Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/epitopeprediction issues and pull requests
#230 - Release 2.3.0
Pull Request -
State: open - Opened by jonasscheid 6 months ago
- 1 comment
#229 - Prepare release 2.3.0
Pull Request -
State: closed - Opened by jonasscheid 6 months ago
- 2 comments
#228 - Merging template 2.12.1
Pull Request -
State: closed - Opened by jonasscheid 7 months ago
- 2 comments
#227 - Prevent crash if no transcript is found (in splitted vcf)
Pull Request -
State: closed - Opened by jonasscheid 7 months ago
- 1 comment
#226 - Important! Template update for nf-core/tools v2.12
Pull Request -
State: closed - Opened by nf-core-bot 7 months ago
#225 - updating README + show_supported_models fix
Pull Request -
State: open - Opened by thomas-davis 7 months ago
- 4 comments
#224 - show_supported_models module not called correctly
Issue -
State: open - Opened by jonasscheid 7 months ago
- 1 comment
Labels: bug, good first issue
#223 - Important! Template update for nf-core/tools v2.11.1
Pull Request -
State: closed - Opened by nf-core-bot 8 months ago
- 1 comment
#222 - Important! Template update for nf-core/tools v2.11
Pull Request -
State: closed - Opened by nf-core-bot 8 months ago
- 1 comment
#221 - Remove GSvar and variant tsv input types
Pull Request -
State: closed - Opened by jonasscheid 9 months ago
- 1 comment
#220 - Switch to nf-validation
Pull Request -
State: closed - Opened by jonasscheid 9 months ago
- 8 comments
#219 - Fix external tools import container
Pull Request -
State: closed - Opened by jonasscheid 10 months ago
- 2 comments
#218 - Fix external tools import container
Pull Request -
State: closed - Opened by jonasscheid 10 months ago
- 2 comments
#217 - Add syfpeithi module
Issue -
State: open - Opened by jonasscheid 10 months ago
Labels: enhancement
#216 - Add netmhc(ii)pan module
Issue -
State: open - Opened by jonasscheid 10 months ago
Labels: enhancement
#215 - Add mhcflurry module
Issue -
State: open - Opened by jonasscheid 10 months ago
Labels: enhancement
#214 - Add mhcnuggets module
Issue -
State: open - Opened by jonasscheid 10 months ago
Labels: enhancement
#213 - Update epytope and Ensembl reference handling
Pull Request -
State: closed - Opened by christopher-mohr 11 months ago
- 1 comment
Labels: enhancement
#212 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot 11 months ago
#211 - Allele data can also be used via internet link in sample sheet
Pull Request -
State: closed - Opened by alina-bauer 12 months ago
- 4 comments
#210 - New structure of mhc binding subworkflow
Pull Request -
State: closed - Opened by alina-bauer 12 months ago
- 1 comment
#209 - Check sample sheet uses Row Checker class
Pull Request -
State: closed - Opened by alina-bauer 12 months ago
- 2 comments
#208 - Ensemble archive GRCh38 is out of date (apr2018)
Issue -
State: open - Opened by tlitfin about 1 year ago
- 6 comments
Labels: bug
#207 - Rewrite and move check_requested_models in input_check subworkflow
Issue -
State: open - Opened by jonasscheid about 1 year ago
Labels: enhancement, question
#206 - Check sample sheet doesn't use RowChecker class
Issue -
State: open - Opened by jonasscheid about 1 year ago
Labels: enhancement
#205 - Update general structure of MHCbinding subworkflow
Issue -
State: open - Opened by alina-bauer about 1 year ago
Labels: enhancement
#203 - Merging template updates 2 9
Pull Request -
State: closed - Opened by christopher-mohr about 1 year ago
- 1 comment
#202 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
#201 - Proteome CLI flags of epaa and nextflow differ
Issue -
State: open - Opened by jonasscheid about 1 year ago
- 2 comments
Labels: bug
#200 - change to epytope 3.3.1 version and new multi container for peptide prediction
Pull Request -
State: closed - Opened by jonasscheid over 1 year ago
- 21 comments
#199 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#198 - Release 2.2.1 bugfix
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 1 comment
#197 - bump version to 2.2.1
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 1 comment
#196 - Fix external tools prediction
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 2 comments
#195 - Version 2.2.0 does not produce any predictions anymore for netmhcpan class 1
Issue -
State: closed - Opened by steffenlem over 1 year ago
- 3 comments
Labels: bug
#194 - Address review comments
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 3 comments
#193 - Use nf-core modules
Issue -
State: open - Opened by ggabernet over 1 year ago
Labels: enhancement
#192 - Bump versions 2.2.0
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 1 comment
#191 - Prepare release 2.2.0
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 4 comments
#189 - Merge template update
Pull Request -
State: closed - Opened by christopher-mohr over 1 year ago
- 3 comments
#188 - Important! Template update for nf-core/tools v2.7.2
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
#187 - Merge template 2.7.1
Pull Request -
State: closed - Opened by christopher-mohr over 1 year ago
- 1 comment
#186 - Logging to stdout and better errors
Pull Request -
State: closed - Opened by ggabernet over 1 year ago
- 1 comment
#185 - Important! Template update for nf-core/tools v2.7.1
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
#184 - Fix external tool version
Pull Request -
State: closed - Opened by christopher-mohr over 1 year ago
- 1 comment
#183 - Issue with the process: EXTERNAL_TOOLS_IMPORT
Issue -
State: closed - Opened by marissaDubbelaar over 1 year ago
- 3 comments
Labels: bug
#182 - Update GRCh38 biomart archive
Pull Request -
State: closed - Opened by christopher-mohr over 1 year ago
- 1 comment
#181 - Add Manta support for structural variant prediction
Issue -
State: open - Opened by jonasscheid almost 2 years ago
- 2 comments
Labels: enhancement
#180 - Add vep support
Pull Request -
State: closed - Opened by christopher-mohr almost 2 years ago
