Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/fetchngs issues and pull requests
#237 - update utils subworfklows with nf-core/modules version of it
Pull Request -
State: open - Opened by maxulysse about 1 year ago
- 2 comments
#236 - Pipeline fails for large studies
Issue -
State: open - Opened by alexblaessle about 1 year ago
Labels: bug
#235 - FEAT: Pass scientific name as input to download the data
Issue -
State: open - Opened by maxulysse about 1 year ago
#232 - Remove duplicate tests
Pull Request -
State: closed - Opened by maxulysse about 1 year ago
- 1 comment
#231 - Release candidate 1.11.0
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#230 - Prepare 1.11.0 RC
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 2 comments
#229 - use wget instead of curl
Pull Request -
State: open - Opened by suhrig over 1 year ago
- 1 comment
#228 - fix sratools and fewer ids
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#227 - fix sratools
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#226 - Replace CUSTOM_DUMPSOFTWAREVERSIONS with collectFile operator
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 3 comments
#225 - Fix all
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#224 - Update nextflowpipelineutils
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#223 - Use nf-core subworkflow: NFCORE_PIPELINE_UTILS
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#222 - Use nf-core nfvalidation subworkflow
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#221 - SRAtools download seems to insert paired-end suffix into workdir path
Issue -
State: open - Opened by dmalzl over 1 year ago
- 2 comments
Labels: bug
#220 - Add_minleghth_0_fasterq_dump
Pull Request -
State: closed - Opened by robsyme over 1 year ago
- 2 comments
#219 - Update modules + tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 3 comments
#218 - Update workflows tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#217 - Tag and path updates for nf-test files
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
#216 - add pipeline level tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 3 comments
#215 - FIX: custom/dumpsoftwareversions
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 3 comments
#214 - update modules and tests + fix linting
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#213 - Remove lib directory and replace with atomic subworkflows
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#212 - Per module/subworkflow tags.yml file
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 7 comments
#211 - Bump pipeline version to 1.11.0dev
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#210 - Update CHANGELOG.md
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#209 - Minor pre-release tweaks and bug fixes
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#208 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#207 - Prepare release 1.10.1
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 4 comments
#206 - More code polish in dev before release
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#205 - move scripts + remove public_aws_ecr profile
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#204 - Trying out initialise
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 4 comments
#203 - fix path to file to include and update snapshots
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#202 - forgot this file
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#201 - nf-test POC
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 3 comments
#200 - restore nf-test tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#199 - Restore nf-test tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#198 - remove all the nf-test logic from the refactor branch
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 2 comments
#197 - Revert nf-test related changes
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 2 comments
#196 - Add compatibility with sarek samplesheet
Issue -
State: open - Opened by FriederikeHanssen over 1 year ago
Labels: enhancement
#195 - Recursively inherit configs
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 2 comments
#194 - error executing process
Issue -
State: open - Opened by Kiliankleemann over 1 year ago
- 2 comments
Labels: bug
#193 - FEAT: add changes
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#192 - update tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 2 comments
#191 - Update SRA workflow tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 5 comments
#190 - tiny refactor
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#189 - Move out multiQC and versions
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#188 - Refactor POC
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 5 comments
#187 - Fix tests
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#186 - split up config files to be more modular
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#185 - remove public_aws_ecr
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 1 comment
#184 - Adds emit statement for FASTQs and metadata to SRA workflow
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#183 - Restructure local modules and main script names
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 2 comments
#182 - Fix/restructured nf tests
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
Labels: enhancement
#181 - TypeError: unsupported operand type(s) for |: 'dict' and 'dict'
Issue -
State: open - Opened by VangelisTheodorakis over 1 year ago
#180 - sra_ids_to_runinfo.py: command not found
Issue -
State: open - Opened by ollieeknight over 1 year ago
Labels: bug
#179 - Failed to pull singularity image
Issue -
State: open - Opened by BeckmannA over 1 year ago
- 1 comment
Labels: bug
#178 - restructure workflows, nf-tests and ci
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
Labels: enhancement
#177 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 2 comments
#176 - update changelog
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
#175 - Adopt nf-test for pipeline CI testing
Issue -
State: closed - Opened by sateeshperi over 1 year ago
Labels: enhancement
#174 - bump version
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 3 comments
#173 - Add compatibility for sralite files
Issue -
State: closed - Opened by wzheng0520 over 1 year ago
Labels: bug
#172 - CI dynamic matrix.nextflow versions based on target branch
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
#171 - updated usage with info on downloading 10X data.
