nf-core/configs issues and pull requests

#584 - Singularity options at the Crick

Pull Request - State: open - Opened by ChristopherBarrington over 1 year ago

#583 - Update googlels.config - fix params.use_spot for preemptible

Pull Request - State: open - Opened by dougnukem over 1 year ago

#582 - imb config: improve docs

Pull Request - State: open - Opened by phue over 1 year ago

#581 - add create.config

Pull Request - State: open - Opened by ChristopherChristofi over 1 year ago

#580 - Add additional contact fields

Issue - State: open - Opened by Emiller88 over 1 year ago

#579 - add imb.config

Pull Request - State: closed - Opened by phue over 1 year ago

#578 - Update eva eager config

Pull Request - State: closed - Opened by TCLamnidis over 1 year ago

#577 - Add codeowners generation

Pull Request - State: closed - Opened by Emiller88 over 1 year ago - 2 comments

#576 - update module use for computerome.md

Issue - State: open - Opened by AdrijaK over 1 year ago - 1 comment

#575 - account for gpu jobs in sanger

Pull Request - State: closed - Opened by maxozo over 1 year ago - 10 comments

#574 - rnafusion hasta: update samtools_view_for arriba/starfusion to 6GB

Pull Request - State: closed - Opened by rannick over 1 year ago

#573 - Update cambridge.md

Pull Request - State: closed - Opened by EmelineFavreau over 1 year ago - 2 comments

#572 - Generate CODEOWNERS from university contacts

Issue - State: open - Opened by Emiller88 over 1 year ago - 1 comment

#571 - Update cambridge.config

Pull Request - State: closed - Opened by EmelineFavreau over 1 year ago - 1 comment

#570 - Add Pawsey Setonix HPC config

Pull Request - State: closed - Opened by georgiesamaha over 1 year ago - 1 comment

#569 - Configuration for site PDC at KTH

Pull Request - State: closed - Opened by pontus over 1 year ago

#568 - Add University of Dundee cluster config

Pull Request - State: closed - Opened by dsloanm-uodit over 1 year ago - 4 comments

#567 - Fix metaphlan process name in taxprofiler EVA config

Pull Request - State: closed - Opened by maxibor over 1 year ago - 1 comment

#566 - Update eddie.config add BAM_MARKDUPLICATES_PICARD

Pull Request - State: closed - Opened by ggrimes over 1 year ago

#565 - Update crg config

Pull Request - State: closed - Opened by JoseEspinosa over 1 year ago

#564 - Update README.md to fix a link

Pull Request - State: closed - Opened by daisymut over 1 year ago

#563 - [WIP] scratching of sabmi-iec config profile

Pull Request - State: open - Opened by Mxrcon over 1 year ago

#562 - Some changes regarding definition of software versions

Pull Request - State: closed - Opened by cruk-mi over 1 year ago

#561 - Adding the MRC LMS Jex cluster

Pull Request - State: open - Opened by A-N-Other over 1 year ago - 4 comments

#560 - Update hasta.config

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago - 1 comment

#559 - Incorrect overhead estimation vsc_kul_uhasselt

Pull Request - State: closed - Opened by Joon-Klaps over 1 year ago
Labels: bug

#558 - update hasta.config

Pull Request - State: closed - Opened by LilyAnderssonLee over 1 year ago - 2 comments

#557 - Update rnafusion resources for hasta institutional config

Pull Request - State: open - Opened by fevac over 1 year ago

#556 - Create methylseq.config

Pull Request - State: closed - Opened by ewels over 1 year ago

#555 - [WIP] Update sanger.config

Pull Request - State: open - Opened by DLBPointon over 1 year ago
Labels: DO NOT MERGE YET

