Ecosyste.ms: Issues

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GitHub / nextflow-io/nf-schema issues and pull requests

#76 - Fixes display of configFiles entries in parameter summary text

Pull Request - State: closed - Opened by scwatts 3 months ago - 4 comments

#76 - Fixes display of configFiles entries in parameter summary text

Pull Request - State: closed - Opened by scwatts 3 months ago - 4 comments

#74 - Release 2.2.0

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#74 - Release 2.2.0

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#73 - Add decent error messages for wrongly used file-path-pattern

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#73 - Add decent error messages for wrongly used file-path-pattern

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#72 - add missing depedency for email format support

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#72 - add missing depedency for email format support

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#71 - Improve custom error message handling

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#71 - Improve custom error message handling

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#70 - Fix race conditions

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#70 - Fix race conditions

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#69 - Add a warning to the `exists` docs

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#69 - Add a warning to the `exists` docs

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#68 - Missing class for handling email format if parameter is passed with an email value

Issue - State: closed - Opened by toniher 3 months ago - 1 comment
Labels: bug

#68 - Missing class for handling email format if parameter is passed with an email value

Issue - State: closed - Opened by toniher 3 months ago - 1 comment
Labels: bug

#67 - Non-informative message for file-path format that should be file-path-pattern

Issue - State: closed - Opened by toniher 3 months ago - 1 comment
Labels: bug, enhancement

#67 - Non-informative message for file-path format that should be file-path-pattern

Issue - State: closed - Opened by toniher 3 months ago - 1 comment
Labels: bug, enhancement

#66 - Add extra config options

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#66 - Add extra config options

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 1 comment

#65 - Fix using `samplesheetToList` multiple times in channel operators

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 4 comments

#65 - Fix using `samplesheetToList` multiple times in channel operators

Pull Request - State: closed - Opened by nvnieuwk 3 months ago - 4 comments

#64 - Consider displaying both technical (nf-schema default) and human-readable errors (`message:`) to users

Issue - State: closed - Opened by jfy133 3 months ago - 1 comment
Labels: enhancement

#64 - Consider displaying both technical (nf-schema default) and human-readable errors (`message:`) to users

Issue - State: closed - Opened by jfy133 3 months ago - 1 comment
Labels: enhancement

#63 - Fix `uniqueEntries` on empty optional values

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#63 - Fix `uniqueEntries` on empty optional values

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#59 - Empty values are also validated (for being unique)

Issue - State: closed - Opened by Joon-Klaps 3 months ago - 2 comments
Labels: bug

#59 - Empty values are also validated (for being unique)

Issue - State: closed - Opened by Joon-Klaps 3 months ago - 2 comments
Labels: bug

#58 - Fix wrong info in the docs

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#58 - Fix wrong info in the docs

Pull Request - State: closed - Opened by nvnieuwk 3 months ago

#57 - Don't run `exists` checks when the format is not a file format

Issue - State: closed - Opened by nvnieuwk 3 months ago - 1 comment
Labels: bug

#57 - Don't run `exists` checks when the format is not a file format

Issue - State: closed - Opened by nvnieuwk 3 months ago - 1 comment
Labels: bug

#56 - feat: add nf_test_output to ignoreParams

Pull Request - State: closed - Opened by emmcauley 4 months ago

#56 - feat: add nf_test_output to ignoreParams

Pull Request - State: closed - Opened by emmcauley 4 months ago

#55 - Using samplesheetToList twice gives corrupted output channels

Issue - State: closed - Opened by SPPearce 4 months ago - 4 comments
Labels: bug

#55 - Using samplesheetToList twice gives corrupted output channels

Issue - State: closed - Opened by SPPearce 4 months ago - 4 comments
Labels: bug

#54 - Ignore the `nf_test_output` parameter

Issue - State: closed - Opened by nvnieuwk 5 months ago - 2 comments
Labels: enhancement

#53 - Fix small issues in the migration commands

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 1 comment

#53 - Fix small issues in the migration commands

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 1 comment

#52 - Use a trace observer for the help message creation instead of the extensionpoint

Issue - State: open - Opened by nvnieuwk 5 months ago
Labels: enhancement

#52 - Use a trace observer for the help message creation instead of the extensionpoint

Issue - State: open - Opened by nvnieuwk 5 months ago
Labels: enhancement

#51 - Idea: Validate parameters when the parameter has been changed

Issue - State: open - Opened by nvnieuwk 5 months ago - 9 comments
Labels: feature request

#51 - Idea: Validate parameters when the parameter has been changed

Issue - State: open - Opened by nvnieuwk 5 months ago - 9 comments
Labels: feature request

