Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nf-core/hicar issues and pull requests

#99 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot about 1 year ago

#98 - Ver2rc

Pull Request - State: open - Opened by jianhong about 1 year ago - 1 comment

#97 - export more cutadapt parameters.

Pull Request - State: open - Opened by jianhong about 1 year ago - 1 comment

#96 - Fix multiple minor typos for review comments.

Pull Request - State: closed - Opened by jianhong about 1 year ago - 2 comments

#95 - Dev move subsetloops script to bin

Pull Request - State: open - Opened by jianhong about 1 year ago - 1 comment

#94 - Dev remove getscale

Pull Request - State: open - Opened by jianhong about 1 year ago - 5 comments

#93 - fix the meta id issue.

Pull Request - State: closed - Opened by jianhong about 1 year ago - 1 comment

#92 - fix a issue in if id contains dots.

Pull Request - State: closed - Opened by jianhong about 1 year ago - 3 comments

#91 - move trimbedgraph source to bin folder.

Pull Request - State: open - Opened by jianhong about 1 year ago - 2 comments

#90 - Dev remove output folder from config file

Pull Request - State: closed - Opened by jianhong about 1 year ago - 1 comment

#89 - Dev

Pull Request - State: closed - Opened by jianhong about 1 year ago - 4 comments

#88 - answer the comments for the release review

Pull Request - State: closed - Opened by jianhong about 1 year ago - 7 comments

#87 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago

#86 - merge the dev to master to 2.0 version release

Pull Request - State: open - Opened by jianhong over 1 year ago - 3 comments

#85 - Prepare for release v2

Pull Request - State: closed - Opened by jianhong over 1 year ago - 6 comments

#84 - rename Dev2 to Dev

Pull Request - State: closed - Opened by jianhong over 1 year ago - 2 comments

#83 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago

#82 - ERROR with step of MAPS_PEAK:MAPS_RAW2BG2

Issue - State: closed - Opened by realzhang over 1 year ago - 2 comments
Labels: bug

#81 - update paths

Pull Request - State: closed - Opened by FriederikeHanssen over 1 year ago

#80 - .hic file produced by hicar could not be opened by juicebox

Issue - State: closed - Opened by Rhine86 over 1 year ago - 2 comments

#79 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#78 - Dev2

Pull Request - State: closed - Opened by jianhong almost 2 years ago - 4 comments

#77 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#76 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#75 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#74 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 2 comments

#73 - the pipeline breaks often and the test sets is not working either

Issue - State: closed - Opened by ILM-MLOlab about 2 years ago - 1 comment
Labels: bug

#72 - error in evaluating the argument 'args' in selecting a method for function 'do.call'

Issue - State: closed - Opened by shangguandong1996 over 2 years ago - 1 comment
Labels: bug

#71 - add a option can directly use local juicer tool and py script

Issue - State: closed - Opened by shangguandong1996 over 2 years ago - 2 comments
Labels: enhancement

#70 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#69 - update the zenodo doi.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#68 - Update the changelog and readme files

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#67 - update CHANGELOG to trigger change in dev.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#66 - DO NOT MERGE

Pull Request - State: closed - Opened by jfy133 over 2 years ago - 2 comments

#65 - DO NOT MERGE - GHA TEST

Pull Request - State: closed - Opened by jfy133 over 2 years ago - 2 comments

#64 - Prepare for release

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#63 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 3 comments

#62 - PR from master to dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#61 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#60 - fix a bug in post_counts for hipeak when there is empty interactions …

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#59 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#58 - remove the -S parameter for sort in shiftreads and mergereads.nf

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#57 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#56 - adjust resource requirement. add parameter for JUICER to avoid the no…

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#55 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#54 - update the max_memory for defaults and juicer_jvm_params

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#53 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago

#52 - Remove max_* params from test_full

Pull Request - State: closed - Opened by ewels over 2 years ago - 2 comments

#51 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#50 - change the test_full_aws to test_full.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#49 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#48 - fix-tower-action

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#47 - Fix awsfulltest.yml

Pull Request - State: closed - Opened by ewels over 2 years ago - 1 comment

#46 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#45 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago

#44 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago

#43 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#42 - Important! Template update for nf-core/tools v2.3.1

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago

#41 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#40 - update max_time for test_full_aws.config

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#39 - update max_time for test_full_aws.config

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#38 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#37 - update max_time for test_full_aws.config

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#36 - Important! Template update for nf-core/tools v2.3

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#35 - merge from Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#34 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#33 - change the full datasets.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#32 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#31 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#30 - Prepare for release

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#29 - Prepare for release.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#28 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#27 - fix overflow issue for assign_type.nf

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#26 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#25 - fix the bug with updated wigtobigwig

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#24 - fix a bug introduced by updated modules.

Pull Request - State: closed - Opened by jianhong over 2 years ago - 2 comments

#23 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#22 - Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#21 - merging from Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#20 - Fix the missing report files of multiQC

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#19 - merging from Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#18 - merging upstream Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#17 - merge Dev to master

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#16 - merge upstream Dev

Pull Request - State: closed - Opened by jianhong over 2 years ago - 1 comment

#15 - Merge from Dev

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#14 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#13 - Add pytest for local subworkflow

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#12 - merge Dev to Master

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#11 - Dev

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#10 - Dev > master

Pull Request - State: closed - Opened by ewels almost 3 years ago - 1 comment

#9 - Fix multiple issue according @mahesh-panchal 's comment

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#8 - Dev > Master for pseudo-PR review

Pull Request - State: closed - Opened by ewels almost 3 years ago - 1 comment

#7 - merge

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 6 comments

#6 - Dev > master

Pull Request - State: closed - Opened by ewels almost 3 years ago - 1 comment

#5 - pull from jianhong/nf-core-hicar to nf-cocre/hicar@dev

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 1 comment

#4 - update for PR2

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 5 comments

#3 - updates for PR[#2](https://github.com/nf-core/hicar/pull/2)

Pull Request - State: closed - Opened by jianhong almost 3 years ago - 3 comments

#2 - PSEUDO PR - DO NOT MERGE

Pull Request - State: closed - Opened by ewels almost 3 years ago - 35 comments
Labels: WIP, help wanted

#1 - PSEUDO PR - DO NOT MERGE

Pull Request - State: closed - Opened by ewels almost 3 years ago - 2 comments
Labels: help wanted