Ecosyste.ms: Issues

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GitHub / nextflow-io/training issues and pull requests

#489 - Update 01_run_with_cli.md

Pull Request - State: open - Opened by pinin4fjords 9 days ago - 1 comment

#488 - 🔧 config: add issue template config and bug report template

Pull Request - State: open - Opened by kenibrewer 17 days ago - 1 comment

#486 - New multi-course structure for training materials

Pull Request - State: open - Opened by vdauwera about 1 month ago - 1 comment

#485 - last min touches

Pull Request - State: closed - Opened by mribeirodantas about 1 month ago - 1 comment

#483 - training.nextflow.io Part 1: Hello World - missing braces on greeting param

Issue - State: closed - Opened by cymon about 2 months ago - 1 comment

#482 - Update devcontainer.json for new path structure

Pull Request - State: open - Opened by pinin4fjords about 2 months ago - 1 comment

#481 - update paths to work with flex

Pull Request - State: open - Opened by FriederikeHanssen about 2 months ago - 3 comments

#480 - Better handle assets dir in nf-core section

Pull Request - State: closed - Opened by pinin4fjords about 2 months ago - 2 comments

#479 - Add plugins coverage

Issue - State: open - Opened by pinin4fjords about 2 months ago
Labels: enhancement

#478 - Module proposal: Hello workflows

Issue - State: open - Opened by pinin4fjords about 2 months ago

#477 - Fix params.outdir in hello-config

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#476 - Account for part 1 in the nf-core training

Pull Request - State: closed - Opened by FriederikeHanssen about 2 months ago - 1 comment

#475 - Add final statement for nf-test to sum up some final advantages of testing

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#473 - Additional curly bracket in hello-nf-test doc

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#472 - Move parameters to above profiles for correct handling of params

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#471 - Replace numeric with named outputs for GATK_HAPLOTYPECALLER

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#470 - Drop number of CPUs configured in hello series to 4

Pull Request - State: closed - Opened by adamrtalbot about 2 months ago - 1 comment

#469 - Reduce core usage in hello-config

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#468 - tiny fix for https://github.com/nextflow-io/training/pull/467

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#467 - Correct hangover from before we added all the script:

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 2 comments

#466 - Basics of Nextflow and Workflow Scripting

Pull Request - State: closed - Opened by putriimnida 2 months ago - 1 comment

#465 - change messaging on publishing

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#464 - Make cd less specific

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#463 - Update Nextflow version to latest stable (24.10.0)

Pull Request - State: closed - Opened by robsyme 2 months ago - 3 comments

#462 - Adjust paths so that Gitpod (original) mounting points

Pull Request - State: closed - Opened by robsyme 2 months ago - 4 comments

#461 - Small improvements to add additional context/explanations

Pull Request - State: closed - Opened by ejseqera 2 months ago - 7 comments

#460 - Add context for using projectDir after first introduction

Pull Request - State: closed - Opened by ejseqera 2 months ago - 1 comment

#459 - No longer any need to pin to an outdated edge version of Nextflow.

Pull Request - State: closed - Opened by robsyme 2 months ago - 5 comments

#458 - Executable-fixes

Pull Request - State: closed - Opened by robsyme 2 months ago - 3 comments

#457 - Fix images

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#456 - Correct cowsay -> quote transition

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 5 comments

#455 - Fix minor issues in the hello nextflow training

Pull Request - State: closed - Opened by mribeirodantas 2 months ago - 1 comment

#454 - Fix referenced path to getQuote solutions

Pull Request - State: closed - Opened by ejseqera 2 months ago - 2 comments

#453 - Move tip about view operator further up after introducing

Pull Request - State: closed - Opened by ejseqera 2 months ago - 2 comments

#452 - Fix channel construction for greeting input

Pull Request - State: closed - Opened by ejseqera 2 months ago - 2 comments

#451 - More specific workspaceMounts for devcontainer

Pull Request - State: closed - Opened by robsyme 2 months ago - 3 comments

#450 - replace view with dump

Pull Request - State: open - Opened by FriederikeHanssen 2 months ago - 1 comment

#449 - Better describe use of flatten

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 1 comment

#448 - Nfcore intermediate training

Pull Request - State: closed - Opened by FriederikeHanssen 2 months ago - 2 comments

