nf-core/nf-co.re issues and pull requests

#1795 - Add aws results

Pull Request - State: open - Opened by mashehu over 1 year ago - 1 comment

#1794 - add tools page

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1793 - Tutorial: using nf-core/configs in custom workflows

Pull Request - State: open - Opened by jfy133 over 1 year ago - 1 comment

#1792 - trim whitespace when filtering pipelines and modules

Pull Request - State: closed - Opened by mashehu over 1 year ago

#1791 - Fix typo in `hook_url` docs

Pull Request - State: closed - Opened by matthdsm over 1 year ago

#1790 - improve pipeline search & inline some svg icons

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1789 - Add missing nf-core directories

Pull Request - State: closed - Opened by TheOafidian over 1 year ago

#1788 - Add about pages

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1787 - Add Nextflow Mail docs caveat to getting started page

Pull Request - State: open - Opened by jfy133 over 1 year ago

#1786 - fix company name

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#1785 - Add prettier step to sbwf/module guidelines and update all examples to 2.8

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 2 comments

#1784 - Add Math support to the website

Issue - State: open - Opened by aidaanva over 1 year ago
Labels: enhancement

#1783 - added ukri hartree centre to community list

Pull Request - State: open - Opened by scheckley over 1 year ago - 5 comments

#1782 - bytesize nf-validation

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1781 - Add a schema to params files

Issue - State: open - Opened by Emiller88 over 1 year ago - 3 comments
Labels: enhancement

#1780 - Fix header and footer links

Pull Request - State: closed - Opened by mashehu over 1 year ago

#1779 - add pipeline page redirects, add release-shas to json

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1778 - Update publications.md

Pull Request - State: closed - Opened by sguizard over 1 year ago

#1777 - Unclear How to Join Community

Issue - State: closed - Opened by jeffquinn-msk over 1 year ago - 3 comments
Labels: bug

#1776 - switch dev pages for pipelines to SSR (+ update to hybrid SSR)

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1775 - Update bytesize_workflow_safety.md

Pull Request - State: closed - Opened by maxulysse over 1 year ago

#1774 - bytesize nf-core/quantms

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1773 - Move azure resource request section from templates to the website

Issue - State: open - Opened by ramprasadn over 1 year ago
Labels: enhancement

#1772 - Update mentorships.md to close applications

Pull Request - State: closed - Opened by mribeirodantas over 1 year ago

#1771 - Add pipeline search on main page

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1770 - Add contact information for safety officers

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 1 comment

#1769 - add boolean and list as possible module input/output types

Pull Request - State: closed - Opened by mashehu over 1 year ago

#1768 - Clarify where you upload and PR into on test-datasets guidelines

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 1 comment

#1767 - add boolean as allowed type in meta.yml

Pull Request - State: closed - Opened by mashehu over 1 year ago

#1766 - Bytesize: Attach code examples, tweak text

Pull Request - State: closed - Opened by ewels over 1 year ago

#1765 - first try with pagefind

Pull Request - State: open - Opened by mashehu over 1 year ago - 2 comments

#1764 - Add config pages

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1763 - Postpone deadline for 3rd mentorship application

Pull Request - State: closed - Opened by mribeirodantas over 1 year ago

#1762 - bytesize survey results 2023

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1761 - bytesize python script packages

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1760 - Change example documentation to use quay.io as default

Pull Request - State: closed - Opened by adamrtalbot over 1 year ago

#1759 - Thank other companies/services supporting nf-core

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 2 comments

#1758 - restructure components directory

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1757 - Add Seqera to the About page for financial support.

Pull Request - State: closed - Opened by ewels over 1 year ago - 1 comment

#1756 - Tweak: Pipeline release review docs

Pull Request - State: closed - Opened by ewels over 1 year ago - 2 comments

#1755 - make version of yaml parser stricter

Pull Request - State: closed - Opened by mashehu over 1 year ago

#1754 - add docs for refgenie alias translation

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#1753 - Bytesize transcript hack md

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1752 - bytesize translations

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1751 - add youtube and figshare links to bytesize hackMD

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1750 - bytesize talk mentorship program

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1749 - Add subworkflows

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1748 - Fix homepage links

Pull Request - State: closed - Opened by ewels over 1 year ago

#1747 - Link to how to install nf-core

Pull Request - State: open - Opened by richelbilderbeek over 1 year ago - 1 comment

#1746 - 404 Error for https://nf-co.re/<pipeline>/releases

Issue - State: open - Opened by tdanhorn over 1 year ago
Labels: bug

#1745 - Bump xml2js and aws-sdk

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#1744 - Remove reference to round 2 in the text

Pull Request - State: closed - Opened by christopher-hakkaart over 1 year ago

#1743 - Link to mulled name tool

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#1742 - Provide rationale behind ext.args

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 2 comments

#1741 - Revert "Hacky fix for ToC sidebar"

Pull Request - State: closed - Opened by ewels over 1 year ago

#1740 - bytesize workflow safety and immutable objects

Pull Request - State: closed - Opened by FranBonath over 1 year ago - 1 comment

#1739 - bytesize transcript hgtseq

Pull Request - State: open - Opened by FranBonath over 1 year ago - 1 comment

#1738 - bytesize_hackMD_reveal.js

Pull Request - State: closed - Opened by FranBonath over 1 year ago

#1737 - Update info on the mentorship program

Pull Request - State: closed - Opened by mribeirodantas over 1 year ago

#1736 - add example for optional input

Pull Request - State: closed - Opened by FriederikeHanssen over 1 year ago - 1 comment

