nf-core/metatdenovo issues and pull requests

#107 - Cat taxonomy module

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#106 - new module for merging tables output

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 2 comments

#105 - Taxonomy summary

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#104 - Cosmetics outputs

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#103 - Remove use of unpigz and fix some tests

Pull Request - State: closed - Opened by emnilsson almost 2 years ago - 1 comment

#102 - Format spades output with a new module

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#101 - Populate megahit channel

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#100 - new eukulele options documentation - Happy 100th PR! 🎉

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#99 - Add an eggnog summary for statistics

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#98 - Prokka fails for rnaspades

Issue - State: closed - Opened by emnilsson almost 2 years ago - 3 comments
Labels: bug

#97 - Multi eukulele now works with or without eukulele database name

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#96 - Rework collect stats

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#95 - Fix rnaspades

Pull Request - State: closed - Opened by erikrikarddaniel almost 2 years ago - 2 comments

#94 - Diginorm fails on sample 3 in the test

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 2 comments
Labels: bug

#93 - Code go thru

Pull Request - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment

#92 - Add KOfam_scan

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: enhancement

#91 - Are there more MultiQC things?

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: enhancement

#90 - Fix eukulele multi call

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#89 - fix bug issue #88

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#88 - Cat-ting after `prokka` only happens for one file when `--assembly`?

Issue - State: closed - Opened by emnilsson almost 2 years ago - 4 comments
Labels: bug

#87 - Prokka and prodigal modules update

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#86 - prodigal output not coherent with orf id

Issue - State: closed - Opened by danilodileo almost 2 years ago - 9 comments
Labels: bug, enhancement

#85 - add map to prokka output

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#84 - CAT/BAT

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: enhancement

#83 - `hmmsearch` gets called for every individual faa file from Prokka

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: bug

#82 - Eukulele called in the wrong way with user assembly

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: bug

#81 - Add a new line in test samplesheet for cat_fastq

Issue - State: closed - Opened by danilodileo almost 2 years ago
Labels: enhancement

#80 - Assembly entry

Pull Request - State: closed - Opened by erikrikarddaniel almost 2 years ago - 2 comments

#79 - Cat fastq

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 3 comments

#78 - RNASpades called multiple times

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: bug

#77 - Modules update

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 2 comments

#76 - Template

Pull Request - State: closed - Opened by danilodileo almost 2 years ago

#75 - Start pipeline from a finished assembly

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: enhancement

#74 - New template

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 1 comment

#73 - Eggnog gunzip

Pull Request - State: closed - Opened by erikrikarddaniel almost 2 years ago

#72 - Time for a template update!

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: enhancement

#71 - hmmclassify

Pull Request - State: closed - Opened by erikrikarddaniel almost 2 years ago

#70 - Tidy up params in `nextflow.config` and `nextflow_schema.json`

Issue - State: closed - Opened by erikrikarddaniel almost 2 years ago - 1 comment
Labels: bug

#69 - Format tax module updated

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 2 comments

#68 - Multi eukulele

Pull Request - State: closed - Opened by danilodileo almost 2 years ago - 3 comments

#67 - Eggnog table

Pull Request - State: closed - Opened by danilodileo almost 2 years ago

#66 - eukulele gtdb call

Pull Request - State: closed - Opened by danilodileo almost 2 years ago

#65 - prokka_cat subworkflow updated

Pull Request - State: closed - Opened by danilodileo about 2 years ago

#64 - Update diagrams

Pull Request - State: closed - Opened by danilodileo about 2 years ago

#63 - doc usage updated

Pull Request - State: closed - Opened by danilodileo about 2 years ago

#62 - Update modules

Pull Request - State: closed - Opened by danilodileo about 2 years ago

#61 - Fix collect stats

Pull Request - State: closed - Opened by danilodileo about 2 years ago

#60 - Add run-dbcan module

Issue - State: open - Opened by danilodileo about 2 years ago - 1 comment
Labels: enhancement

#58 - create an hmmfiles option

Issue - State: closed - Opened by danilodileo about 2 years ago - 1 comment
Labels: enhancement

#53 - Update README.md

Pull Request - State: closed - Opened by danilodileo about 2 years ago - 2 comments

#52 - Add files via upload

Pull Request - State: closed - Opened by danilodileo about 2 years ago - 3 comments

#48 - `COLLECT_STATS` does not run when `--skip_trimming` is set

Issue - State: closed - Opened by emnilsson over 2 years ago
Labels: bug

#36 - Versions are not reported for `khmer` or `pigz` from the `UNPIGZ_MEGAHIT_CONTIGS`-process

Issue - State: closed - Opened by emnilsson almost 3 years ago - 2 comments
Labels: bug

#35 - Some files are not published in the correct results directories, some files are published even though not specified

Issue - State: closed - Opened by emnilsson almost 3 years ago - 1 comment
Labels: bug

GitHub / nf-core/metatdenovo issues and pull requests