Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nf-core/modules issues and pull requests

#4026 - new module: dragen

Issue - State: open - Opened by marrip about 1 year ago - 5 comments
Labels: new module

#4025 - PLINK2 add nf-tests and fix broken pytests

Pull Request - State: open - Opened by mauro-saporita about 1 year ago - 2 comments

#4024 - bismark: nf-test migration

Pull Request - State: closed - Opened by phue about 1 year ago - 3 comments
Labels: Ready for Review, nf-test

#4023 - new module: Metaxa2

Issue - State: open - Opened by minigonche about 1 year ago
Labels: new module

#4022 - new module: tcoffee_irmsd

Issue - State: open - Opened by luisas about 1 year ago
Labels: new module

#4021 - new module: tcoffee/alncompare

Issue - State: open - Opened by luisas about 1 year ago
Labels: new module

#4020 - new module: RiboCode

Issue - State: open - Opened by JackCurragh about 1 year ago - 1 comment

#4019 - new module: RiboCode/RiboCode

Issue - State: closed - Opened by JackCurragh about 1 year ago - 1 comment
Labels: new module

#4018 - new module: magic

Issue - State: open - Opened by suzannejin about 1 year ago

#4017 - bump T-Coffee version

Pull Request - State: closed - Opened by lrauschning about 1 year ago

#4015 - new module: dca

Issue - State: open - Opened by suzannejin about 1 year ago

#4014 - new module: sanity

Issue - State: open - Opened by suzannejin about 1 year ago

#4013 - new module: macsima2mc

Issue - State: open - Opened by mbruhns about 1 year ago
Labels: new module

#4012 - Feat/cat_cat nf-test

Pull Request - State: closed - Opened by Joon-Klaps about 1 year ago
Labels: Ready for Review, nf-test

#4011 - new module: checkqc

Issue - State: open - Opened by matrulda about 1 year ago
Labels: new module

#4009 - new module: sctransform

Issue - State: open - Opened by suzannejin about 1 year ago

#4008 - Update `sourmash` modules to 4.8.4

Pull Request - State: closed - Opened by vmikk about 1 year ago - 4 comments

#4007 - new module: muscle5/align

Issue - State: closed - Opened by luisas about 1 year ago
Labels: new module

#4006 - new module: scran

Issue - State: open - Opened by suzannejin about 1 year ago

#4005 - new subworkflow: NF_CORE_PIPELINE_UTILS

Issue - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment
Labels: new subworkflow

#4004 - add cellranger atac to scrna-seq workflow

Issue - State: closed - Opened by FelixKrueger about 1 year ago - 1 comment

#4003 - new subworkflow: SalmonTE

Issue - State: open - Opened by Emiller88 about 1 year ago
Labels: new subworkflow

#4002 - new module: edger/tmm

Issue - State: open - Opened by suzannejin about 1 year ago

#4001 - new module: zcompositions/lrsvd

Issue - State: open - Opened by suzannejin about 1 year ago
Labels: new module

#4000 - new module: zcompositions/multRepl

Issue - State: open - Opened by suzannejin about 1 year ago
Labels: new module

#3999 - new module: partis

Issue - State: closed - Opened by ashotmarg about 1 year ago

#3998 - set fixed version for python

Pull Request - State: closed - Opened by mashehu about 1 year ago

#3997 - new module: partis

Issue - State: open - Opened by ashotmarg about 1 year ago
Labels: new module

#3996 - Bump t-coffee version

Pull Request - State: closed - Opened by JoseEspinosa about 1 year ago - 1 comment

#3995 - Bump tcoffee version

Issue - State: closed - Opened by JoseEspinosa about 1 year ago
Labels: hackathon2023

#3994 - fix python on aws

Pull Request - State: closed - Opened by mashehu about 1 year ago

#3993 - new module: openms/idfilter

Issue - State: closed - Opened by jonasscheid about 1 year ago
Labels: new module

#3992 - new module: openms/peakpickerhires

Issue - State: closed - Opened by jonasscheid about 1 year ago
Labels: new module

#3991 - new module: openms/idmerger

Issue - State: open - Opened by jonasscheid about 1 year ago
Labels: new module

#3990 - new module: openms/decoydatabase

Issue - State: closed - Opened by jonasscheid about 1 year ago
Labels: new module

#3989 - Feat/abricate nf tests

Pull Request - State: open - Opened by sateeshperi about 1 year ago
Labels: nf-test

#3988 - Test the testing with dummy PR

Pull Request - State: open - Opened by mashehu about 1 year ago - 2 comments

#3987 - add python to GITHUB_PATH

Pull Request - State: closed - Opened by mashehu about 1 year ago - 1 comment

#3986 - fix second miniconda setup step

Pull Request - State: closed - Opened by mashehu about 1 year ago

#3985 - nextflowpipelineutils: strict tests

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#3984 - New module: GEM3/gem3mapper

Pull Request - State: open - Opened by miqalvarez about 1 year ago - 1 comment
Labels: new module, Ready for Review

#3983 - complete available parabricks tools

Issue - State: open - Opened by Furentsu about 1 year ago - 2 comments

#3982 - Broken Conda `unicycler` test

Issue - State: open - Opened by muffato about 1 year ago
Labels: bug, tests

#3981 - Deeptmhmm

Pull Request - State: closed - Opened by vagkaratzas about 1 year ago

#3980 - Add NFVALIDATION_PLUGIN_SUBWORKFLOW for starting pipeline

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#3979 - nf-test consistency enforcing

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 2 comments

#3978 - Fixed the `ffq` tests

Pull Request - State: closed - Opened by muffato about 1 year ago - 3 comments
Labels: tests, update module

#3977 - Fixed the `flye` stub commands

Pull Request - State: closed - Opened by muffato about 1 year ago
Labels: bug, update module

#3976 - Wrong module name in `metaphlan3` test

Pull Request - State: closed - Opened by muffato about 1 year ago
Labels: bug, tests

#3975 - Added optional flow field output and increase version number for cellpose

Pull Request - State: open - Opened by FloWuenne about 1 year ago - 3 comments

#3974 - nf-test for fastq_download_prefetch_fasterqdump_sratools

Pull Request - State: closed - Opened by maxulysse about 1 year ago - 3 comments
Labels: nf-test

#3973 - Subworkflow: NEXTFLOW_PIPELINE_UTILS

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 2 comments

#3972 - switch test.yml to self hosted runners on AWS

Pull Request - State: closed - Opened by mashehu about 1 year ago

#3971 - module goleft/Indexcov.