#447 - Update devcontainer.json to set NXF_HOME to writable path

Pull Request - State: closed - Opened by pinin4fjords 2 months ago - 3 comments

#444 - docs (hello-seqera): use env variable for saving token

Pull Request - State: closed - Opened by kenibrewer 2 months ago - 1 comment

#443 - Add nf-core intermediate training

Pull Request - State: closed - Opened by FriederikeHanssen 2 months ago - 5 comments

#439 - Apply automatic formatting with the vscode extension

Pull Request - State: open - Opened by adamrtalbot 2 months ago - 4 comments

#438 - Use relative paths for inputs to make the training portable

Pull Request - State: open - Opened by adamrtalbot 2 months ago - 3 comments

#436 - Update to nf-test

Pull Request - State: open - Opened by adamrtalbot 2 months ago - 3 comments

#433 - Add an outdir parameter for 'hello genomics' onwards

Pull Request - State: closed - Opened by pinin4fjords 3 months ago - 2 comments

#431 - Fixes Add indents to match destination of code blocks #422

Pull Request - State: open - Opened by mribeirodantas 3 months ago - 2 comments

#365 - Use Nextflow stable version 24.10.0

Issue - State: closed - Opened by adamrtalbot 5 months ago - 4 comments
Labels: enhancement, gitpod

#100 - quizz example, dont merge

Pull Request - State: closed - Opened by jorgeaguileraseqera over 2 years ago - 3 comments

#100 - quizz example, dont merge

Pull Request - State: closed - Opened by jorgeaguileraseqera over 2 years ago - 3 comments

#99 - Update deprecated qualifiers

Pull Request - State: closed - Opened by mribeirodantas over 2 years ago - 8 comments

#99 - Update deprecated qualifiers

Pull Request - State: closed - Opened by mribeirodantas over 2 years ago - 8 comments

#98 - Update deprecated qualifiers

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#98 - Update deprecated qualifiers

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#97 - Check that channels are always declared

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#97 - Check that channels are always declared

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#96 - Fix Youtube link

Issue - State: closed - Opened by marcodelapierre over 2 years ago - 2 comments

#96 - Fix Youtube link

Issue - State: closed - Opened by marcodelapierre over 2 years ago - 2 comments

#95 - Modules_Capitals

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 3 comments

#95 - Modules_Capitals

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 3 comments

#94 - Modules capitals

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#94 - Modules capitals

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#93 - Modules redo 23 june

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 7 comments

#93 - Modules redo 23 june

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 7 comments

#92 - Dsl2 conversion

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 3 comments

#92 - Dsl2 conversion

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 3 comments

#91 - Fix day1

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#91 - Fix day1

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#90 - Update_unset

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 3 comments

#90 - Update_unset

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 3 comments

#89 - Staging

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 4 comments

#89 - Staging

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 4 comments

#88 - Process update

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#88 - Process update

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#87 - Hello tidy

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#87 - Hello tidy

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#86 - Script updates

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#86 - Script updates

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#85 - Update welcome.adoc

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#85 - Update welcome.adoc

Pull Request - State: closed - Opened by christopher-hakkaart over 2 years ago - 1 comment

#84 - Docker container test

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#84 - Docker container test

Pull Request - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#83 - Improve English

Pull Request - State: closed - Opened by mribeirodantas over 2 years ago - 1 comment

#83 - Improve English

Pull Request - State: closed - Opened by mribeirodantas over 2 years ago - 1 comment

#82 - Dsl2 conversion

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 4 comments

#82 - Dsl2 conversion

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 4 comments

#81 - Bringing Staging inline with Master

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 2 comments

#81 - Bringing Staging inline with Master

Pull Request - State: closed - Opened by evanfloden over 2 years ago - 2 comments

#80 - Removed section processes L316

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#80 - Removed section processes L316

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#79 - Add example using secret keys

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#79 - Add example using secret keys

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#78 - Tidy up branches

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#78 - Tidy up branches

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 1 comment

#77 - Add working Email call in the RNA-Seq pipeline tutorial

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#77 - Add working Email call in the RNA-Seq pipeline tutorial

Issue - State: open - Opened by chriswyatt1 over 2 years ago

#76 - Review antora version

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 2 comments

#76 - Review antora version

Issue - State: closed - Opened by chriswyatt1 over 2 years ago - 2 comments