Ecosyste.ms: Issues

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GitHub / nf-core/epitopeprediction issues and pull requests

#128 - Fix FASTA generation

Pull Request - State: closed - Opened by christopher-mohr over 2 years ago

#127 - Docs and changelog update

Pull Request - State: closed - Opened by christopher-mohr over 2 years ago - 1 comment

#126 - Fix AWS II

Pull Request - State: closed - Opened by ggabernet over 2 years ago

#125 - Fix AWS test

Pull Request - State: closed - Opened by ggabernet over 2 years ago

#124 - Release 2.0.0

Pull Request - State: closed - Opened by ggabernet over 2 years ago - 2 comments

#123 - Remove netmhcii specs and deactivate corresponding tests

Pull Request - State: closed - Opened by christopher-mohr over 2 years ago

#122 - Template update v2.2

Pull Request - State: closed - Opened by ggabernet over 2 years ago - 1 comment

#120 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago

#113 - Update pipeline to DSL2 and to most recent template

Pull Request - State: closed - Opened by christopher-mohr over 2 years ago

#106 - Update the docs based on the changes

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 1 comment

#104 - new nfcore module of SNPSIFT_SPLIT

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago

#103 - Alter the tests so that a sample sheet can be used as input instead of one file

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 2 comments
Labels: enhancement

#102 - Implementation of the sample sheet in the pipeline

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 8 comments
Labels: enhancement

#101 - local module: mergeReports

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 1 comment

#100 - Template update for nf-core/tools v2.1

Issue - State: closed - Opened by christopher-mohr over 2 years ago - 1 comment
Labels: enhancement

#99 - proper inplementation of the current netmhc_tools_import process

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 4 comments
Labels: bug, enhancement, dsl2

#98 - nfcore module: cat (mergeFastas)

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 1 comment

#97 - nfcore module: csvtk_concat or cat (mergeResults)

Issue - State: open - Opened by marissaDubbelaar over 2 years ago

#96 - local module: peptidePrediction

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 2 comments
Labels: enhancement, dsl2, ready for incorporation

#95 - Local module: splitPeptides

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 2 comments
Labels: enhancement, dsl2, ready for incorporation

#94 - local module: genPeptides

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 2 comments
Labels: enhancement, dsl2, ready for incorporation

#93 - local module: csvtk_split and snpsift_split (splitVariants)

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 5 comments
Labels: enhancement, dsl2, ready for incorporation

#92 - local module: check_requested_models

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 2 comments
Labels: enhancement, dsl2, ready for incorporation

#91 - Create mulled container that can be used for the PEPTIDE_PREDICTION

Issue - State: closed - Opened by marissaDubbelaar over 2 years ago - 5 comments
Labels: enhancement, dsl2

#89 - Port workflow to DSL2

Issue - State: closed - Opened by christopher-mohr over 2 years ago - 1 comment
Labels: enhancement, dsl2

#88 - Important! Template update for nf-core/tools v2.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#87 - Important! Template update for nf-core/tools v2.0.1

Pull Request - State: closed - Opened by nf-core-bot about 3 years ago - 1 comment

#75 - Enable selection of Ensembl (BioMart) version

Issue - State: open - Opened by christopher-mohr over 3 years ago
Labels: enhancement

#54 - Add percentile rank scores

Issue - State: open - Opened by skrakau almost 4 years ago - 2 comments
Labels: enhancement