Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nextflow-io/nf-validation issues and pull requests

#108 - provide schema path through the options map in validateParameters()

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#107 - bump to 0.3.4

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#106 - Do not check S3 URL paths

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#106 - Do not check S3 URL paths

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#105 - bump to version 0.3.3

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#105 - bump to version 0.3.3

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#104 - do not validate S3 URL paths by default

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#103 - Validation Error when trying to run test

Issue - State: closed - Opened by Dane-Z about 1 year ago - 3 comments

#101 - Monochrome logs is option in functions rather than global parameter

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 15 comments

#101 - Monochrome logs is option in functions rather than global parameter

Pull Request - State: closed - Opened by adamrtalbot about 1 year ago - 15 comments

#100 - Support multiple input files via globbing or patterns

Issue - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment
Labels: enhancement, hackathon

#100 - Support multiple input files via globbing or patterns

Issue - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment
Labels: enhancement, hackathon

#99 - Move params.monochrome_logs to local scope

Issue - State: closed - Opened by adamrtalbot about 1 year ago - 1 comment

#98 - Handle no header samplesheet

Issue - State: closed - Opened by maxulysse about 1 year ago
Labels: enhancement, hackathon

#98 - Handle no header samplesheet

Issue - State: closed - Opened by maxulysse about 1 year ago
Labels: enhancement, hackathon

#96 - add LICENSE file

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#96 - add LICENSE file

Pull Request - State: closed - Opened by mirpedrol about 1 year ago

#94 - Add possibility for direct schema

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago - 4 comments

#94 - Add possibility for direct schema

Pull Request - State: closed - Opened by LouisLeNezet about 1 year ago - 4 comments

#93 - Release PR 0.3.2

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago - 1 comment

#93 - Release PR 0.3.2

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago - 1 comment

#92 - AWS error when iGenomes path is defined

Issue - State: closed - Opened by matthdsm about 1 year ago - 3 comments

#92 - AWS error when iGenomes path is defined

Issue - State: closed - Opened by matthdsm about 1 year ago - 3 comments

#91 - rename the schema_filename option from fromSamplesheet

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago - 2 comments

#91 - rename the schema_filename option from fromSamplesheet

Pull Request - State: closed - Opened by nvnieuwk about 1 year ago - 2 comments

#90 - Very slow validation for single-end fastq samplesheets

Issue - State: closed - Opened by apetkau about 1 year ago - 5 comments
Labels: enhancement, hackathon

#90 - Very slow validation for single-end fastq samplesheets

Issue - State: closed - Opened by apetkau about 1 year ago - 5 comments
Labels: enhancement, hackathon

#88 - Update validator library to erosb/json-sKema

Issue - State: closed - Opened by mirpedrol over 1 year ago - 1 comment
Labels: bug

#88 - Update validator library to erosb/json-sKema

Issue - State: closed - Opened by mirpedrol over 1 year ago - 1 comment
Labels: bug

#87 - feature request: check existance of format 'file-path' fields in samplesheet

Issue - State: closed - Opened by cmatKhan over 1 year ago - 1 comment

#87 - feature request: check existance of format 'file-path' fields in samplesheet

Issue - State: closed - Opened by cmatKhan over 1 year ago - 1 comment

#84 - Specifying empty params (e.g. clusterOptions in profile) breaks with nf-validation 0.3.1

Issue - State: closed - Opened by pontus over 1 year ago - 2 comments
Labels: bug

#84 - Specifying empty params (e.g. clusterOptions in profile) breaks with nf-validation 0.3.1

Issue - State: closed - Opened by pontus over 1 year ago - 2 comments
Labels: bug

#83 - Remove navigation tabs

Pull Request - State: closed - Opened by ewels over 1 year ago

#83 - Remove navigation tabs

Pull Request - State: closed - Opened by ewels over 1 year ago

#82 - Add samplesheet examples

Pull Request - State: closed - Opened by adamrtalbot over 1 year ago - 7 comments

#81 - When parsing samplesheets, group values into ordered lists

Issue - State: closed - Opened by adamrtalbot over 1 year ago - 3 comments

#81 - When parsing samplesheets, group values into ordered lists

Issue - State: closed - Opened by adamrtalbot over 1 year ago - 3 comments

#80 - Update fromSamplesheet.md wording slightly.

Pull Request - State: closed - Opened by adamrtalbot over 1 year ago - 2 comments

#80 - Update fromSamplesheet.md wording slightly.

