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GitHub / nf-core/fastquorum issues and pull requests

#23 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot about 1 year ago

#22 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#21 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#20 - Create test datasets for nf-core/fastquorum

Issue - State: open - Opened by nh13 almost 2 years ago
Labels: enhancement, help wanted

#19 - Consensus mapped BAM replacing initial mapped file

Issue - State: open - Opened by FerriolCalvet almost 2 years ago - 1 comment
Labels: bug

#18 - fix bug with strategy != 'Paired'

Pull Request - State: closed - Opened by brentp almost 2 years ago

#17 - Add support for more aligners

Issue - State: open - Opened by matthdsm almost 2 years ago - 4 comments
Labels: enhancement, good first issue

#16 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 4 comments

#15 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#14 - Add container for docker/singularity

Pull Request - State: closed - Opened by SPPearce almost 2 years ago - 3 comments

#13 - question about aq and bq

Issue - State: closed - Opened by brentp about 2 years ago - 1 comment

#12 - FastqToBam with a external UMIs fastq

Issue - State: open - Opened by migrau about 2 years ago - 2 comments
Labels: enhancement, good first issue

#11 - Third umi read

Pull Request - State: open - Opened by adamrtalbot about 2 years ago - 2 comments

#10 - looking for read_structure column in samplesheet?

Issue - State: closed - Opened by MikeHala about 2 years ago - 3 comments
Labels: question

#9 - ZipperBams tags to reverse

Issue - State: open - Opened by tobyaicher about 2 years ago - 1 comment
Labels: good first issue, help wanted, question

#8 - Bugfix/make it work local

Pull Request - State: closed - Opened by nh13 about 2 years ago

#7 - [bugfix] fix missing samtools conda requirement

Pull Request - State: closed - Opened by nh13 about 2 years ago

#6 - rename fgcons to fastquorum

Pull Request - State: closed - Opened by nh13 about 2 years ago

#5 - Fix missing code backtick in README

Pull Request - State: closed - Opened by nh13 about 2 years ago

#4 - Blocked requiring a release of samtools 1.16.1 for sorting in template-coordinate order

Issue - State: closed - Opened by nh13 about 2 years ago - 1 comment
Labels: enhancement

#3 - Implement high-throughput version of this pipeline

Issue - State: open - Opened by nh13 about 2 years ago
Labels: enhancement

#2 - Decide on an appropriate name for this pipeline

Issue - State: closed - Opened by nh13 about 2 years ago - 9 comments

#1 - What container to use that contains multiple tools

Issue - State: closed - Opened by nh13 about 2 years ago - 2 comments