Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nf-core/modules issues and pull requests

#4201 - Convert Kraken2 tests to nf-test

Pull Request - State: open - Opened by Aratz about 1 year ago
Labels: Ready for Review, nf-test

#4200 - Nf-test rtgtools/rocplot

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago
Labels: Ready for Review, nf-test

#4199 - Genome gtf update

Pull Request - State: closed - Opened by JackCurragh about 1 year ago - 1 comment

#4198 - Nf-test tests for vardictjava

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago - 1 comment
Labels: nf-test

#4196 - new module gridss GeneratePonBedpe

Pull Request - State: open - Opened by kubranarci about 1 year ago - 1 comment
Labels: new module, Ready for Review

#4193 - Change logic of mitohifi/mitohifi api

Pull Request - State: closed - Opened by ksenia-krasheninnikova about 1 year ago - 9 comments

#4192 - add_module_arriba_visualisation

Pull Request - State: open - Opened by peterpru about 1 year ago

#4191 - Tcoffee seqreformat

Pull Request - State: closed - Opened by luisas about 1 year ago

#4190 - Bug: nf-test bam_sort_stats_samtools

Pull Request - State: open - Opened by Joon-Klaps about 1 year ago
Labels: bug, Ready for Review, nf-test

#4189 - Genome gtf

Pull Request - State: open - Opened by JackCurragh about 1 year ago - 7 comments
Labels: tests

#4188 - Homo sapiens Genome.gtf test-dataset is invalid

Issue - State: open - Opened by JackCurragh about 1 year ago
Labels: bug

#4187 - Missing "dbtype" argument to makeblastdb

Issue - State: open - Opened by jonbra about 1 year ago
Labels: bug

#4186 - Blast

Pull Request - State: closed - Opened by vagkaratzas about 1 year ago

#4185 - filtlong: add nf-test

Pull Request - State: open - Opened by koenbossers about 1 year ago - 9 comments
Labels: nf-test

#4184 - filtlong: add nf-test

Issue - State: open - Opened by koenbossers about 1 year ago
Labels: nf-test

#4183 - Clean up after the merge cowboy

Pull Request - State: open - Opened by Emiller88 about 1 year ago

#4182 - chopper: add nf-test

Pull Request - State: closed - Opened by koenbossers about 1 year ago - 1 comment
Labels: Ready for Review, nf-test

#4181 - update yaml schema with new maintainers field

Pull Request - State: closed - Opened by mashehu about 1 year ago

#4180 - add nf-test to module chopper

Issue - State: closed - Opened by koenbossers about 1 year ago
Labels: nf-test

#4179 - biobambam/bamsormadup: add meta to fasta input

Pull Request - State: closed - Opened by matthdsm about 1 year ago - 2 comments

#4178 - fix PE inputs

Pull Request - State: closed - Opened by matthdsm about 1 year ago

#4177 - fix `no locator available for file` error

Pull Request - State: closed - Opened by mashehu about 1 year ago

#4176 - new module: picard/samtofastq

Issue - State: open - Opened by kelly-sovacool about 1 year ago - 1 comment
Labels: new module

#4173 - authors => maintainers

Pull Request - State: closed - Opened by Emiller88 about 1 year ago - 10 comments

#4169 - dragonflye: add nf-test

Pull Request - State: closed - Opened by koenbossers about 1 year ago - 1 comment
Labels: Ready for Review, nf-test

#4167 - dragonflye: add nf-test

Issue - State: closed - Opened by koenbossers about 1 year ago
Labels: nf-test

#4166 - new module: clame

Pull Request - State: open - Opened by alxndrdiaz about 1 year ago
Labels: new module, hackathon2023

#4163 - Complete nf-test for assemblyscan

Pull Request - State: closed - Opened by koenbossers about 1 year ago
Labels: Ready for Review, nf-test

#4156 - Pigzip

Pull Request - State: open - Opened by lrauschning about 1 year ago - 5 comments

#4155 - Add nf-test to medaka

Pull Request - State: closed - Opened by dialvarezs about 1 year ago

#4153 - medaka: add nf-test

Issue - State: closed - Opened by dialvarezs about 1 year ago
Labels: nf-test

#4152 - gffread nucleotide to protein

Issue - State: open - Opened by chriswyatt1 about 1 year ago
Labels: new module

#4148 - Glimpse nftest tag

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago - 1 comment

#4146 - Feat/bam_dedup_stats_samtools nf-test

Pull Request - State: open - Opened by Joon-Klaps about 1 year ago - 1 comment
Labels: nf-test