Pull Request - State: closed - Opened by adamrtalbot over 1 year ago - 2 comments

#79 - add parameters from schema top level as expected params

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#79 - add parameters from schema top level as expected params

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#78 - Support for simple arrays in YAML samplesheets

Issue - State: closed - Opened by awgymer over 1 year ago - 8 comments
Labels: enhancement, hackathon

#78 - Support for simple arrays in YAML samplesheets

Issue - State: closed - Opened by awgymer over 1 year ago - 8 comments
Labels: enhancement, hackathon

#77 - bump to version 0.3.1

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#77 - bump to version 0.3.1

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#76 - Don't validate a file if the parameter evaluates to false

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#76 - Don't validate a file if the parameter evaluates to false

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#75 - Add a link to the slack channel in the docs

Issue - State: closed - Opened by nvnieuwk over 1 year ago - 4 comments
Labels: documentation

#75 - Add a link to the slack channel in the docs

Issue - State: closed - Opened by nvnieuwk over 1 year ago - 4 comments
Labels: documentation

#74 - don't check if path exists if param is not true

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#74 - don't check if path exists if param is not true

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#73 - bump to 0.3.0

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#73 - bump to 0.3.0

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 1 comment

#72 - Duplicate checking

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#72 - Duplicate checking

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 1 comment

#70 - Default to report an error if the rows in a sample sheet are not unique

Issue - State: closed - Opened by mirpedrol over 1 year ago - 6 comments

#70 - Default to report an error if the rows in a sample sheet are not unique

Issue - State: closed - Opened by mirpedrol over 1 year ago - 6 comments

#68 - Revert ImmutableMap

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 3 comments

#68 - Revert ImmutableMap

Pull Request - State: closed - Opened by mirpedrol over 1 year ago - 3 comments

#67 - small docs modifications

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#67 - small docs modifications

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#66 - assume default 'false'

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#66 - assume default 'false'

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#65 - Print param name when path does not exist

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#65 - Print param name when path does not exist

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#63 - Allow quoted fields for csv files in .fromSamplesheet()

Pull Request - State: closed - Opened by koenbossers over 1 year ago - 3 comments

#63 - Allow quoted fields for csv files in .fromSamplesheet()

Pull Request - State: closed - Opened by koenbossers over 1 year ago - 3 comments

#61 - When a input file is optional, `validateParameters()` should not raise an error

Issue - State: closed - Opened by koenbossers over 1 year ago - 7 comments
Labels: bug

#61 - When a input file is optional, `validateParameters()` should not raise an error

Issue - State: closed - Opened by koenbossers over 1 year ago - 7 comments
Labels: bug

#60 - Include specific error incorrect schema location fromSamplesheet

Issue - State: closed - Opened by Joon-Klaps over 1 year ago - 3 comments

#60 - Include specific error incorrect schema location fromSamplesheet

Issue - State: closed - Opened by Joon-Klaps over 1 year ago - 3 comments

#59 - Proposed fix issue #58

Pull Request - State: closed - Opened by koenbossers over 1 year ago

#59 - Proposed fix issue #58

Pull Request - State: closed - Opened by koenbossers over 1 year ago

#58 - Samplesheet fields that are not defined in samplesheet schema should be silently ignored

Issue - State: closed - Opened by koenbossers over 1 year ago - 5 comments
Labels: good first issue

#58 - Samplesheet fields that are not defined in samplesheet schema should be silently ignored

Issue - State: closed - Opened by koenbossers over 1 year ago - 5 comments
Labels: good first issue

#56 - Improve error handling

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#56 - Improve error handling

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#55 - Add a changelog

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 4 comments

#55 - Add a changelog

Pull Request - State: closed - Opened by nvnieuwk over 1 year ago - 4 comments

#54 - When validating if a path exists, trap exception and add context

Issue - State: closed - Opened by tfenne over 1 year ago - 1 comment
Labels: enhancement, hackathon

#54 - When validating if a path exists, trap exception and add context

Issue - State: closed - Opened by tfenne over 1 year ago - 1 comment
Labels: enhancement, hackathon

#53 - Any chance of making release notes on GitHub for recent (and future) releases?

Issue - State: closed - Opened by tfenne over 1 year ago - 2 comments

#53 - Any chance of making release notes on GitHub for recent (and future) releases?

Issue - State: closed - Opened by tfenne over 1 year ago - 2 comments

#51 - only validate a file if the file is provided

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#51 - only validate a file if the file is provided

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#50 - only check if path exist if path is provided with the parameter

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#50 - only check if path exist if path is provided with the parameter

Pull Request - State: closed - Opened by mirpedrol over 1 year ago

#49 - "exists" should only check if a path exists if the value is provided

Issue - State: closed - Opened by mirpedrol over 1 year ago
Labels: bug