Ecosyste.ms: Issues

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GitHub / nf-core/circdna issues and pull requests

#61 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot about 1 year ago

#60 - ERROR ~ Argument of `file` function cannot be null

Issue - State: closed - Opened by tjbencomo over 1 year ago - 3 comments
Labels: bug

#59 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#56 - Pipeline Relase Version 1.0.4

Pull Request - State: open - Opened by DSchreyer over 1 year ago - 1 comment

#55 - Minor fixes for GitHub Action workflow to build + push Docker image

Pull Request - State: closed - Opened by ewels over 1 year ago - 3 comments

#54 - Circexplorer2 Annotate

Issue - State: open - Opened by uretaj over 1 year ago - 1 comment
Labels: enhancement

#53 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 2 comments

#52 - AmpliconArchitect should use AmpliconSuite-pipeline as mode of entry

Issue - State: open - Opened by jluebeck over 1 year ago - 7 comments
Labels: enhancement

#50 - AmpliconArchitect related paths must be absolute not relative

Issue - State: closed - Opened by SPPearce over 1 year ago - 2 comments
Labels: bug

#49 - Make bam marking duplicates optional when bams are provided

Issue - State: closed - Opened by SPPearce over 1 year ago - 1 comment
Labels: enhancement

#48 - Update CITATIONS.md

Pull Request - State: closed - Opened by jluebeck over 1 year ago - 1 comment

#47 - No validation of --input_format

Issue - State: closed - Opened by lasseringstedmark over 1 year ago - 2 comments
Labels: bug

#46 - nf-core/circdna update to v1.0.2

Pull Request - State: closed - Opened by DSchreyer over 1 year ago - 2 comments

#45 - genome.fa: No such file or directory

Issue - State: closed - Opened by ShixiangWang over 1 year ago - 4 comments
Labels: bug

#44 - bwa index not working

Issue - State: closed - Opened by ShixiangWang over 1 year ago - 3 comments
Labels: bug

#43 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago

#42 - reference_build parameter doesn't accept 'mm10' as input

Issue - State: closed - Opened by ipstone almost 2 years ago - 3 comments
Labels: bug

#41 - Access Denied for Amazon S3 download

Issue - State: closed - Opened by ipstone almost 2 years ago - 3 comments
Labels: bug

#40 - error in NFCORE_CIRCDNA:CIRCDNA:CUSTOM_DUMPSOFTWAREVERSIONS (1)

Issue - State: closed - Opened by ipstone almost 2 years ago - 2 comments

#39 - CNVKIT_BATCH fails

Issue - State: closed - Opened by paulemnah almost 2 years ago - 4 comments
Labels: bug

#38 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#37 - Error executing process > 'NFCORE_CIRCDNA:CIRCDNA:SAMTOOLS_SORT_QNAME_CF

Issue - State: closed - Opened by liu-zhiyang about 2 years ago - 4 comments
Labels: bug

#36 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#35 - Test run fails with singularity `-r 1.0.1`

Issue - State: closed - Opened by madagiurgiu25 about 2 years ago - 9 comments
Labels: bug

#34 - Latest default circdna version is 1.0.0 and not 1.0.1

Issue - State: closed - Opened by madagiurgiu25 about 2 years ago - 2 comments
Labels: bug

#33 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#32 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 2 comments

#31 - Version 1.0.1 - Minor Updates on documentation and bug fix of version

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#30 - Dev1.0.1 - Minor Updates on documentation and bug fix of version

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 2 comments

#29 - Bug in line 214 of the nextflow.config file

Issue - State: closed - Opened by daianna21 over 2 years ago - 3 comments
Labels: bug

#28 - Merge Dev to Master - nf-core/circdna Version 1.0

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 3 comments

#27 - External DEV to nf-core/circdna dev PR

Pull Request - State: closed - Opened by apeltzer over 2 years ago - 1 comment

#26 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#25 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#24 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#23 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#22 - Merge dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago

#21 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago

#20 - PSEUDO PR - DO NOT MERGE

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 3 comments

#19 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#18 - Template

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#17 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#16 - Nf core template

Pull Request - State: closed - Opened by DSchreyer over 2 years ago

#15 - Run Prettier linting

Pull Request - State: closed - Opened by ewels over 2 years ago - 2 comments

#14 - Template Merge

Pull Request - State: closed - Opened by DSchreyer over 2 years ago

#13 - Template update for nf-core/tools version 2.4.dev0

Pull Request - State: closed - Opened by ewels over 2 years ago

#12 - Merge DSchreyer:dev into dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 4 comments

#11 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#10 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 2 comments

#9 - Updates

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 3 comments

#8 - Update 2.3; Merge with DSchreyer/circdna dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 2 comments

#7 - Template update for nf-core/tools version 2.3

Pull Request - State: closed - Opened by DSchreyer over 2 years ago

#6 - Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 2 comments

#5 - Merge master from DSchreyer/circdna master

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 2 comments

#4 - Merge Main from DSchreyer/circdna master

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#3 - Merge Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#2 - Merge with Master fork

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment

#1 - Recent Update to circdna Dev

Pull Request - State: closed - Opened by DSchreyer over 2 years ago - 1 comment