#4143 - Flye nf test

Pull Request - State: closed - Opened by koenbossers about 1 year ago
Labels: nf-test

#4140 - Add nf-test to BWA modules

Pull Request - State: closed - Opened by dialvarezs about 1 year ago

#4139 - Feat/bam_sort_stats_samtools nf-test

Pull Request - State: closed - Opened by Joon-Klaps about 1 year ago
Labels: Ready for Review, nf-test

#4138 - Feat/bam_stats_samtools subw nf-test

Pull Request - State: open - Opened by Joon-Klaps about 1 year ago - 5 comments
Labels: Ready for Review, nf-test

#4137 - Add untar nf-tests

Pull Request - State: open - Opened by KamilMaliszArdigen about 1 year ago - 2 comments
Labels: Ready for Review, hackathon2023, nf-test

#4136 - Ucsc/bedgraphtobigwig nftest

Pull Request - State: closed - Opened by laramiellindsey about 1 year ago - 5 comments
Labels: Do not merge yet

#4135 - fix ownership for nf-test and adding est-sfs module (#4049)

Pull Request - State: closed - Opened by BioInf2305 about 1 year ago - 1 comment

#4134 - Bump shinyngs modules to pull in recent updates

Pull Request - State: closed - Opened by pinin4fjords about 1 year ago - 1 comment

#4131 - Feat/bbmap_bbsplit nf-test

Pull Request - State: open - Opened by Joon-Klaps about 1 year ago - 1 comment
Labels: Do not merge yet, nf-test

#4128 - See if ngscheckmate is passing tests

Pull Request - State: closed - Opened by SPPearce about 1 year ago - 9 comments

#4126 - flye: add nf-test

Issue - State: closed - Opened by koenbossers about 1 year ago
Labels: nf-test

#4125 - new module: kaiju/mkfmi

Pull Request - State: closed - Opened by alxndrdiaz about 1 year ago - 2 comments
Labels: new module, hackathon2023

#4124 - Newmodule longstitch

Pull Request - State: open - Opened by scorreard about 1 year ago

#4122 - Newmodule yak

Pull Request - State: open - Opened by scorreard about 1 year ago

#4121 - Update module hifiasm

Pull Request - State: open - Opened by scorreard about 1 year ago

#4117 - VCF impute sbwf nf-test

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago
Labels: nf-test

#4114 - Renovate migrate

Pull Request - State: closed - Opened by Emiller88 about 1 year ago
Labels: hackathon2023

#4113 - samtools_sort nf-test migration

Pull Request - State: closed - Opened by MarieLataretu about 1 year ago

#4111 - WIP: Adding Dragen module

Pull Request - State: open - Opened by marrip about 1 year ago - 2 comments

#4107 - add nf-test to bwa

Issue - State: closed - Opened by dialvarezs about 1 year ago
Labels: nf-test

#4105 - Glimpse concordance nftest

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago - 1 comment
Labels: nf-test

#4104 - nf-test for module sourmash/sketch

Pull Request - State: closed - Opened by koenbossers about 1 year ago

#4098 - Add nf-test to nanoplot, and bump version

Pull Request - State: closed - Opened by dialvarezs about 1 year ago

#4097 - nf-test for module fastqscan

Pull Request - State: closed - Opened by koenbossers about 1 year ago

#4094 - Why are branches that are out of date showing so many changes

Issue - State: closed - Opened by Emiller88 about 1 year ago - 3 comments
Labels: bug

#4091 - Add nf-test to glimpse_sample

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago - 1 comment
Labels: nf-test

#4090 - gunzip

Issue - State: closed - Opened by laramiellindsey about 1 year ago - 2 comments

#4089 - nanoplot: migrate to nf-test

Issue - State: closed - Opened by dialvarezs about 1 year ago

#4088 - Umitools/extract nf test

Pull Request - State: open - Opened by laramiellindsey about 1 year ago - 4 comments

