Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nf-core/bamtofastq issues and pull requests
#69 - Network unreachable nodes
Issue -
State: closed - Opened by nmendozam 12 months ago
- 2 comments
Labels: bug
#68 - tweak usage.md
Pull Request -
State: closed - Opened by allaway 12 months ago
- 5 comments
#67 - Including blank "index" column causes workflow to stall
Issue -
State: open - Opened by allaway 12 months ago
Labels: bug
#66 - CHORES: Prepare Release 2.1.0
Pull Request -
State: closed - Opened by maxulysse 12 months ago
- 1 comment
#65 - Candidate Release 2.1.0
Pull Request -
State: closed - Opened by maxulysse 12 months ago
- 2 comments
#64 - Important! Template update for nf-core/tools v2.10
Pull Request -
State: closed - Opened by nf-core-bot about 1 year ago
- 2 comments
#63 - Deploy nf-validation plugin
Pull Request -
State: closed - Opened by SusiJo about 1 year ago
- 1 comment
#62 - Fix subway map
Pull Request -
State: closed - Opened by SusiJo about 1 year ago
- 1 comment
#61 - Important! Template update for nf-core/tools v2.9
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
- 2 comments
#60 - Fix subway map for dark mode
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 2 comments
#59 - Post-release version bump
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 1 comment
#58 - Apply formatting changes from code review
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 3 comments
#57 - Add new zenodo doi
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#56 - Add Dependencies in changelog
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#55 - Code review & formatting
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 1 comment
#54 - Apply code review suggestions
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#53 - Code review from Pseudo PR
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#52 - Code review
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#51 - Pseudo PR - Do not merge!
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 6 comments
#50 - First nf-core release & conversion to DSL2
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 2 comments
#49 - Get release ready
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#48 - Add igenomes
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#47 - Merging template updates2.8
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
#46 - Important! Template update for nf-core/tools v2.8
Pull Request -
State: closed - Opened by nf-core-bot over 1 year ago
#45 - Add test yml files
Pull Request -
State: closed - Opened by SusiJo over 1 year ago
- 5 comments
#44 - Dsl2
Pull Request -
State: closed - Opened by FriederikeHanssen over 1 year ago
#43 - Porting pipeline to DSL2
Pull Request -
State: closed - Opened by SusiJo almost 2 years ago
- 3 comments
#42 - Porting to DSL2
Pull Request -
State: closed - Opened by ggabernet almost 2 years ago
- 2 comments
#41 - MultiQC error with `test` profile about missing `multiqc_plots`
Issue -
State: closed - Opened by BrunoGrandePhD over 2 years ago
- 11 comments
#40 - Release 1.2.0
Pull Request -
State: closed - Opened by FriederikeHanssen over 2 years ago
- 1 comment
#39 - Prepare release
Pull Request -
State: closed - Opened by FriederikeHanssen over 2 years ago
- 2 comments
#38 - Use published CRAM test data
Pull Request -
State: closed - Opened by BrunoGrandePhD almost 3 years ago
#37 - Publish CRAM test data
Pull Request -
State: closed - Opened by BrunoGrandePhD almost 3 years ago
- 2 comments
#36 - Add support for CRAM files
Pull Request -
State: closed - Opened by BrunoGrandePhD almost 3 years ago
- 8 comments
#35 - Replace pigz?
Issue -
State: open - Opened by FriederikeHanssen about 3 years ago
#34 - added new flags to summary and enabled fast compression
Pull Request -
State: closed - Opened by SusiJo over 3 years ago
- 2 comments
#33 - added new flag --reads_in_memory
Pull Request -
State: closed - Opened by SusiJo over 3 years ago
- 1 comment
#32 - added samtools_collate_fast and changed cat command
Pull Request -
State: closed - Opened by SusiJo over 3 years ago
#31 - speed improvements
Pull Request -
State: closed - Opened by ggabernet over 3 years ago
#30 - Add Susanne (&run tests)
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#29 - Add contributor
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#28 - release 1.1.0
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
- 1 comment
#27 - Prepare release
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#26 - Use fromFilePairs to ensure proper pairing
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#25 - nonsense test
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#24 - Fix docker build badge
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
#23 - Stats & some other minor changes
Pull Request -
State: closed - Opened by FriederikeHanssen over 3 years ago
- 3 comments
#22 - Edge case: less than 1000 reads
Issue -
State: open - Opened by FriederikeHanssen over 3 years ago
#21 - Allow index files to be provided
Pull Request -
State: closed - Opened by SusiJo over 3 years ago
- 3 comments
#20 - Allow index files as input
Issue -
State: closed - Opened by SusiJo over 3 years ago
- 2 comments
#19 - Correct Doc: --bam should be --input
Issue -
State: closed - Opened by FriederikeHanssen almost 4 years ago
- 1 comment
Labels: good first issue
#18 - Use seqkit?
Issue -
State: open - Opened by FriederikeHanssen about 4 years ago
#17 - Post release version bump
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
#16 - Release 1.0.0
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
#15 - First Release
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 2 comments
#14 - Release 1.0
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
#13 - Fix README, GHA, remove nf-core in the last places
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
#12 - remove citation and fix dockerfile
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 1 comment
#11 - Add GithubAction workflows for Linting and running the test profiles
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 3 comments
#10 - Add baseDir to testdata paths and update container path
Pull Request -
State: closed - Opened by matrulda about 4 years ago
#9 - Allow CRAM as input format
Issue -
State: closed - Opened by FriederikeHanssen about 4 years ago
#8 - Update template to 1.10
Issue -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 1 comment
#7 - DSL2
Issue -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 1 comment
#6 - Small fixes to docs
Pull Request -
State: closed - Opened by matrulda about 4 years ago
- 3 comments
#5 - Store files needed for reporting
Issue -
State: open - Opened by FriederikeHanssen about 4 years ago
- 1 comment
Labels: enhancement
#4 - Documentation and things
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 9 comments
#3 - Removing iGenomes
Pull Request -
State: closed - Opened by matrulda about 4 years ago
#2 - Replace nf-core in header image with qbic
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
#1 - Adding things to make this release ready
Pull Request -
State: closed - Opened by FriederikeHanssen about 4 years ago
- 2 comments