Ecosyste.ms: Issues

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GitHub / nextstrain/fauna issues and pull requests

#85 - Declare dependencies with version ranges rather than single versions

Pull Request - State: closed - Opened by tsibley over 6 years ago - 1 comment

#84 - updated parser calls

Pull Request - State: closed - Opened by rneher almost 7 years ago - 1 comment

#83 - argument parser in upload.py

Issue - State: open - Opened by rneher almost 7 years ago - 3 comments

#82 - VIDRL TDB

Pull Request - State: closed - Opened by trvrb about 7 years ago - 1 comment

#81 - fauna uploads fail in python 3 unicode error

Issue - State: open - Opened by lmoncla about 7 years ago - 1 comment

#80 - Download multiple flu segments

Pull Request - State: closed - Opened by trvrb about 7 years ago

#79 - Include measles build

Pull Request - State: closed - Opened by trvrb over 7 years ago

#78 - Update and streamline mumps build

Pull Request - State: closed - Opened by trvrb over 7 years ago - 7 comments

#77 - Add script to concatenate all titers to one file tracking source/passage

Pull Request - State: closed - Opened by barneypotter24 over 7 years ago - 3 comments

#76 - Annotate titer TSVs with source and passage

Issue - State: closed - Opened by huddlej over 7 years ago

#74 - Piglets

Pull Request - State: closed - Opened by jameshadfield over 7 years ago

#73 - chateau submodule error

Issue - State: closed - Opened by jameshadfield over 7 years ago - 2 comments
Labels: bug

#72 - implement caching for geo lookups

Issue - State: open - Opened by jameshadfield over 7 years ago - 1 comment

#71 - Higher resolution sampling date available for Zika strain HN16

Issue - State: closed - Opened by alliblk over 7 years ago - 1 comment

#69 - Fix dengue author info

Issue - State: closed - Opened by trvrb over 7 years ago - 1 comment

#68 - unravel strain_to_doc calculation

Pull Request - State: closed - Opened by rneher over 7 years ago - 2 comments

#67 - update script adds journal & paper URL to sequences table

Pull Request - State: closed - Opened by jameshadfield over 7 years ago - 1 comment

#66 - Do not require subtype or define a default value

Pull Request - State: closed - Opened by huddlej over 7 years ago

#65 - Update download_all to work with segments

Issue - State: open - Opened by trvrb over 7 years ago - 2 comments

#64 - Sort out what we want to use for geo regions

Issue - State: closed - Opened by trvrb over 7 years ago - 4 comments

#63 - Removed references to deprecated copy_data and augur_path parameters.

Pull Request - State: closed - Opened by huddlej over 7 years ago - 1 comment

#62 - Counts in HI strain files need to be properly summed

Issue - State: closed - Opened by trvrb almost 8 years ago

#61 - Update regions

Pull Request - State: closed - Opened by sidneymbell almost 8 years ago - 1 comment

#60 - error with npm run chateau

Issue - State: closed - Opened by j3tkd almost 8 years ago - 3 comments

#59 - database dump

Issue - State: closed - Opened by phiweger almost 8 years ago - 3 comments

#58 - Add command line arguments to `download_all.py`

Issue - State: closed - Opened by barneypotter24 almost 8 years ago

#57 - Remove fuzzy matching on vdb upload

Issue - State: closed - Opened by trvrb about 8 years ago - 1 comment

#56 - Docs update

Pull Request - State: closed - Opened by barneypotter24 about 8 years ago

#50 - Allow uploads of non-HI assay types.

Issue - State: open - Opened by barneypotter24 about 8 years ago - 3 comments

#48 - Sort out why Texas/50 is being dropped

Issue - State: open - Opened by trvrb about 8 years ago - 1 comment

#44 - Retrieve GI numbers in batches of 2500 accessions.

Pull Request - State: closed - Opened by sidneymbell about 8 years ago - 2 comments

#33 - Pull genbank files with Accession numbers

Issue - State: open - Opened by chacalle over 8 years ago - 12 comments