Pull Request -
State: closed - Opened by davidecarlson over 1 year ago
- 2 comments
#170 - sra_runinfo_to_ftp.py: Avoid dependency on Python 3.8
Pull Request -
State: closed - Opened by MCMandR over 1 year ago
- 5 comments
#169 - download of big files time out and don't resume
Issue -
State: open - Opened by suhrig over 1 year ago
- 6 comments
Labels: bug
#168 - CI-skip-condition-action
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
#167 - CI-include-strategy-nxf-ver-pr-target
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
Labels: WIP
#166 - Release Candidate 1.10.1
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 10 comments
Labels: enhancement
#165 - CI-disable-pr-commenter-ref-dev
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 2 comments
#164 - Fix/snap updates
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 4 comments
#163 - Fix/ci fixes
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 2 comments
#162 - SRA prefetch gets sralite file but fasterq-dump can't find it
Issue -
State: open - Opened by SCDealy over 1 year ago
- 3 comments
Labels: bug
#161 - Bump pipeline version to 1.11.0dev
Pull Request -
State: closed - Opened by ejseqera over 1 year ago
- 1 comment
#160 - fix: container images for AWS corrected
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#159 - Dev -> Master for 1.10.0 release
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 2 comments
#158 - [ERROR] Please provide a valid value for --ena_metadata_fields!
Issue -
State: closed - Opened by QuangOngCM over 1 year ago
- 1 comment
Labels: bug
#157 - Add public_aws_ecr.config and use in CI tests
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 3 comments
#156 - Set a default docker registry outside of profile scope.
Pull Request -
State: closed - Opened by robsyme over 1 year ago
- 1 comment
#155 - Add support back in for GEO IDs
Pull Request -
State: closed - Opened by ejseqera over 1 year ago
- 5 comments
#154 - [ERROR] Please provide a valid value for --ena_metadata_fields!
Issue -
State: closed - Opened by sirclockalot over 1 year ago
- 3 comments
Labels: bug
#153 - Update nextflow_schema.json
Pull Request -
State: closed - Opened by sirclockalot over 1 year ago
#152 - Add support for dbGAP data with JWT
Pull Request -
State: closed - Opened by ejseqera over 1 year ago
- 1 comment
Labels: enhancement
#151 - Feat/implement nf tests
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 4 comments
Labels: enhancement
#150 - Add multi-cloud CI for full-sized tests
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 2 comments
#149 - Pre-release fixes
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#148 - fix: default metadata fields for ENA API v2.0
Pull Request -
State: closed - Opened by ejseqera over 1 year ago
- 2 comments
Labels: bug
#147 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 2 comments
#146 - Add support to download 10X Genomics data
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 3 comments
#145 - Enable download of files form 10X Genomics experiments
Pull Request -
State: closed - Opened by FelixKrueger over 1 year ago
- 3 comments
#144 - Add support to download 10X Genomics data
Issue -
State: closed - Opened by FelixKrueger over 1 year ago
Labels: enhancement
#143 - "Local executor requires the use of POSIX compatible file system" with latest Nextflow
Issue -
State: closed - Opened by pinin4fjords almost 2 years ago
- 4 comments
Labels: bug
#142 - sra_ids_to_runinfo.py: command not found
Issue -
State: closed - Opened by ollieeknight almost 2 years ago
- 2 comments
Labels: bug
#141 - A DataflowVariable can only be assigned once
Issue -
State: closed - Opened by artur-matysik almost 2 years ago
- 1 comment
Labels: bug
#140 - Modules update
Pull Request -
State: closed - Opened by robsyme almost 2 years ago
- 2 comments
#139 - Deal with accessions with non-existing files
Issue -
State: closed - Opened by bmlab-sg almost 2 years ago
- 5 comments
Labels: enhancement
#138 - Support for dbGAP
Issue -
State: closed - Opened by bhodkins almost 2 years ago
- 4 comments
Labels: enhancement
#137 - Conda is ok but singularity failed
Issue -
State: closed - Opened by lindenb almost 2 years ago
- 4 comments
Labels: bug
#136 - Bump pipeline version to 1.10dev
Pull Request -
State: closed - Opened by drpatelh about 2 years ago
- 1 comment