nf-core/imcyto issues and pull requests

#74 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot 9 months ago

#73 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot about 1 year ago - 1 comment

#72 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot about 1 year ago - 1 comment

#71 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#70 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#69 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#68 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#67 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#66 - run_imctools.py metal names are expected to be unique, and have issues if the Channel names are protein listed

Issue - State: open - Opened by arcolombo almost 2 years ago - 1 comment

#65 - Bump versions for CellProfiler and Ilastik

Pull Request - State: closed - Opened by drpatelh about 2 years ago

#64 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago

#63 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago

#62 - Important! Template update for nf-core/tools v2.3.1

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#61 - Important! Template update for nf-core/tools v2.3

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#60 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#59 - not compatible with m1 chip mac？

Issue - State: open - Opened by sailseem almost 3 years ago

#58 - Important! Template update for nf-core/tools v2.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#57 - Important! Template update for nf-core/tools v2.0.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#56 - Important! Template update for nf-core/tools v2.0

Pull Request - State: closed - Opened by KevinMenden almost 3 years ago - 1 comment

#55 - Important! Template update for nf-core/tools v1.14

Pull Request - State: closed - Opened by nf-core-bot about 3 years ago - 1 comment

#54 - problem with the test case

Issue - State: open - Opened by DavidSriker about 3 years ago

#53 - Remove social preview image to use GitHub OpenGraph

Pull Request - State: closed - Opened by maxulysse about 3 years ago

#51 - Important! Template update for nf-core/tools v1.13.3

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#50 - Important! Template update for nf-core/tools v1.13.2

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#49 - Important! Template update for nf-core/tools v1.13.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#48 - Important! Template update for nf-core/tools v1.13

Pull Request - State: closed - Opened by ewels over 3 years ago - 2 comments

#47 - Add new pre-print to main README

Pull Request - State: closed - Opened by drpatelh over 3 years ago - 1 comment

#46 - Update README with citation to preprint describing the imcyto pipeline.

Pull Request - State: closed - Opened by feebs over 3 years ago

#45 - Update CHANGELOG after TEMPLATE merge

Pull Request - State: closed - Opened by drpatelh over 3 years ago

#44 - Important! Template update for nf-core/tools v1.12.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago

#43 - Update CHANGELOG

Pull Request - State: closed - Opened by drpatelh over 3 years ago

#42 - Important! Template update for nf-core/tools v1.12

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago

#41 - imcyto pipeline won't return same output as CellProfiler

Issue - State: open - Opened by SBata over 3 years ago

#40 - request function - restart from custom point in pipeline

Issue - State: closed - Opened by SBata over 3 years ago - 3 comments
Labels: question

#39 - Get tests passing after template update

Pull Request - State: closed - Opened by drpatelh over 3 years ago

#38 - Important! Template update for nf-core/tools v1.11

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago

#37 - Update schema

Pull Request - State: closed - Opened by drpatelh almost 4 years ago

#36 - Fix tests after TEMPLATE merge

Pull Request - State: closed - Opened by drpatelh almost 4 years ago

#35 - Important! Template update for nf-core/tools v1.10.2

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago

#34 - Error when trying to test docker

Issue - State: closed - Opened by algebio about 4 years ago - 5 comments

#33 - Bump version to 1.1.0dev

Pull Request - State: closed - Opened by drpatelh about 4 years ago

#32 - Unify branches

Pull Request - State: closed - Opened by drpatelh about 4 years ago

#31 - Add proper test for --skip_ilastik

Pull Request - State: closed - Opened by drpatelh about 4 years ago

#30 - Remove caching for get_software_versions

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#29 - Dev > Master for first release

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#28 - PR to address first release review comments

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment

#27 - Important! Template update for nf-core/tools v1.9

Pull Request - State: closed - Opened by nf-core-bot over 4 years ago

#26 - Add social preview image

Pull Request - State: closed - Opened by maxulysse over 4 years ago

#25 - Pseudo PR to prepare for release

Pull Request - State: closed - Opened by maxulysse over 4 years ago - 1 comment

#24 - Update template to tools v1.8

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment

#23 - Update TEMPLATE to nf-core/tools version 1.8

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#22 - Merge TEMPLATE from local repo

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment
Labels: WIP

#21 - Update template to tools v1.8

Pull Request - State: closed - Opened by drpatelh over 4 years ago
Labels: WIP

#20 - Update Ilastik container

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#19 - Fix bigtiff error and update imctools container

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment

#18 - Dev > Master

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#17 - Add tests for different types of input format

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#16 - Add GitHub Actions and some template updates

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#15 - Dev

Pull Request - State: closed - Opened by KarishmaVal over 4 years ago

#14 - Update software, docs and NF version

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#13 - Extend to input file formats TXT and OME TIFF

Pull Request - State: closed - Opened by Precancer over 4 years ago - 1 comment

#12 - Ilastik uint16 error

Issue - State: closed - Opened by drpatelh over 4 years ago - 3 comments
Labels: bug

#11 - Update markdownlint checks and add citations.md

Pull Request - State: closed - Opened by drpatelh over 4 years ago

#10 - Update docs

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment

#9 - Update template to v1.7

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 2 comments

#8 - Add test-dataset

Pull Request - State: closed - Opened by drpatelh almost 5 years ago - 1 comment

#7 - Dev > Master

Pull Request - State: closed - Opened by drpatelh almost 5 years ago

#6 - Move container addresses to base.config

Pull Request - State: closed - Opened by drpatelh almost 5 years ago

#5 - Minor bug fix when --skipIlastik is specified

Pull Request - State: closed - Opened by drpatelh almost 5 years ago - 1 comment

#4 - Dev > Master

Pull Request - State: closed - Opened by drpatelh almost 5 years ago

#3 - One container per process and other tweaks

Pull Request - State: closed - Opened by drpatelh almost 5 years ago - 1 comment

#2 - Dev > Master

Pull Request - State: closed - Opened by drpatelh almost 5 years ago

#1 - Template merge

Pull Request - State: closed - Opened by drpatelh almost 5 years ago - 1 comment

GitHub / nf-core/imcyto issues and pull requests