Pull Request - State: closed - Opened by lindenb about 1 year ago - 5 comments

#3970 - Add flag to zip for following symlinks

Pull Request - State: closed - Opened by pinin4fjords about 1 year ago

#3969 - use dorny/paths-filter with git commands instead of GitHub API

Pull Request - State: closed - Opened by mirpedrol about 1 year ago - 8 comments

#3968 - Add file zipping module

Pull Request - State: closed - Opened by pinin4fjords about 1 year ago

#3967 - Vt/normalize

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module, Ready for Review

#3966 - bump picard

Pull Request - State: closed - Opened by matthdsm about 1 year ago - 3 comments

#3965 - plink2/extract test is broken

Issue - State: open - Opened by muffato about 1 year ago
Labels: bug

#3964 - nf-test custom/sratoolsncbisettings

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#3963 - simpler test for custom/dumpsoftwareversions

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#3962 - Add gfatools stat

Pull Request - State: closed - Opened by mahesh-panchal about 1 year ago

#3961 - new module: vt/normalize

Issue - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module

#3960 - [FEATURE] Be smarter about the test we want to skip

Issue - State: open - Opened by maxulysse about 1 year ago - 2 comments

#3958 - new module: GFATOOLS/STAT

Issue - State: closed - Opened by mahesh-panchal about 1 year ago
Labels: new module

#3957 - Add gfatools/gfa2fa

Pull Request - State: closed - Opened by mahesh-panchal about 1 year ago

#3956 - deeptmhmm module init

Pull Request - State: closed - Opened by vagkaratzas about 1 year ago

#3955 - allow tools with no DOI available

Pull Request - State: closed - Opened by mashehu about 1 year ago

#3954 - new module: GFATOOLS/GFA2FA

Issue - State: closed - Opened by mahesh-panchal about 1 year ago
Labels: new module

#3953 - New modules: vt/decompose

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module, Ready for Review

#3952 - new module: vt/decompose

Issue - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module

#3951 - Added hmmer/hmmfetch module

Pull Request - State: closed - Opened by erikrikarddaniel about 1 year ago - 1 comment

#3950 - new module: modkit/pileup

Issue - State: open - Opened by remiolsen about 1 year ago - 2 comments
Labels: new module

#3949 - minimap2/align: unquote the "$reads" var in main.nf

Issue - State: open - Opened by srusher about 1 year ago
Labels: bug

#3948 - Added nf-test for custom/dumpsoftwareversions

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#3947 - add syntax highlighting for .nf.test scripts

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#3946 - add sratools/fasterqdump nf-test tests

Pull Request - State: closed - Opened by maxulysse about 1 year ago - 1 comment

#3945 - Add gfastats test

Pull Request - State: closed - Opened by mahesh-panchal about 1 year ago

#3944 - Improve tests for sratools/prefetch

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#3943 - test self-hosted

Pull Request - State: open - Opened by mashehu about 1 year ago
Labels: WIP

#3942 - Emboss revseq

Pull Request - State: closed - Opened by erikrikarddaniel about 1 year ago

#3941 - new module: survivor/simsv

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago

#3940 - Output parameterised Rmd from RMARKDOWNNOTEBOOK

Pull Request - State: closed - Opened by pinin4fjords about 1 year ago

#3939 - new module: survivor/simsv

Issue - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module

#3938 - CHORES: Move pytest to nf-test for sratools/prefetch

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#3937 - [FEATURE] port pytest to nf-test for sarek modules

Issue - State: open - Opened by maxulysse about 1 year ago
Labels: nf-test

#3936 - [FEATURE] port pytest to nf-test for rnavar modules

Issue - State: open - Opened by maxulysse about 1 year ago - 1 comment
Labels: nf-test

#3935 - [FEATURE] port pytest to nf-test for rnaseq modules

Issue - State: open - Opened by maxulysse about 1 year ago
Labels: nf-test

#3934 - [FEATURE] port pytest to nf-test for fetchngs modules

Issue - State: open - Opened by maxulysse about 1 year ago
Labels: nf-test

#3933 - Add cnvnator

Pull Request - State: closed - Opened by ramprasadn about 1 year ago

#3932 - update fastqc version and snapshot to `0.12.1`

Pull Request - State: closed - Opened by sateeshperi about 1 year ago - 1 comment
Labels: Ready for Review

#3931 - New module: truvari/bench

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago

#3930 - new module: truvari/refine

Issue - State: open - Opened by nvnieuwk about 1 year ago
Labels: new module

#3929 - new module: truvari/bench

Issue - State: closed - Opened by nvnieuwk about 1 year ago
Labels: new module

#3928 - bump samtools modules

Pull Request - State: open - Opened by matthdsm about 1 year ago - 1 comment

#3927 - Update mitohifi findreference

Pull Request - State: closed - Opened by mahesh-panchal about 1 year ago
Labels: Ready for Review