nf-core/bactmap issues and pull requests

#72 - Important! Template update for nf-core/tools v2.14.1

Pull Request - State: open - Opened by nf-core-bot 6 months ago

#71 - Important! Template update for nf-core/tools v2.14.0

Pull Request - State: closed - Opened by nf-core-bot 7 months ago - 1 comment

#70 - Important! Template update for nf-core/tools v2.13.1

Pull Request - State: closed - Opened by nf-core-bot 9 months ago - 1 comment

#69 - Important! Template update for nf-core/tools v2.13

Pull Request - State: closed - Opened by nf-core-bot 9 months ago - 1 comment

#68 - Important! Template update for nf-core/tools v2.12

Pull Request - State: closed - Opened by nf-core-bot 10 months ago - 1 comment

#67 - Important! Template update for nf-core/tools v2.11.1

Pull Request - State: closed - Opened by nf-core-bot 11 months ago - 1 comment

#66 - Important! Template update for nf-core/tools v2.11

Pull Request - State: closed - Opened by nf-core-bot 11 months ago - 1 comment

#65 - Important! Template update for nf-core/tools v2.10

Pull Request - State: closed - Opened by nf-core-bot about 1 year ago - 1 comment

#64 - Important! Template update for nf-core/tools v2.9

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#63 - Important! Template update for nf-core/tools v2.8

Pull Request - State: closed - Opened by nf-core-bot over 1 year ago - 1 comment

#62 - Run MULTIQC process only if trimming enabled

Pull Request - State: closed - Opened by adamd3 over 1 year ago

#61 - Important! Template update for nf-core/tools v2.7.2

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#60 - calculation of snps to exclude LowQual positions

Issue - State: open - Opened by jennahamlin almost 2 years ago
Labels: enhancement

#59 - Important! Template update for nf-core/tools v2.7.1

Pull Request - State: closed - Opened by nf-core-bot almost 2 years ago - 1 comment

#58 - Important! Template update for nf-core/tools v2.6

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#57 - Important! Template update for nf-core/tools v2.5.1

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#56 - Important! Template update for nf-core/tools v2.5

Pull Request - State: closed - Opened by nf-core-bot about 2 years ago - 1 comment

#55 - pipeline fails when parameter trim = false

Issue - State: open - Opened by craigwindell over 2 years ago - 2 comments
Labels: bug

#54 - Important! Template update for nf-core/tools v2.4

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#53 - Cannot get property 'args' on null object error

Issue - State: open - Opened by creamerk over 2 years ago - 2 comments
Labels: bug

#52 - Important! Template update for nf-core/tools v2.3.2

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#51 - Important! Template update for nf-core/tools v2.3.1

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 1 comment

#50 - Important! Template update for nf-core/tools v2.3

Pull Request - State: closed - Opened by nf-core-bot over 2 years ago - 2 comments

#49 - Memory error

Issue - State: closed - Opened by MostafaYA almost 3 years ago - 8 comments

#48 - Important! Template update for nf-core/tools v2.2

Pull Request - State: closed - Opened by nf-core-bot almost 3 years ago - 1 comment

#47 - Important! Template update for nf-core/tools v2.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#46 - Important! Template update for nf-core/tools v2.0.1

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#45 - Important! Template update for nf-core/tools v2.0

Pull Request - State: closed - Opened by KevinMenden over 3 years ago - 1 comment

#44 - Option to downsample before fastp

Issue - State: open - Opened by antunderwood over 3 years ago
Labels: enhancement

#43 - option to keep the trimmed reads

Issue - State: open - Opened by antunderwood over 3 years ago
Labels: enhancement

#42 - download reads from the SRA/ENA

Issue - State: open - Opened by antunderwood over 3 years ago
Labels: enhancement

#41 - v1.0.0

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 2 comments

#40 - Preparing for release

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 1 comment

#39 - Fixes

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 3 comments

#38 - Pre-release fixes and syncing with latest DSL2 pipeline template

Pull Request - State: closed - Opened by drpatelh over 3 years ago - 1 comment

#37 - Dsl2

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 1 comment

#36 - Important! Template update for nf-core/tools v1.14

Pull Request - State: closed - Opened by nf-core-bot over 3 years ago - 1 comment

#35 - Update multiqc file names

Pull Request - State: closed - Opened by antunderwood over 3 years ago

#34 - Dsl2

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 3 comments

#33 - Add multiqc to pipeline

Pull Request - State: closed - Opened by avantonder over 3 years ago - 2 comments

#32 - remove argument from snp-sites

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 2 comments

#31 - Dsl2

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 2 comments

#30 - remove test data and add process labels

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 1 comment

#29 - Pseudo PR - DO NOT MERGE

Pull Request - State: closed - Opened by drpatelh over 3 years ago - 6 comments

#28 - Add documentation

Issue - State: closed - Opened by antunderwood over 3 years ago

#27 - Dsl2

Pull Request - State: closed - Opened by antunderwood over 3 years ago - 4 comments

#26 - Incorporate nf-core modules into bactmap

Issue - State: closed - Opened by antunderwood over 3 years ago

#25 - dsl2 sub sampling workflow

Pull Request - State: closed - Opened by thanhleviet over 3 years ago

#24 - improved mash

Pull Request - State: closed - Opened by thanhleviet over 3 years ago

#23 - Created phylogenies subworkflow already including FastTree which can …

Pull Request - State: closed - Opened by alexandregilardet over 3 years ago

#22 - Add pseudogenome count check before running gubbins

Issue - State: closed - Opened by antunderwood over 3 years ago

#21 - Test singularity

Issue - State: open - Opened by antunderwood over 3 years ago

#20 - Test docker

Issue - State: open - Opened by antunderwood over 3 years ago

#19 - add rasusa local module

Pull Request - State: closed - Opened by thanhleviet over 3 years ago

#18 - added subworkflow for variant calling with bcftools/mpileup and call…

Pull Request - State: closed - Opened by alexandregilardet over 3 years ago

#17 - rasusa DSL2 module

Issue - State: closed - Opened by thanhleviet over 3 years ago - 1 comment