#1735 - Add docs for schema_ignore_params

Issue - State: open - Opened by maxulysse over 1 year ago
Labels: enhancement

#1734 - Davide Rambaldi HT contributor

Pull Request - State: closed - Opened by tucano over 1 year ago - 1 comment

#1733 - Remove references to profiles and DSL2-ify in troubleshooting page

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 1 comment

#1732 - Troubleshoot docs should remove references to profiles

Issue - State: open - Opened by jfy133 over 1 year ago
Labels: bug

#1731 - Changed opacity of 'edit on github'- button

Pull Request - State: open - Opened by sofiahag over 1 year ago
Labels: enhancement, front-end, low-priority

#1730 - Update tutorial creating with nf core

Pull Request - State: closed - Opened by tucano over 1 year ago - 2 comments

#1729 - updated link to correct line of nextflow.config in dsl2_modules_tutorial.md

Pull Request - State: closed - Opened by NicRamb over 1 year ago - 2 comments

#1727 - updated new pipeline docs (issue #1615)

Pull Request - State: open - Opened by cezargrig98 over 1 year ago - 4 comments

#1726 - fixes #1725

Pull Request - State: open - Opened by daisymut over 1 year ago - 1 comment

#1724 - Add more clarification to use of ARGS and META in moduels guidelines

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 1 comment

#1723 - Code formatting tweaks

Pull Request - State: closed - Opened by ewels over 1 year ago - 1 comment

#1722 - Add tips for version extraction

Pull Request - State: closed - Opened by LouisLeNezet over 1 year ago - 2 comments

#1720 - Modified black and linting sections, added new prettier section

Pull Request - State: open - Opened by Furentsu over 1 year ago

#1718 - Added example usage to module pages

Pull Request - State: open - Opened by JuraNJ over 1 year ago - 1 comment

#1717 - Teams notifications

Pull Request - State: closed - Opened by atrigila over 1 year ago - 6 comments
Labels: documentation, hackathon, site-content

#1713 - Moved anchor links to the left on the pipeline parameter page

Pull Request - State: closed - Opened by sofiahag over 1 year ago - 4 comments
Labels: enhancement, front-end, low-priority

#1709 - Update bytesize-23-nf-core-hic.md

Pull Request - State: closed - Opened by tommasianna over 1 year ago

#1682 - Fixed git push arguments on Adding new pipeline.

Pull Request - State: open - Opened by KarNair over 1 year ago - 10 comments

#1652 - Add things from multiqc website

Pull Request - State: closed - Opened by mashehu over 1 year ago - 1 comment

#1648 - Parameters: make fa icon heading link

Issue - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment
Labels: first-timers-only

#1639 - Update tutorial for adding modules to pipelines

Issue - State: closed - Opened by christopher-hakkaart over 1 year ago - 1 comment
Labels: documentation, hackathon

#1611 - Update link in pipeline configuration docs

Issue - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment
Labels: documentation, hackathon

#1535 - Bytesize transcript dsl2 pipeline starter

Pull Request - State: open - Opened by FranBonath almost 2 years ago
Labels: documentation

#1531 - Bytesize transcript metaboigniter

Pull Request - State: closed - Opened by FranBonath almost 2 years ago
Labels: documentation

#1528 - bytesize transcript coproID

Pull Request - State: closed - Opened by FranBonath almost 2 years ago - 4 comments
Labels: documentation

#1527 - bytesize transcript pgdb

Pull Request - State: open - Opened by FranBonath almost 2 years ago
Labels: documentation

#1526 - bytesize transcript nf tower cli

Pull Request - State: closed - Opened by FranBonath almost 2 years ago
Labels: documentation

#1525 - bytesize34 transcript dsl2 syntax

Pull Request - State: closed - Opened by FranBonath almost 2 years ago
Labels: documentation

#1524 - bytesize talk debugging a failed pipeline

Pull Request - State: closed - Opened by FranBonath almost 2 years ago - 1 comment

#1523 - bytesize transcript custom MultiQC

Pull Request - State: open - Opened by FranBonath almost 2 years ago
Labels: documentation

#1521 - Bytesize transcript software packaging

Pull Request - State: closed - Opened by FranBonath almost 2 years ago - 1 comment
Labels: documentation

#1517 - bytesize transcript survey results

Pull Request - State: closed - Opened by FranBonath almost 2 years ago
Labels: first-timers-only, documentation

#1510 - Bytesize transcript dualrnaseq

Pull Request - State: open - Opened by FranBonath almost 2 years ago - 1 comment
Labels: documentation

#1509 - Bytesize transcript rnaseq

Pull Request - State: closed - Opened by FranBonath almost 2 years ago - 1 comment
Labels: documentation

#1508 - refgenie problem

Issue - State: open - Opened by freedog8 almost 2 years ago - 6 comments
Labels: bug

#1455 - Add some documentation on how to enable Teams notifications for pipeline runs

Issue - State: closed - Opened by FriederikeHanssen about 2 years ago
Labels: enhancement, documentation, hackathon

#1393 - Update DSL2 module tutorial

Pull Request - State: open - Opened by jenmuell about 2 years ago - 2 comments
Labels: documentation

#1180 - List all `Modules` used in a pipeline

Issue - State: open - Opened by sateeshperi over 2 years ago - 1 comment
Labels: back-end

#1053 - Update CPU guidance to not split cores.

Issue - State: closed - Opened by mahesh-panchal over 2 years ago - 13 comments
Labels: documentation, infrastructure

#1033 - Add tips on extracting version information from commands

Issue - State: closed - Opened by mahesh-panchal over 2 years ago
Labels: documentation, hackathon, infrastructure

GitHub / nf-core/nf-co.re issues and pull requests