neves-p/daisierobustness issues and pull requests

#69 - replicates seems like an unused argument in calc_error()

Pull Request - State: closed - Opened by Neves-P 6 months ago - 1 comment

#68 - `replicates` seems like an unused argument in `calc_error()`.

Pull Request - State: closed - Opened by Yangshen0325 6 months ago - 1 comment

#67 - New pars

Pull Request - State: closed - Opened by joshwlambert almost 3 years ago

#66 - Rm abs

Pull Request - State: closed - Opened by joshwlambert almost 3 years ago - 1 comment

#65 - Sim coverage into develop

Pull Request - State: closed - Opened by Neves-P almost 3 years ago

#64 - Sim coverage

Pull Request - State: closed - Opened by joshwlambert almost 3 years ago - 5 comments

#63 - Bug: Simulation paramters hang simulations

Issue - State: closed - Opened by Neves-P almost 3 years ago - 2 comments
Labels: invalid

#62 - Remove non-oceanic sea-level parameter space

Issue - State: closed - Opened by joshwlambert over 3 years ago

#61 - loglik == Inf

Issue - State: closed - Opened by Neves-P over 3 years ago

#60 - Depend on DAISIE v3.2.0

Issue - State: closed - Opened by Neves-P over 3 years ago
Labels: depends

#59 - Add and tidy plot code for upcoming publication

Issue - State: closed - Opened by Neves-P over 3 years ago - 1 comment

#58 - Release v2.1.0

Issue - State: closed - Opened by Neves-P over 3 years ago
Labels: high priority, depends

#57 - Document calc_error_metrics() arguments

Issue - State: closed - Opened by Neves-P almost 4 years ago
Labels: documentation

#56 - Resolve objects being ovewritten by functions

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: bug

#55 - Release v1.2.0

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: high priority, depends

#54 - Bump version, write NEWS.md

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: high priority, depends

#53 - Ensure pipeline finishes and saves

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: high priority

#52 - Add new tests for reworked pipeline

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: high priority

#51 - Pass reference tests in new pipeline

Issue - State: closed - Opened by Neves-P almost 4 years ago - 1 comment
Labels: high priority

#50 - Add conditioning on number of colonizations

Issue - State: closed - Opened by Neves-P about 4 years ago
Labels: high priority

#49 - Relax ml_constraints

Issue - State: closed - Opened by Neves-P about 4 years ago - 1 comment
Labels: high priority

#48 - Relax sim_constraints

Issue - State: closed - Opened by Neves-P about 4 years ago
Labels: high priority

#47 - Xenial build fails due to ape + imagemagick

Issue - State: closed - Opened by Neves-P about 4 years ago - 1 comment
Labels: high priority

#46 - Depend on [email protected]

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: depends, low priority

#45 - Depend on DAISIE/[email protected]

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: depends

#44 - Release v1.0.3

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: high priority, depends

#43 - calc_ml uses no diversity dependence

Issue - State: closed - Opened by Neves-P over 4 years ago - 2 comments
Labels: bug, high priority

#42 - Release v1.0.1

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: high priority, depends

#41 - Expand test coverage to failed ML convergence

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: enhancement, wontfix, depends, low priority

#40 - ML convergence failure in Peregrine but not locally

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: wontfix, low priority

#39 - Pass reference tests

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: high priority

#38 - save_output bug when ml_constraints_1 or ml_constraints_2 are FALSE

Issue - State: closed - Opened by Neves-P over 4 years ago - 3 comments
Labels: bug

#37 - Fix reference tests after initpars K change

Issue - State: closed - Opened by Neves-P over 4 years ago

#36 - Return all ml_pars in output

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: enhancement

#35 - K in initparsopt should depend on richest clade

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: enhancement

#34 - Convert error metrics e.g. KS distance to functions in calc_error_metrics

Issue - State: closed - Opened by Neves-P over 4 years ago

#33 - Allow user to choose nLTT distance_method

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: enhancement

#32 - jap integration for run_analysis

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: bug, high priority

#31 - Add @richelbilderbeek as contributor 👁

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment

#30 - Make run_analysis apply to a subset of novel_sim output

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: enhancement, high priority

#29 - Fix/Expose macOS inconsistency vs unix and Windows

Issue - State: closed - Opened by Neves-P over 4 years ago - 3 comments
Labels: wontfix, low priority

#28 - Expand AppVeyor test coverage

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: low priority

#27 - Expand macOS test coverage

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: wontfix, depends, low priority

#26 - Add tests on trait after trait branch merge into develop/master in DAISIE package

Issue - State: closed - Opened by xieshu95 over 4 years ago - 3 comments
Labels: depends

#25 - Write function that removes excess info from data simulated with old pipeline

Issue - State: closed - Opened by joshwlambert over 4 years ago - 1 comment
Labels: medium priority

#24 - Add jitter option after rsetienne/DDD@develop change

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: high priority

#23 - Release v1.0.0

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: depends

#22 - Tests take too long and covr fails

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment
Labels: high priority

#21 - lint

Issue - State: closed - Opened by Neves-P over 4 years ago

#20 - Reactivate test-decide_best_pars

Issue - State: closed - Opened by Neves-P over 4 years ago

#19 - decide_best_pars returns `NULL` differences

Issue - State: closed - Opened by Neves-P over 4 years ago

#18 - run_analysis is_simulation_output check fails

Issue - State: closed - Opened by Neves-P over 4 years ago

#17 - Fix failing run_robustness tests

Issue - State: closed - Opened by Neves-P over 4 years ago

#16 - Merge master into geodynamics

Issue - State: closed - Opened by joshwlambert over 4 years ago

#15 - Merge master into trait

Issue - State: closed - Opened by joshwlambert over 4 years ago

#14 - Make develop branch

Issue - State: closed - Opened by joshwlambert over 4 years ago

#13 - Delete master-clone branch

Issue - State: closed - Opened by joshwlambert over 4 years ago

#12 - Write test for run_analysis

Issue - State: closed - Opened by joshwlambert over 4 years ago - 3 comments
Labels: high priority

#11 - Edit names of test files to match new function names

Issue - State: closed - Opened by joshwlambert over 4 years ago - 1 comment

#10 - Fix failing tests

Issue - State: closed - Opened by Neves-P over 4 years ago - 1 comment

#9 - Correct blame/praise in documentation

Issue - State: closed - Opened by Neves-P over 4 years ago
Labels: documentation, low priority

#8 - Update robustness_specs.md

Issue - State: closed - Opened by joshwlambert over 4 years ago
Labels: documentation, low priority

#7 - Update simulation_run_script with new novel_sim code

Issue - State: closed - Opened by joshwlambert over 4 years ago

#6 - Write vignette

Issue - State: closed - Opened by joshwlambert over 4 years ago
Labels: documentation, low priority

#5 - Write contributing.md

Issue - State: closed - Opened by joshwlambert over 4 years ago
Labels: low priority

#4 - Delete step_by_step_pipeline function

Issue - State: closed - Opened by joshwlambert over 4 years ago

#3 - Fix documentation warnings on master-clone

Issue - State: closed - Opened by Neves-P over 4 years ago

#2 - Add branch-specific travis badges to readme

Issue - State: closed - Opened by joshwlambert over 4 years ago

#1 - Add branch-specific codecov badges to readme

Issue - State: closed - Opened by joshwlambert over 4 years ago - 1 comment

GitHub / neves-p/daisierobustness issues and pull requests