW about 2 years ago
- 1 comment
#50 - Pass the databases as parameters, skipping downloading
Issue -
State: open - Opened by ypriverol about 2 years ago
- 2 comments
Labels: enhancement, feature-request
#49 - DSL2 pipeline
Issue -
State: open - Opened by ypriverol about 2 years ago
Labels: documentation, enhancement, feature-request
#48 - Important! Template update for nf-core/tools v2.3.2
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
#47 - Important! Template update for nf-core/tools v2.3
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 2 comments
#46 - Important! Template update for nf-core/tools v2.2
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#45 - Important! Template update for nf-core/tools v2.1
Pull Request -
State: closed - Opened by nf-core-bot almost 3 years ago
- 1 comment
#44 - Important! Template update for nf-core/tools v2.0.1
Pull Request -
State: closed - Opened by nf-core-bot almost 3 years ago
- 1 comment
#43 - Important! Template update for nf-core/tools v2.0
Pull Request -
State: closed - Opened by KevinMenden almost 3 years ago
- 1 comment
#42 - Add profile to test command in introduction page - docs
Issue -
State: closed - Opened by husensofteng about 3 years ago
Labels: bug
#41 - Important! Template update for nf-core/tools v1.14
Pull Request -
State: closed - Opened by nf-core-bot about 3 years ago
- 2 comments
#40 - Bump version, fix download_all_cbioportal
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 3 comments
#39 - PR `dev` -> `master` for first release.
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#38 - changelog tweaks
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#37 - Fix example commands in docs
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#36 - Remove params.push_s3, minor typos
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#35 - Use `publishDir` to save final output files instead of manual `copyTo`
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 2 comments
#34 - First release review tweaks
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#33 - Remove social preview image to use GitHub OpenGraph
Pull Request -
State: closed - Opened by maxulysse about 3 years ago
#32 - pipeline had no release, but no UNDER CONSTRUCTION warning
Issue -
State: closed - Opened by maxulysse about 3 years ago
Labels: bug
#31 - Merging template updates
Pull Request -
State: closed - Opened by ErikDanielsson about 3 years ago
- 3 comments
#30 - Important! Template update for nf-core/tools v1.13.3
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 3 comments
#29 - minor changes to respond to #19
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#28 - Main nf whitespace
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 1 comment
#27 - minro changes
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#26 - sync with TEMPLATE
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#25 - ignore biotypes in the schema
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#24 - schema changed
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#23 - remove unused flags
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#22 - changes requested in #19
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#21 - More changes
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 1 comment
#20 - changes for release
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 4 comments
#19 - Pseudo PR - DO NOT MERGE
Pull Request -
State: closed - Opened by ewels about 3 years ago
- 2 comments
Labels: WIP
#18 - PR for release 1.0.0
Pull Request -
State: closed - Opened by ypriverol about 3 years ago
- 3 comments
#17 - Important! Template update for nf-core/tools v1.13.3
Pull Request -
State: closed - Opened by nf-core-bot over 3 years ago
- 1 comment
#16 - Important! Template update for nf-core/tools v1.13.2
Pull Request -
State: closed - Opened by nf-core-bot over 3 years ago
- 2 comments
#15 - Important! Template update for nf-core/tools v1.13.1
Pull Request -
State: closed - Opened by KevinMenden over 3 years ago
- 1 comment
#14 - Important! Template update for nf-core/tools v1.13
Pull Request -
State: closed - Opened by nf-core-bot over 3 years ago
#13 - PGDB: Convert all params docs to JSON schema
Issue -
State: closed - Opened by apeltzer over 3 years ago
- 1 comment
Labels: enhancement
#12 - Only save (tryptic) peptides that support a variant
Issue -
State: closed - Opened by jgriss over 3 years ago
- 4 comments
Labels: enhancement
#11 - gunzip_ensembl_files fails with missing files
Issue -
State: closed - Opened by jgriss over 3 years ago
- 3 comments
Labels: bug
#10 - Pipeline fails with error `Access to undefined parameter `vcf_file``
Issue -
State: closed - Opened by jgriss over 3 years ago
- 2 comments
Labels: bug
#9 - Pipeline alters files in `asset` directory
Issue -
State: closed - Opened by jgriss over 3 years ago
- 5 comments
Labels: bug
#8 - Running pgdb with the vcf as an inout
Issue -
State: closed - Opened by Jokendo-collab over 3 years ago
- 5 comments
Labels: bug
#7 - [Question] Include own VCF files
Issue -
State: closed - Opened by ypriverol over 3 years ago
- 5 comments
Labels: enhancement, question
#6 - remove `split_by_filter_column` flag
Issue -
State: closed - Opened by husensofteng over 3 years ago
- 1 comment
Labels: enhancement
#5 - Add parameter to specify filter field for cosmic data
Issue -
State: closed - Opened by husensofteng over 3 years ago
- 3 comments
Labels: enhancement
#4 - Filter cosmic by cell line
Issue -
State: closed - Opened by husensofteng over 3 years ago
- 5 comments
Labels: bug
#3 - what is the command to get database from COSMIC
Issue -
State: closed - Opened by ypriverol over 3 years ago
- 8 comments
Labels: enhancement, help wanted
#2 - COSMIC Downloader test failing
Issue -
State: closed - Opened by ypriverol over 3 years ago
Labels: bug
#1 - Bug in decoy creation
Issue -
State: closed - Opened by ypriverol over 3 years ago
- 1 comment
Labels: bug