- 3 comments
#179 - Important! Template update for nf-core/tools v2.6
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
#178 - Update nf-core modules
Pull Request -
State: closed - Opened by christopher-mohr almost 2 years ago
- 1 comment
#177 - Merge template update 2.5.1
Pull Request -
State: closed - Opened by christopher-mohr almost 2 years ago
- 2 comments
#176 - Important! Template update for nf-core/tools v2.5.1
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
#175 - Important! Template update for nf-core/tools v2.5
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 2 comments
#174 - Add rnaseq input
Pull Request -
State: open - Opened by christopher-mohr almost 2 years ago
- 2 comments
Labels: do not merge
#173 - bump version
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#172 - Add support for VEP annotated files
Issue -
State: closed - Opened by christopher-mohr about 2 years ago
Labels: enhancement
#171 - release 2.1.0
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#170 - Add general binder column
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#169 - Update modules
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 3 comments
#168 - Add functionality for prediction with multiple classes in one run
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#167 - Fix bug that results in empty prediction results
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#166 - Increment support of netmhc tools
Pull Request -
State: closed - Opened by jonasscheid about 2 years ago
- 1 comment
#165 - Add tools to full size test
Pull Request -
State: closed - Opened by ggabernet about 2 years ago
- 2 comments
#164 - Switch to epytope
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#163 - Add threshold to report
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#162 - Update to epytope 3.1.0
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#161 - Add threshold function for rank and set affinity as optional
Pull Request -
State: closed - Opened by jonasscheid about 2 years ago
- 2 comments
#160 - Extend binding threshold with rank metric
Issue -
State: closed - Opened by jonasscheid about 2 years ago
Labels: enhancement
#159 - Fix execution for multiple samples of same input type
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 4 comments
#158 - update trigger for nonfree CI tests
Pull Request -
State: closed - Opened by ggabernet about 2 years ago
- 2 comments
#157 - add config for external prediction tools
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#156 - Add documentation
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
#155 - Add functionality for splitting input VCF files by variants
Pull Request -
State: closed - Opened by christopher-mohr about 2 years ago
- 1 comment
Labels: enhancement
#154 - Switch to epytope
Pull Request -
State: closed - Opened by jonasscheid about 2 years ago
- 1 comment
#153 - Important! Template update for nf-core/tools v2.4
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#152 - Template merge for last updates
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 2 comments
#151 - Important! Template update for nf-core/tools v2.3.2
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
#150 - Important! Template update for nf-core/tools v2.3.1
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#149 - More adaptations for eptyope
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 3 comments
#148 - Epytope switch in process peptide_prediction
Pull Request -
State: closed - Opened by jonasscheid over 2 years ago
- 2 comments
#147 - Important! Template update for nf-core/tools v2.3
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#146 - KeyError: 'Transcript ID'
Issue -
State: closed - Opened by marissaDubbelaar over 2 years ago
- 2 comments
Labels: bug, status: awaiting feedback
#145 - Support gzipped variant input
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 1 comment
#144 - Check FORMAT entries in VCF parser
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 1 comment
#143 - Splitting a zipped vcf.gz file
Issue -
State: closed - Opened by marissaDubbelaar over 2 years ago
Labels: bug
#142 - No attribute 'MIN_DP'
Issue -
State: closed - Opened by marissaDubbelaar over 2 years ago
- 1 comment
Labels: bug
#141 - Missing output information in neoepitopeprediction snvs and indels
Issue -
State: closed - Opened by jonasscheid over 2 years ago
- 2 comments
Labels: bug, status: awaiting feedback
#140 - Neoepitopeprediction is too memory demanding
Issue -
State: closed - Opened by jonasscheid over 2 years ago
- 1 comment
Labels: enhancement
#139 - Fix linting and samplesheet check
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 1 comment
#138 - Add lint config
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 2 comments
#137 - Fix markdown linting
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 1 comment
#136 - Neoepitopeprediction crashes when a variant has annotated metadata, which is not available for others
Issue -
State: closed - Opened by jonasscheid over 2 years ago
Labels: bug
#135 - Fix unique variant annotation field handling #136
Pull Request -
State: closed - Opened by jonasscheid over 2 years ago
- 3 comments
#134 - Add RNAseq table as input
Issue -
State: open - Opened by ggabernet over 2 years ago
- 1 comment
Labels: enhancement
#133 - Change result folder structure
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 4 comments
#132 - Bump version to 2.1.0dev
Pull Request -
State: closed - Opened by christopher-mohr over 2 years ago
- 2 comments
#131 - Reorganize result folder structure
Issue -
State: closed - Opened by christopher-mohr over 2 years ago
Labels: enhancement
#130 - Use Epytope instead of Fred2 once the release is available
Issue -
State: closed - Opened by ggabernet over 2 years ago
Labels: enhancement
#129 - remove fastqc module
Pull Request -
State: closed - Opened by ggabernet over 2 years ago