#554 - Fix scw.config

Pull Request - State: closed - Opened by prototaxites over 1 year ago

#553 - Removed all SBC ShARC configs/docs and replaced with TUoS Stanage

Pull Request - State: closed - Opened by lquayle88 over 1 year ago

#552 - Removed all SBC ShARC configs/docs and replaced with TUoS Stanage

Pull Request - State: closed - Opened by lquayle88 over 1 year ago - 5 comments

#551 - FEAT: Add software_license profile

Pull Request - State: closed - Opened by maxulysse over 1 year ago

#550 - WIP - Remove aws tower profile

Pull Request - State: open - Opened by maxulysse over 1 year ago

#549 - FEAT: Add aws_anonymous profile

Pull Request - State: open - Opened by maxulysse over 1 year ago - 2 comments

#548 - fix timeout issue and singularity cache misplacement (VSC_UGENT)

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago

#547 - Ethz euler

Pull Request - State: closed - Opened by jpadesousa over 1 year ago

#546 - fix libraryDir in unc_lccc config

Pull Request - State: closed - Opened by dmarron over 1 year ago

#545 - Documentation update for the OIST configuration

Pull Request - State: open - Opened by charles-plessy over 1 year ago - 1 comment

#544 - Update resources usage for rnafusion hasta config

Pull Request - State: closed - Opened by fevac over 1 year ago - 1 comment

#543 - replace blockquotes with admonitions in template

Pull Request - State: closed - Opened by mashehu over 1 year ago

#542 - Add unc lccc instituational profile

Pull Request - State: closed - Opened by dmarron over 1 year ago - 5 comments

#541 - Remove prince config

Pull Request - State: open - Opened by genericdata over 1 year ago

#540 - we need the software to be added to the sanger profile

Pull Request - State: closed - Opened by maxozo over 1 year ago

#539 - EVA: Fix iGenomes path

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 2 comments

#538 - Updated queue names in medair.config

Pull Request - State: closed - Opened by sima-r over 1 year ago

#537 - Remove crukmi profile from sarek specific pipelines

Pull Request - State: closed - Opened by SPPearce over 1 year ago - 1 comment

#536 - add COH Apollo cluster

Pull Request - State: closed - Opened by drejom over 1 year ago

#535 - NCI Gadi HPC config

Pull Request - State: closed - Opened by georgiesamaha over 1 year ago - 3 comments

#534 - docs/eva.md: How to enable debug profile?

Issue - State: open - Opened by paulmenzel over 1 year ago - 1 comment

#533 - update institution profile for KU_SUND_DANGPU

Pull Request - State: closed - Opened by AdrijaK over 1 year ago - 1 comment

#532 - fix typo vsc_kul_uhasselt.config

Pull Request - State: closed - Opened by Joon-Klaps over 1 year ago

#531 - Support newer nf-validation with new name for ignored params

Pull Request - State: closed - Opened by pontus over 1 year ago

#530 - Fix typo in pawsey_nimbus.md

Pull Request - State: closed - Opened by georgiesamaha over 1 year ago

#529 - Create CODEOWNERS file

Pull Request - State: closed - Opened by Pandapip1 over 1 year ago - 3 comments

#528 - Add WUSTL HTCF configuration

Pull Request - State: closed - Opened by Pandapip1 over 1 year ago - 9 comments

#527 - Typo in fub_curta.md

Pull Request - State: closed - Opened by wassimsalam01 over 1 year ago

#526 - [WIP] Add FUB HPC (Curta) config

Pull Request - State: closed - Opened by wassimsalam01 over 1 year ago - 10 comments

#525 - Update cluster specification vsc_kul_uhasselt

Pull Request - State: closed - Opened by Joon-Klaps over 1 year ago - 7 comments
Labels: bug

#524 - Bug fix in vsc ugent

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#523 - Update sanger.config

Pull Request - State: closed - Opened by priyanka-surana over 1 year ago
Labels: WIP

#522 - Add tier 1 clusters for VSC UGent

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 4 comments

#521 - Consolidated processes that require extra Java memory overhead, added…

Pull Request - State: closed - Opened by ameynert over 1 year ago

#520 - Update docs to explicitly request review

Pull Request - State: closed - Opened by jfy133 over 1 year ago

#519 - Ebi

Pull Request - State: closed - Opened by saulpierotti-ebi over 1 year ago - 8 comments