#50 - Add smarter typecasting to the samplesheet converter

Issue - State: open - Opened by nvnieuwk 5 months ago
Labels: enhancement

#50 - Add smarter typecasting to the samplesheet converter

Issue - State: open - Opened by nvnieuwk 5 months ago
Labels: enhancement

#49 - More patch fixes

Pull Request - State: closed - Opened by nvnieuwk 5 months ago

#49 - More patch fixes

Pull Request - State: closed - Opened by nvnieuwk 5 months ago

#48 - Fix the uniqueEntries filtering

Pull Request - State: closed - Opened by stekaz 5 months ago - 3 comments

#48 - Fix the uniqueEntries filtering

Pull Request - State: closed - Opened by stekaz 5 months ago - 3 comments

#47 - Fix help params being unexpected parameters

Pull Request - State: closed - Opened by nvnieuwk 5 months ago

#45 - Add an option to hide params from the summary

Issue - State: closed - Opened by nvnieuwk 5 months ago
Labels: bug

#45 - Add an option to hide params from the summary

Issue - State: closed - Opened by nvnieuwk 5 months ago
Labels: bug

#44 - `beforeText` and `afterText` for summary logs + color filter

Pull Request - State: closed - Opened by nvnieuwk 5 months ago

#44 - `beforeText` and `afterText` for summary logs + color filter

Pull Request - State: closed - Opened by nvnieuwk 5 months ago

#42 - Update docs with latest changes

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 2 comments

#42 - Update docs with latest changes

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 2 comments

#41 - Improvement/help messages

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 2 comments

#41 - Improvement/help messages

Pull Request - State: closed - Opened by nvnieuwk 5 months ago - 2 comments

#40 - support $defs

Pull Request - State: closed - Opened by nvnieuwk 6 months ago

#40 - support $defs

Pull Request - State: closed - Opened by nvnieuwk 6 months ago

#39 - Feat/nested params

Pull Request - State: closed - Opened by nvnieuwk 6 months ago - 1 comment

#39 - Feat/nested params

Pull Request - State: closed - Opened by nvnieuwk 6 months ago - 1 comment

#38 - Add a warning about nf-core tooling to the migration guide

Pull Request - State: closed - Opened by nvnieuwk 7 months ago

#38 - Add a warning about nf-core tooling to the migration guide

Pull Request - State: closed - Opened by nvnieuwk 7 months ago

#37 - Fix org.json vulnerability

Pull Request - State: closed - Opened by nvnieuwk 7 months ago - 1 comment

#37 - Fix org.json vulnerability

Pull Request - State: closed - Opened by nvnieuwk 7 months ago - 1 comment

#36 - request: vulnerability fix

Issue - State: closed - Opened by mvforster 7 months ago - 6 comments

#36 - request: vulnerability fix

Issue - State: closed - Opened by mvforster 7 months ago - 6 comments

#34 - Sample sheet channel factory docs tweaks

Pull Request - State: closed - Opened by ewels 9 months ago

#34 - Sample sheet channel factory docs tweaks

Pull Request - State: closed - Opened by ewels 9 months ago

#33 - Docs: Fix edit link

Pull Request - State: closed - Opened by ewels 9 months ago - 3 comments

#33 - Docs: Fix edit link

Pull Request - State: closed - Opened by ewels 9 months ago - 3 comments

#32 - Schema has allOf, but no definitions

Issue - State: closed - Opened by chriswyatt1 9 months ago - 2 comments

#32 - Schema has allOf, but no definitions

Issue - State: closed - Opened by chriswyatt1 9 months ago - 2 comments

#31 - Can we have a failUnrecognisedSamplesheetField or something similar

Issue - State: closed - Opened by maxulysse 9 months ago - 3 comments

#31 - Can we have a failUnrecognisedSamplesheetField or something similar

Issue - State: closed - Opened by maxulysse 9 months ago - 3 comments

#30 - Update meta schema

Pull Request - State: open - Opened by nvnieuwk 9 months ago - 2 comments

#30 - Update meta schema

Pull Request - State: open - Opened by nvnieuwk 9 months ago - 2 comments

#29 - Do not validate Azure or GCP storage paths

Pull Request - State: closed - Opened by adamrtalbot 9 months ago - 6 comments

#29 - Do not validate Azure or GCP storage paths

Pull Request - State: closed - Opened by adamrtalbot 9 months ago - 6 comments

#28 - Migration to nf-schema 2: `samplesheetToList` not found in `plugin/nf-schema`

Issue - State: closed - Opened by Tobiaspk 9 months ago - 17 comments
Labels: bug

#28 - Migration to nf-schema 2: `samplesheetToList` not found in `plugin/nf-schema`

Issue - State: closed - Opened by Tobiaspk 9 months ago - 17 comments
Labels: bug

#27 - Add validation with nested schemas

Pull Request - State: closed - Opened by nvnieuwk 9 months ago

#27 - Add validation with nested schemas

Pull Request - State: closed - Opened by nvnieuwk 9 months ago

#26 - Silenced false warnings

Pull Request - State: closed - Opened by nvnieuwk 9 months ago - 1 comment

#26 - Silenced false warnings

Pull Request - State: closed - Opened by nvnieuwk 9 months ago - 1 comment

#25 - Implement validation of nested schema

Issue - State: closed - Opened by mirpedrol over 1 year ago - 5 comments
Labels: enhancement