nextomics/nextpolish issues and pull requests

#42 - Some confusion about the seq_split and the paried fasta file

Issue - State: closed - Opened by AntetokounmJie over 4 years ago - 2 comments

#41 - Two bugs for Nextpolish v1.2.4

Issue - State: closed - Opened by cassytha over 4 years ago

#40 - qustion about the times of iteration using long reads for consensus?

Issue - State: closed - Opened by longzhangnation over 4 years ago - 1 comment

#39 - make error

Issue - State: closed - Opened by ShenChen-bioUtopia over 4 years ago - 3 comments

#38 - Has the bug fixed ?

Issue - State: closed - Opened by longzhangnation over 4 years ago - 2 comments

#37 - will it be OK to use HIFI reads to consensus the genome ?

Issue - State: closed - Opened by longzhangnation over 4 years ago - 2 comments

#36 - PBS

Issue - State: closed - Opened by JJiTT over 4 years ago - 3 comments

#35 - About running time

Issue - State: closed - Opened by awesomedeer over 4 years ago - 3 comments

#34 - Maybe a small bug?

Issue - State: closed - Opened by awesomedeer over 4 years ago - 1 comment

#33 - error when run test data

Issue - State: closed - Opened by binlu1981 over 4 years ago - 11 comments

#32 - compile error in ubuntu 18

Issue - State: closed - Opened by binlu1981 over 4 years ago - 4 comments

#31 - nextpolish1.py generate the sequence with wrong id

Issue - State: closed - Opened by AntetokounmJie over 4 years ago - 2 comments

#30 - I think there is some bug within nextpolish2.py

Issue - State: closed - Opened by AntetokounmJie over 4 years ago - 4 comments

#29 - Question about -debug output

Issue - State: open - Opened by J-Wall over 4 years ago - 1 comment

#28 - Getting error when running lib/nextpolish1.py using python3

Issue - State: closed - Opened by J-Wall over 4 years ago - 2 comments

#27 - I got a simple question to ask :)

Issue - State: closed - Opened by AntetokounmJie over 4 years ago - 4 comments

#26 - NextPolish was core dumped in ‘01.lgs_polish/05.polish.ref.sh.work’

Issue - State: closed - Opened by jinhao94 over 4 years ago - 5 comments

#25 - nextPolish: command not found...

Issue - State: closed - Opened by yanzhongsino over 4 years ago - 1 comment

#24 - BUG for task=best

Issue - State: closed - Opened by zhk2017 over 4 years ago - 2 comments

#23 - Question on NextPolish output

Issue - State: closed - Opened by Ural-Yunusbaev over 4 years ago - 3 comments

#22 - long-read only polishing error: Error, task only accept: [all,1,2,3,4]

Issue - State: closed - Opened by gitcruz over 4 years ago - 1 comment

#21 - ModuleNotFoundError: No module named 'urllib2

Issue - State: closed - Opened by yangzuokun almost 5 years ago - 2 comments

#20 - Genome size halved after polishing

Issue - State: closed - Opened by SYSU-SinLee almost 5 years ago - 4 comments

#19 - [ERROR] 2020-01-13 15:40:14,058 Error, task only accept: [all,1,2,3,4]

Issue - State: closed - Opened by AntoineHo about 5 years ago - 2 comments

#18 - working with previously-created alignments

Issue - State: closed - Opened by dvera about 5 years ago - 1 comment

#17 - The example script for local polishing has some mistakes.

Issue - State: closed - Opened by GRGong about 5 years ago - 1 comment

#16 - Parameters for PacBio long reads polishing

Issue - State: closed - Opened by GRGong about 5 years ago - 1 comment

#15 - make：No reaction

Issue - State: closed - Opened by chenji333 about 5 years ago - 5 comments

#14 - make: *** [Makefile:13: seq_split] Error 1

Issue - State: closed - Opened by liufeibio about 5 years ago - 1 comment

#13 - ctypes.ArgumentError: argument 1: <class 'TypeError'>: wrong type

Issue - State: closed - Opened by berombau about 5 years ago - 4 comments

#12 - Support for paired and unpaired short reads input

Issue - State: closed - Opened by berombau about 5 years ago - 2 comments

#11 - The completeness evaluated by BUSCO

Issue - State: closed - Opened by yilunhuangyue about 5 years ago - 4 comments

#10 - job halted while runing 05.polish.ref.sh

Issue - State: closed - Opened by ShuChen1986 about 5 years ago - 5 comments

#9 - job_type = local

Issue - State: closed - Opened by shehongbing about 5 years ago - 1 comment

#8 - What's the lowercase letters

Issue - State: closed - Opened by lilinzhou over 5 years ago - 7 comments

#7 - erro occurred in test

Issue - State: closed - Opened by lifan18 over 5 years ago - 5 comments

#6 - some errors

Issue - State: closed - Opened by wbglizhizhong over 5 years ago - 1 comment

#5 - questions about make

Issue - State: closed - Opened by wbglizhizhong over 5 years ago - 3 comments
Labels: bug

#4 - NextPolish-1.04 Segmentation fault (core dumped)

Issue - State: closed - Opened by wangzhennan14 over 5 years ago - 8 comments

#3 - Errors or waining?

Issue - State: closed - Opened by wangzhennan14 over 5 years ago - 2 comments

#2 - Error when installed

Issue - State: closed - Opened by wangzhennan14 over 5 years ago - 1 comment
Labels: question

#1 - Question about NextPolish

Issue - State: closed - Opened by wangzhennan14 over 5 years ago - 1 comment
Labels: question

GitHub / nextomics/nextpolish issues and pull requests