nf-core/cageseq issues and pull requests

#72 - Important! Template update for nf-core/tools v2.10

Pull Request - State: open - Opened by nf-core-bot over 1 year ago

#71 - cageseq error

Issue - State: closed - Opened by gk1610 over 1 year ago - 12 comments
Labels: bug

#70 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#69 - Nf core template merge 2.8

Pull Request - State: closed - Opened by mirpedrol almost 2 years ago - 1 comment

#68 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#67 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#66 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#65 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#64 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#63 - error: make_ctss.sh: line 18: Read-only file system Read-only file system

Issue - State: open - Opened by aboyd003 almost 3 years ago - 1 comment
Labels: bug

#62 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#61 - Into causing error line 130 of main.nf

Issue - State: open - Opened by aboyd003 almost 3 years ago - 2 comments

#60 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#59 - Important! Template update for nf-core/tools v2.3.1

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#58 - Important! Template update for nf-core/tools v2.3

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 2 comments

#57 - 2.0.0 Release

Pull Request - State: open - Opened by mashehu about 3 years ago - 1 comment

#56 - update samtools/view

Pull Request - State: closed - Opened by mashehu about 3 years ago

#55 - update to new template, switch to nf-core modules

Pull Request - State: closed - Opened by mashehu about 3 years ago - 1 comment

#54 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot about 3 years ago

#53 - Important! Template update for nf-core/tools v2.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#52 - Important! Template update for nf-core/tools v2.0.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#51 - Important! Template update for nf-core/tools v2.0

Pull Request - State: closed - Opened by KevinMenden over 3 years ago - 1 comment

#50 - Release 2.0.0 PR

Pull Request - State: closed - Opened by KevinMenden almost 4 years ago - 8 comments

#49 - version bump and changelog

Pull Request - State: closed - Opened by KevinMenden almost 4 years ago - 2 comments

#48 - Important! Template update for nf-core/tools v1.14

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago - 3 comments

#47 - Merge DSL2 into dev branch

Pull Request - State: closed - Opened by KevinMenden almost 4 years ago - 2 comments

#46 - Remove social preview image to use GitHub OpenGraph

Pull Request - State: closed - Opened by maxulysse almost 4 years ago

#45 - Important! Template update for nf-core/tools v1.13.3

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago - 2 comments

#44 - Important! Template update for nf-core/tools v1.13.2

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago - 1 comment

#43 - Important! Template update for nf-core/tools v1.13.1

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago - 1 comment

#42 - Important! Template update for nf-core/tools v1.13

Pull Request - State: closed - Opened by nf-core-bot almost 4 years ago - 1 comment

#41 - updated date

Pull Request - State: closed - Opened by KevinMenden about 4 years ago

#40 - Release v1.0.2

Pull Request - State: closed - Opened by KevinMenden about 4 years ago - 1 comment

#39 - Bowtie alignment warning

Pull Request - State: closed - Opened by KevinMenden about 4 years ago

#38 - Added function for parameter validation

Pull Request - State: closed - Opened by KevinMenden about 4 years ago - 11 comments

#37 - fix `--input` and update multiqc config

Pull Request - State: closed - Opened by mashehu about 4 years ago

#36 - Merging template updates

Pull Request - State: closed - Opened by KevinMenden about 4 years ago

#35 - Important! Template update for nf-core/tools v1.12.1

Pull Request - State: closed - Opened by nf-core-bot about 4 years ago

#34 - Add alignment warnings for bowtie

Issue - State: closed - Opened by KevinMenden about 4 years ago
Labels: enhancement

#33 - replace remaining instances of `$baseDir`, update release date

Pull Request - State: closed - Opened by mashehu about 4 years ago

#32 - replace remaining instances of `$baseDir`, update release date

Pull Request - State: closed - Opened by mashehu about 4 years ago

#31 - Bug fix release - 1.0.1

Pull Request - State: closed - Opened by mashehu about 4 years ago

#30 - Version bump to 1.0.1

Pull Request - State: closed - Opened by mashehu about 4 years ago

#29 - Version bump to 1.0.1

Pull Request - State: closed - Opened by mashehu about 4 years ago

#28 - 1.0.1 bug fix release

Pull Request - State: closed - Opened by mashehu about 4 years ago

#27 - Merging template updates for nf-core tools 1.11+1.12 and bump version to 1.0.1

Pull Request - State: closed - Opened by mashehu about 4 years ago

#26 - Merging template updates for nf-core/tools 1.11+1.12

Pull Request - State: closed - Opened by mashehu about 4 years ago

#25 - First DSL2 version

Pull Request - State: closed - Opened by KevinMenden over 4 years ago - 5 comments

#24 - Important! Template update for nf-core/tools v1.12

Pull Request - State: closed - Opened by nf-core-bot over 4 years ago

#23 - add zenodo DOI

Pull Request - State: closed - Opened by mashehu over 4 years ago

#22 - 1.0.0 release 🎉

Pull Request - State: closed - Opened by mashehu over 4 years ago - 1 comment

#21 - update changelog for release

Pull Request - State: closed - Opened by mashehu over 4 years ago

#20 - add changes requested by reviewer

Pull Request - State: closed - Opened by mashehu over 4 years ago

#19 - Where are the versions numbers stored?

Issue - State: closed - Opened by aboyd003 over 4 years ago - 1 comment

#18 - apply changes according to the comments from first review

Pull Request - State: closed - Opened by mashehu over 4 years ago

#17 - Pseudo-PR for first pipeline release

Pull Request - State: closed - Opened by drpatelh over 4 years ago - 1 comment

#16 - bump version to 1.0.0

Pull Request - State: closed - Opened by mashehu over 4 years ago

#15 - Finish docs

Pull Request - State: closed - Opened by mashehu over 4 years ago - 4 comments

#14 - Add sortmerna rRNA filtering and fix several filtering bug fixes

Pull Request - State: closed - Opened by mashehu over 4 years ago

#13 - Merging template updates

Pull Request - State: closed - Opened by mashehu over 4 years ago

#12 - Important! Template update for nf-core/tools v1.10.2

Pull Request - State: closed - Opened by nf-core-bot over 4 years ago

#11 - getting everything ready for first release

Pull Request - State: closed - Opened by mashehu over 4 years ago

#10 - release first version

Issue - State: closed - Opened by mashehu over 4 years ago

#9 - Update deps

Pull Request - State: closed - Opened by mashehu over 4 years ago

#8 - apply template sync and first completion of pipeline

Pull Request - State: closed - Opened by mashehu almost 5 years ago - 4 comments

#7 - Important! Template update for nf-core/tools v1.9

Pull Request - State: closed - Opened by nf-core-bot almost 5 years ago

#6 - Add social preview image

Pull Request - State: closed - Opened by maxulysse about 5 years ago

#5 - Fix tests, switch to github actions, improve software version scraper

Pull Request - State: closed - Opened by mashehu about 5 years ago - 12 comments

#4 - Add social preview image

Pull Request - State: closed - Opened by maxulysse about 5 years ago

#3 - Missing branch: dev and TEMPLATE

Issue - State: closed - Opened by maxulysse about 5 years ago

#2 - Fix test

Pull Request - State: closed - Opened by mashehu about 5 years ago

#1 - Pulling updates from @KevinMenden

Pull Request - State: closed - Opened by mashehu about 5 years ago - 1 comment

GitHub / nf-core/cageseq issues and pull requests