#518 - CRUKMI config update

Pull Request - State: closed - Opened by SPPearce over 1 year ago

#517 - Update CRUKMI config

Pull Request - State: closed - Opened by SPPearce over 1 year ago

#516 - Create incliva.config

Pull Request - State: closed - Opened by nevinwu over 1 year ago

#515 - Create new incliva profile

Pull Request - State: closed - Opened by nevinwu over 1 year ago

#514 - Fix taxprofiler @ eva openBLAS issues

Pull Request - State: closed - Opened by jfy133 over 1 year ago

#513 - Adding Hypatia config

Pull Request - State: closed - Opened by lusacristan over 1 year ago - 1 comment

#512 - Update sanger.config

Pull Request - State: closed - Opened by DLBPointon over 1 year ago - 3 comments
Labels: enhancement, WIP

#511 - Sanger.config update for small and week

Issue - State: closed - Opened by DLBPointon over 1 year ago
Labels: enhancement

#510 - Updating VSC_KUL_UHASSELT config for overhead

Pull Request - State: closed - Opened by Joon-Klaps over 1 year ago
Labels: bug, enhancement

#509 - [WIP] Yale McCleary config

Pull Request - State: open - Opened by rhagenson over 1 year ago - 4 comments

#508 - Update max time to adhere to standard nf-core validation - VSC UGent

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#507 - Re-add cpu/memory specifications to MAG @ EVA

Pull Request - State: closed - Opened by jfy133 over 1 year ago - 1 comment

#506 - added atoplex kit on genomes.config

Pull Request - State: closed - Opened by ctuni over 1 year ago - 2 comments

#505 - Update crick.config to a new igenomes cluster path

Pull Request - State: closed - Opened by chris-cheshire over 1 year ago

#504 - Missing bracket for MAG @ EVA

Pull Request - State: closed - Opened by jfy133 almost 2 years ago

#503 - Update MAG @ EVA to add more exit codes and remove time limits

Pull Request - State: closed - Opened by jfy133 almost 2 years ago - 1 comment

#502 - Update imperial.config

Pull Request - State: closed - Opened by teemuronkko almost 2 years ago

#501 - Update imperial.config

Pull Request - State: closed - Opened by teemuronkko almost 2 years ago - 2 comments

#500 - Update pawsey_nimbus.md

Pull Request - State: closed - Opened by georgiesamaha almost 2 years ago - 5 comments

#499 - Update crg config for the proteinfold pipeline

Pull Request - State: closed - Opened by athbaltzis almost 2 years ago

#498 - leicester config improved

Pull Request - State: closed - Opened by maxozo almost 2 years ago - 6 comments

#497 - update max_memory and max_time

Pull Request - State: closed - Opened by d4straub almost 2 years ago

#496 - fixes for the website

Pull Request - State: closed - Opened by mashehu almost 2 years ago - 1 comment

#495 - add rcac config

Pull Request - State: open - Opened by zhan4429 almost 2 years ago

#494 - add rcac config

Pull Request - State: closed - Opened by zhan4429 almost 2 years ago

#493 - align name of markdown file to config file name

Pull Request - State: closed - Opened by mashehu almost 2 years ago

#492 - Remove scratch from VSC UGent config

Pull Request - State: closed - Opened by nvnieuwk almost 2 years ago

#491 - Update GenOuest config

Pull Request - State: closed - Opened by abretaud almost 2 years ago - 2 comments

#490 - add picard markduplicate fixes

Pull Request - State: closed - Opened by rannick almost 2 years ago - 1 comment

#489 - Ucd sonic

Pull Request - State: closed - Opened by brucemoran almost 2 years ago - 2 comments

#488 - added pawsey_nimbus

Pull Request - State: closed - Opened by georgiesamaha almost 2 years ago - 1 comment

#487 - Add `tubingen_apg` profile

Pull Request - State: closed - Opened by TCLamnidis almost 2 years ago - 1 comment

#486 - Added uw_hyak_pedslabs config

Pull Request - State: closed - Opened by CarsonJM almost 2 years ago - 2 comments

#485 - Update the profile to match the BIowulf cluster setting

Pull Request - State: closed - Opened by qiyubio almost 2 years ago - 13 comments

GitHub / nf-core/configs issues and pull requests