Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/demultiplex issues and pull requests
#152 - FEAT: update bclconvert to 4.2.4
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 3 comments
#151 - FEAT: update bclconvert to 4.2.4
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 2 comments
#150 - [Question]: Upgrading bcl-convert to 4.2.4
Issue -
State: open - Opened by tamuanand over 1 year ago
- 2 comments
#149 - Add samplesheet generation
Issue -
State: open - Opened by Emiller88 over 1 year ago
#148 - Use teams in CODEOWNERS
Pull Request -
State: closed - Opened by Emiller88 over 1 year ago
- 1 comment
#147 - Add Kraken2 step
Pull Request -
State: open - Opened by Aratz over 1 year ago
- 1 comment
#146 - Update the citation tools
Issue -
State: open - Opened by Emiller88 over 1 year ago
#145 - Fix MultiQC report generation
Pull Request -
State: closed - Opened by Aratz over 1 year ago
- 1 comment
#144 - MultiQC report is empty
Issue -
State: open - Opened by Aratz over 1 year ago
- 1 comment
Labels: bug
#143 - Add option to run CheckQC after demultiplexing with bcl2fastq
Issue -
State: open - Opened by matrulda over 1 year ago
- 2 comments
Labels: enhancement
#142 - Demux dies for empty files
Issue -
State: open - Opened by FelixKrueger over 1 year ago
Labels: bug
#141 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#140 - Make it possible to skip MultiQC
Pull Request -
State: closed - Opened by Aratz over 1 year ago
- 1 comment
#139 - Update samplesheet in usage
Issue -
State: open - Opened by Emiller88 over 1 year ago
#138 - Support different input schema's for different demultiplexers
Issue -
State: open - Opened by Emiller88 over 1 year ago
- 1 comment
Labels: enhancement
#137 - Wrong REGEX to exclude "Undetermined" fastq files
Issue -
State: closed - Opened by mblohmer over 1 year ago
Labels: bug
#135 - Fastq files missing from output / report, 10x single cell
Issue -
State: open - Opened by rifius over 1 year ago
- 2 comments
Labels: bug
#133 - Remove confusing language for sample sheets (related to Issue #98)
Pull Request -
State: open - Opened by AdrijaK over 1 year ago
- 3 comments
#132 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 1 comment
#131 - Bump b2fq tests
Pull Request -
State: open - Opened by Emiller88 over 1 year ago
- 1 comment
#130 - Remove_aws_ecr_public_profile
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#129 - Fix/ci nf tests & Remove un-necessary registry declarations
Pull Request -
State: closed - Opened by sateeshperi over 1 year ago
- 1 comment
Labels: Ready to review
#128 - Remove un-necessary registry declarations
Pull Request -
State: closed - Opened by maxulysse over 1 year ago
- 6 comments
#127 - Add singularity.registry = 'quay.io' and bump NF version to 23.04.0
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#126 - Dev -> Master for 1.3.2 release
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#125 - Move containers for pipeline to quay.io
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#124 - Dev -> Master for 1.3.1 patch release
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#123 - Move test data from pipeline to testdatasets
Pull Request -
State: closed - Opened by drpatelh over 1 year ago
- 1 comment
#122 - Use Nextflow.error instead of 'exit 1'
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 3 comments
#121 - Use github URL for Illumina format SampleSheet so -profile test works remotely
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 3 comments
#120 - Update docs for v1.3.0 release
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 2 comments
#119 - Re-add aws_tower config for running on Tower
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#118 - Release candidate 1.3.0
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 1 comment
#117 - Bump fastp
Pull Request -
State: closed - Opened by matthdsm over 1 year ago
- 4 comments
#116 - Ambiguous sampleSheet.csv structure
Issue -
State: open - Opened by Gian77 over 1 year ago
- 2 comments
Labels: bug
#115 - Update all modules and specify container registry using docker.registry default
Pull Request -
State: closed - Opened by adamrtalbot over 1 year ago
- 2 comments
#114 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot almost 2 years ago
- 2 comments
#113 - CHORES: Back to business as usual
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 1 comment
#112 - Release 1.2.0
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 2 comments
#111 - prepare release: 1.2.0
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 4 comments
#110 - groovify modules/local/csv2tsv.nf
Issue -
State: open - Opened by maxulysse almost 2 years ago
Labels: enhancement
#109 - RELEASE: 1.2.0
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 7 comments
#108 - FIX: Move untar to bclconvert and bcl2fastq processes
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 9 comments
#107 - FIX: update test_full with new test data for megatests
Pull Request -
State: closed - Opened by maxulysse almost 2 years ago
- 3 comments
#106 - Input file name collision occurs for fastp and falco
Issue -
State: open - Opened by kkami1115 almost 2 years ago
- 2 comments
Labels: bug
#105 - Regex does not parse sample names correctly
Issue -
State: closed - Opened by vitu1 almost 2 years ago
- 2 comments
Labels: bug
#104 - Fix/update nf tests
Pull Request -
State: closed - Opened by sateeshperi almost 2 years ago
- 1 comment
#103 - -profile test failing due to relative path in flowcell_input.csv
Issue -
State: open - Opened by jgbaum almost 2 years ago
- 1 comment
Labels: bug
#102 - Clean up samplesheet reading
Issue -
State: open - Opened by Emiller88 almost 2 years ago
Labels: enhancement
#101 - Bump bcl2fastq
Pull Request -
State: closed - Opened by Emiller88 almost 2 years ago
- 2 comments
#100 - Fqtk rebased
Pull Request -
State: closed - Opened by sam-white04 almost 2 years ago
- 2 comments
#99 - Add fqtk as a demultiplexer
Pull Request -
State: closed - Opened by sam-white04 almost 2 years ago
- 3 comments
#98 - Remove confusing samplesheet language
Issue -
State: open - Opened by Emiller88 almost 2 years ago
- 8 comments
Labels: bug
#97 - bcl2fastq installation error
Issue -
State: closed - Opened by ushnaahmad about 2 years ago
- 10 comments
Labels: bug
#96 - Fix dark image
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 2 comments
#95 - Codeowners
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 2 comments
#94 - Update supported sequencing platforms
Pull Request -
State: closed - Opened by nh13 about 2 years ago
- 1 comment
#93 - Update supported sequencing platforms
Pull Request -
State: closed - Opened by nh13 about 2 years ago
- 3 comments
#92 - bcl2fastq installation error
Issue -
State: closed - Opened by ushnaahmad about 2 years ago
- 3 comments
Labels: bug
#91 - Sgdemux dev
Pull Request -
State: closed - Opened by sam-white04 about 2 years ago
- 6 comments
#90 - Documentation and file type for SampleSheet.csv
Issue -
State: open - Opened by mschubert about 2 years ago
- 3 comments
Labels: enhancement
#89 - Logo on the readme is broken
Issue -
State: closed - Opened by Emiller88 about 2 years ago
Labels: bug
#88 - Add code-owners
Issue -
State: closed - Opened by Emiller88 about 2 years ago
Labels: enhancement
#87 - For sample demultiplexing from FASTQs, add fqtk.
Issue -
State: open - Opened by Emiller88 about 2 years ago
- 8 comments
Labels: enhancement
#86 - Dev -> Master for 1.1.0 release
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 2 comments
#85 - Prepare for 1.1.0 release
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 3 comments
#84 - skip_tools comment says list, schema says string
Issue -
State: open - Opened by Emiller88 about 2 years ago
Labels: bug
#83 - fixed if statements for skip_tools
Pull Request -
State: closed - Opened by glichtenstein about 2 years ago
- 2 comments
#82 - Optional fastp and falco skip statements seem to be incorrect
Issue -
State: closed - Opened by glichtenstein about 2 years ago
Labels: bug
#81 - What is the status of the test_full?
Issue -
State: open - Opened by maxulysse about 2 years ago
- 4 comments
Labels: enhancement
#80 - The process stop or cannot find correct file path when add NoLaneSplitting, true
Issue -
State: closed - Opened by wzheng0520 about 2 years ago
- 3 comments
Labels: bug
#79 - It looks like samplesheet.csv doesn't exist.
Issue -
State: closed - Opened by glichtenstein about 2 years ago
Labels: bug
#78 - Important! Template update for nf-core/tools v2.7.2
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
- 1 comment
#77 - Important! Template update for nf-core/tools v2.7.1
Pull Request -
State: closed - Opened by nf-core-bot about 2 years ago
- 1 comment
#76 - Highlight test files
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 1 comment
#75 - Feat/update input parsing
Pull Request -
State: closed - Opened by matthdsm about 2 years ago
- 6 comments
#74 - Test Groovy Functions
Issue -
State: open - Opened by Emiller88 about 2 years ago
- 2 comments
Labels: enhancement
#73 - nf-test init
Pull Request -
State: closed - Opened by Emiller88 about 2 years ago
- 2 comments
#72 - Migrate to nf-test
Issue -
State: closed - Opened by Emiller88 about 2 years ago
Labels: enhancement
#70 - Feat/wf qc options
Pull Request -
State: closed - Opened by matthdsm over 2 years ago
- 3 comments
#69 - Make running `falco` optional
Issue -
State: closed - Opened by matthdsm over 2 years ago
Labels: enhancement
#68 - Make trimming optional
Issue -
State: closed - Opened by matthdsm over 2 years ago
Labels: enhancement
#67 - Enable instititutional configs
Pull Request -
State: closed - Opened by Emiller88 over 2 years ago
- 2 comments
#66 - add subway map
Pull Request -
State: closed - Opened by nvnieuwk over 2 years ago
- 2 comments
#65 - add subway map
Pull Request -
State: closed - Opened by nvnieuwk over 2 years ago
- 2 comments
#64 - MultiQC report is empty
Issue -
State: open - Opened by matthdsm over 2 years ago
- 4 comments
Labels: bug
#63 - Workflow updates
Pull Request -
State: closed - Opened by matthdsm over 2 years ago
- 2 comments
#62 - Replace `fastqc` with `falco`
Issue -
State: closed - Opened by matthdsm over 2 years ago
- 1 comment
Labels: enhancement
#61 - Dev -> Master for 1.0.0 release
Pull Request -
State: closed - Opened by Emiller88 over 2 years ago
- 1 comment
#60 - RFC: Convert to stand-alone subworkflow(s)
Issue -
State: open - Opened by matthdsm over 2 years ago
- 1 comment
Labels: enhancement
#59 - Add support for `WatchPath`
Issue -
State: open - Opened by matthdsm over 2 years ago
Labels: enhancement
#58 - Release prep
Pull Request -
State: closed - Opened by Emiller88 over 2 years ago
- 3 comments
#57 - Allow bases2fastq to handle trimming by default
Issue -
State: closed - Opened by Emiller88 over 2 years ago
Labels: enhancement
#56 - bases2fastq doesn't use generate_fastq_meta so fcid is null
Issue -
State: closed - Opened by Emiller88 over 2 years ago
- 2 comments
Labels: bug
#55 - Important! Template update for nf-core/tools v2.6
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 1 comment
#54 - Add output dir back to bases2fastq
Pull Request -
State: closed - Opened by Emiller88 over 2 years ago
- 1 comment
#53 - Create a bases2fastq MultiQC Module
Issue -
State: open - Opened by Emiller88 over 2 years ago
Labels: enhancement
#52 - Remove subworkflows/local/input_check.nf
Issue -
State: closed - Opened by Emiller88 over 2 years ago
- 2 comments
Labels: enhancement
#51 - Bases2fastq
Pull Request -
State: closed - Opened by Emiller88 over 2 years ago
- 1 comment
#50 - Important! Template update for nf-core/tools v2.5.1
Pull Request -
State: closed - Opened by nf-core-bot over 2 years ago
- 2 comments