nf-core/genomeassembler issues and pull requests

#51 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot about 1 year ago

#50 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#49 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 5 comments

#48 - Merging template updates 2.7.2

Pull Request - State: closed - Opened by d4straub over 1 year ago - 6 comments

#47 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago

#46 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 2 comments

#45 - Add assembly weighting to automatically select best X assemblies for further processing.

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#44 - Quarto slide-show of results

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#43 - [Subworkflow] Workflow to prepare assembly for Sanger Rapid Curation Submission

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#42 - [Subworkflows] Add Falco to subworkflows using FastQC

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#41 - [Subworkflow] Contamination search and removal

Issue - State: closed - Opened by mahesh-panchal almost 2 years ago - 2 comments
Labels: enhancement

#40 - [Subworkflow] Enhance evaluate gene space to separately download busco lineages

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#39 - Annotation track outputs

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#38 - [Subworkflow] Read consistency workflow

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#37 - [Subworkflow] Purge duplications

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#36 - [Subworkflow] Flye

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#35 - [Subworkflow] PacBio's IPA

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#34 - [Subworkflow] HiCanu

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#33 - [Subworkflow] NextDenovo

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#32 - [Subworkflow] HiFiAsm

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#31 - [Subworkflow] Render assembly graph with labels

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#30 - [Subworkflow] PacBio Organelle filtering

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#29 - [Subworkflow] HiC scaffolding workflow

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#28 - [Subworkflow] HiC alignment workflow

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#27 - [Subworkflow] Illumina subsampling / normalization workflow

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#26 - [Subworkflow] Nanopore adapter trimming and read filtering

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#25 - [Subworkflow] PacBio adapter trimming and read filtering

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#24 - [Subworkflow] Illumina adapter trimming and read filtering

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#23 - Workflow summary should take into account settings defined by yaml file.

Issue - State: open - Opened by mahesh-panchal almost 2 years ago - 1 comment
Labels: enhancement, help wanted

#22 - Documentation for GenomeScope2/GeneScopeFK

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#21 - Document interpretation of purge dups output

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#20 - [Subworkflow] Library comparison

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#19 - Speed up test

Pull Request - State: closed - Opened by d4straub almost 2 years ago - 8 comments

#18 - [Subworkflow] Isoseq alignment

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#17 - [Subworkflow] Star RNAseq alignment

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#16 - [Subworkflow] Fetch genome property estimates from GOAT

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#15 - Document FastQC/Falco output

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#14 - Document Quast output interpretation

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#13 - Document Busco output interpretation

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#12 - Add links to complementary workflows

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#11 - Add how to interpret Merqury/MerquryFK output

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#10 - Add explanation of how to interpret GenomeScope2/GeneScopeFK output

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: documentation, enhancement

#9 - Find suitable full size dataset to run on AWS

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#8 - Find suitable data for a profile test

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#7 - Add MultiQC report

Issue - State: open - Opened by mahesh-panchal almost 2 years ago
Labels: enhancement

#6 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#5 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#4 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 3 comments

#3 - Quality check workflows

Pull Request - State: closed - Opened by mahesh-panchal about 2 years ago - 11 comments

#2 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#1 - Add Prepare input workflow

Pull Request - State: closed - Opened by mahesh-panchal over 2 years ago - 8 comments

GitHub / nf-core/genomeassembler issues and pull requests