#4087 - Feat/cat_fastq nf-test

Pull Request - State: closed - Opened by Joon-Klaps about 1 year ago - 3 comments
Labels: Ready for Review, nf-test

#4081 - Rasusa nf test

Pull Request - State: closed - Opened by koenbossers about 1 year ago - 2 comments
Labels: nf-test

#4080 - Replace mulled containers with wave

Pull Request - State: open - Opened by Emiller88 about 1 year ago - 11 comments

#4079 - Move conda environment to yml

Pull Request - State: closed - Opened by Emiller88 about 1 year ago - 7 comments

#4078 - Move conda to yaml env files

Issue - State: closed - Opened by Emiller88 about 1 year ago

#4073 - Add Haplotypecaller to Parabricks module

Pull Request - State: open - Opened by Furentsu about 1 year ago - 2 comments

#4072 - Migration test cutadapt

Pull Request - State: open - Opened by mauro-saporita about 1 year ago - 1 comment

#4066 - lint and test runs work

Pull Request - State: closed - Opened by kubranarci about 1 year ago - 6 comments
Labels: Ready for Review

#4061 - Mlst nf test and version bump to 2.23

Pull Request - State: closed - Opened by koenbossers about 1 year ago - 3 comments
Labels: Ready for Review, nf-test

#4060 - 2804 new module kmc

Pull Request - State: open - Opened by homonecloco about 1 year ago
Labels: hackathon2023

#4057 - Add CheckM2 module

Pull Request - State: open - Opened by dialvarezs about 1 year ago - 3 comments

#4054 - added tcoffee/alncompare module

Pull Request - State: open - Opened by l-mansouri about 1 year ago

#4048 - Glimpse ligate nftest

Pull Request - State: open - Opened by LouisLeNezet about 1 year ago

#4047 - New module: NCBI datasets download

Pull Request - State: open - Opened by koenbossers about 1 year ago
Labels: new module, Ready for Review, nf-test

#4046 - Split tags across repo and gather during CI

Pull Request - State: open - Opened by adamrtalbot about 1 year ago

#4045 - Glimpse phase nftest

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago
Labels: nf-test

#4044 - [FEATURE] Use Groovy to unpack compressed tar.gz files

Issue - State: open - Opened by adamrtalbot about 1 year ago

#4043 - style: Fix red - at the end of snapshots

Pull Request - State: closed - Opened by Emiller88 about 1 year ago

#4042 - Set snapshots as generated

Pull Request - State: closed - Opened by Emiller88 about 1 year ago

#4041 - added Muscle5 super5 module

Pull Request - State: closed - Opened by alessiovignoli about 1 year ago - 1 comment

#4040 - Feat/hisat2 nf tests

Pull Request - State: open - Opened by sateeshperi about 1 year ago
Labels: nf-test

#4039 - added dumpsoftwareversions.groovy

Pull Request - State: open - Opened by ThiboVanderkam about 1 year ago - 1 comment

#4038 - added nf-test files for art/illumina

Pull Request - State: open - Opened by MarieLataretu about 1 year ago
Labels: nf-test

#4037 - Fix custom/dumpsoftwareversions test

Pull Request - State: open - Opened by adamrtalbot about 1 year ago

#4036 - new module: VecScreen

Issue - State: open - Opened by eeaunin about 1 year ago
Labels: new module

#4035 - Fix renovate onboarding

Pull Request - State: closed - Opened by Emiller88 about 1 year ago

#4034 - Glimpse chunk nftest

Pull Request - State: open - Opened by LouisLeNezet about 1 year ago - 1 comment
Labels: nf-test

#4033 - custom dumpsoftwareversion test fix

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago

#4032 - Update renovate.json5

Pull Request - State: closed - Opened by maxulysse about 1 year ago

#4031 - cutadapt: nf-test migration

Issue - State: open - Opened by mauro-saporita about 1 year ago

#4030 - add module openms/decoydatabase

Pull Request - State: closed - Opened by jonasscheid about 1 year ago

#4029 - art/illumina nf-test migration

Issue - State: open - Opened by MarieLataretu about 1 year ago

#4028 - Feat/fastp nf-test

Pull Request - State: closed - Opened by Joon-Klaps about 1 year ago - 1 comment
Labels: Ready for Review, nf-test

#4027 - Add NFCORE_PIPELINE_UTILS subworkflow

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago