nf-core/nanostring issues and pull requests

#53 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot over 1 year ago

#52 - Add pipeline map to docs

Issue - State: open - Opened by christopher-mohr over 1 year ago
Labels: documentation

#51 - Fix normalization & address PR comments

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#50 - update version

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#49 - Release 1.2.0

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#48 - Add parameter to specify id column for heatmap

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 2 comments

#47 - Update container

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 2 comments

#46 - Update template, fix issue

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#45 - Update NACHO R package

Issue - State: closed - Opened by christopher-mohr over 1 year ago
Labels: bug, enhancement

#44 - NACHO (qc) report not published

Issue - State: closed - Opened by christopher-mohr over 1 year ago
Labels: bug

#43 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago

#42 - Allow normalization adjustment

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#41 - Patch Release 1.1.1

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#40 - Add additional test case

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#39 - Fix unique colnames requirement for heatmap

Issue - State: closed - Opened by apeltzer over 1 year ago - 2 comments
Labels: bug

#38 - Allow Skippnig heatmap functionality

Issue - State: closed - Opened by apeltzer over 1 year ago - 1 comment
Labels: bug

#37 - Allow skipping heatmap creation

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#36 - Add nf test

Pull Request - State: open - Opened by apeltzer over 1 year ago - 2 comments

#35 - Bump 1.2.0dev

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#34 - RELEASE PR 1.1.0 "Picometre"

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#33 - Add gene-heatmap functionality

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#32 - [Feature] Gene Score Computation

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 2 comments

#31 - AWS Full tests not shown at nf-core

Issue - State: closed - Opened by apeltzer over 1 year ago - 2 comments
Labels: bug

#30 - Back to dev, add Zenodo doi

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#29 - Final touches for release

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#28 - Fix issues for release

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#27 - Fix linting, add sentence on usage

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#26 - RELEASE 1.0.0

Pull Request - State: closed - Opened by apeltzer over 1 year ago - 2 comments

#25 - Update mulled container, add NACHO render

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#24 - Fix QC outlier columns, update output docs

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#23 - Improve multiqc report

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 2 comments

#22 - Improvements for first release

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#21 - Add pipeline functionality

Pull Request - State: closed - Opened by christopher-mohr over 1 year ago - 1 comment

#20 - Investigate integration of GeoMX data

Issue - State: open - Opened by apeltzer over 1 year ago

#19 - Upload Testdata to nf-core/testdata

Issue - State: closed - Opened by apeltzer over 1 year ago

#18 - Provide export for DGE via diffabundance pipeline

Issue - State: open - Opened by apeltzer over 1 year ago

#17 - Create Gene Heatmap for selected set of Genes

Issue - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#16 - Compute Gene Set Scores

Issue - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#15 - Create Gene Expression Boxplots

Issue - State: closed - Opened by apeltzer over 1 year ago - 1 comment

#14 - MultiQC Report / Table for QC

Issue - State: closed - Opened by apeltzer over 1 year ago - 2 comments

#13 - Provide annotated Normalized Counts after Nacho Norm

Issue - State: closed - Opened by apeltzer over 1 year ago - 3 comments

#12 - Nacho Norm

Issue - State: closed - Opened by apeltzer over 1 year ago

#11 - Nacho QC

Issue - State: closed - Opened by apeltzer over 1 year ago

#10 - Add Docker URL

Pull Request - State: closed - Opened by apeltzer over 1 year ago

#9 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#8 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 2 comments

#7 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 2 comments

#6 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#5 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#4 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#3 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#2 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 2 comments

#1 - Important! Template update for nf-core/tools v2.3.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 2 comments

GitHub / nf-core/nanostring issues and pull requests