Ecosyste.ms: Issues

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GitHub / neurosynth/neurosynth issues and pull requests

#105 - dataset.download does not work anymore..

Issue - State: closed - Opened by JAQuent 8 months ago - 1 comment

#104 - Update Masker for newer version of nibabel

Issue - State: open - Opened by cvklein 8 months ago - 5 comments

#103 - Cluster perm

Pull Request - State: closed - Opened by sailingpeng over 1 year ago

#102 - Default URL for current_data.tar.gz is 404

Issue - State: open - Opened by nicholst over 1 year ago

#101 - Outdated for new data structure?

Issue - State: closed - Opened by seunggookim almost 3 years ago - 2 comments

#100 - [FIX] Decoding with mask

Pull Request - State: closed - Opened by ReinderVosDeWael about 3 years ago - 2 comments

#99 - Fix dependency issues

Pull Request - State: closed - Opened by adelavega over 3 years ago

#98 - some codes modified for pandas >= 1.0

Pull Request - State: closed - Opened by mybirth0407 over 3 years ago - 1 comment

#97 - add_features fails

Issue - State: closed - Opened by ehsankakaei91 over 3 years ago - 2 comments

#96 - add_features() returns error

Issue - State: closed - Opened by vnckppl over 3 years ago - 2 comments

#95 - upgrade to latest scikit-learn version

Pull Request - State: closed - Opened by haoshuji almost 4 years ago - 1 comment

#94 - Compatibility with newer version of pandas (1.x.x)

Pull Request - State: closed - Opened by tgy over 4 years ago - 2 comments

#93 - Updates because of Pandas deprecations

Pull Request - State: closed - Opened by ajuavinett over 4 years ago - 2 comments

#92 - use NIDM results for decoder

Issue - State: closed - Opened by Remi-Gau over 4 years ago - 4 comments

#91 - Please push out a new release

Issue - State: closed - Opened by yarikoptic almost 5 years ago - 3 comments

#90 - Using the Decoder (from examples) with a given mask

Issue - State: open - Opened by jnvandermeer about 5 years ago

#89 - neurosynth.org is down

Issue - State: closed - Opened by kchawla-pi over 5 years ago - 2 comments

#88 - cross_validation is deprecated in sklearn 0.20.2

Issue - State: open - Opened by boredStats over 5 years ago

#87 - replace sklearn's deprecated RandomizedPCA with PCA

Pull Request - State: closed - Opened by tyarkoni over 5 years ago

#86 - Fixed MetaAnalysis images (#85)

Pull Request - State: closed - Opened by meng-du over 5 years ago - 1 comment

#85 - pA > 1?

Issue - State: closed - Opened by meng-du over 5 years ago - 3 comments
Labels: bug

#84 - Fixed stats.fdr bug to handle edge of single passing test

Pull Request - State: closed - Opened by ejolly over 5 years ago - 3 comments

#83 - add Year to the "Studies" table?

Issue - State: open - Opened by yarikoptic over 5 years ago

#82 - Extracting info based on coordinate

Issue - State: open - Opened by yasharz almost 6 years ago

#81 - Tutorials - the best and the greatest!

Issue - State: open - Opened by vsoch almost 6 years ago - 15 comments

#80 - Fix swagger docs and add alias for v2 API

Issue - State: closed - Opened by KamalakerDadi almost 6 years ago - 10 comments
Labels: bug

#79 - neurosynth-data & decoding error

Issue - State: closed - Opened by weiliu1991 almost 6 years ago - 4 comments

#78 - cosmetic improvements

Pull Request - State: closed - Opened by tyarkoni about 6 years ago - 5 comments

#77 - Removed the use of deprecated scipy.stats.ss function

Pull Request - State: closed - Opened by ghost over 6 years ago - 2 comments

#76 - scipy.stats.ss deprecated

Issue - State: closed - Opened by cvklein over 6 years ago - 3 comments

#75 - Ensure download_abstracts Py3 compatibility.

Pull Request - State: closed - Opened by tsalo almost 7 years ago

#74 - Duecredit integration

Issue - State: closed - Opened by tsalo almost 7 years ago - 1 comment

#73 - updated image_type defaults

Pull Request - State: closed - Opened by ljchang about 7 years ago - 7 comments

#71 - Add topic modeling, now with Docker.

Pull Request - State: closed - Opened by tsalo about 7 years ago - 2 comments

#70 - travis is broken for python 2.7

Issue - State: open - Opened by adelavega over 7 years ago - 1 comment

#69 - Add topic modeling and abstract downloading functions.

Pull Request - State: closed - Opened by tsalo over 7 years ago - 6 comments

#68 - Add topic modeling to analysis.reduce

Issue - State: closed - Opened by tsalo over 7 years ago - 13 comments

#67 - PyPI out of sync with github release

Issue - State: closed - Opened by adelavega almost 8 years ago - 1 comment

#66 - "dataset.get_ids_by_features" in examples

Issue - State: open - Opened by wanirepo about 8 years ago - 6 comments

#65 - What should be the neurosynth's logo?

Issue - State: open - Opened by yarikoptic about 8 years ago - 4 comments

#64 - 4d support for image decoding

Issue - State: open - Opened by tyarkoni over 8 years ago
Labels: enhancement

#63 - Difference between code and website in number of studies around coordinates

Issue - State: closed - Opened by tsalo over 8 years ago - 3 comments
Labels: bug

#62 - Fix errors in add_mappables and delete_mappables.

Pull Request - State: closed - Opened by tsalo over 8 years ago - 2 comments

#61 - Add ability to filter IDs by abstract

Issue - State: open - Opened by tyarkoni over 8 years ago
Labels: enhancement

#60 - Missing dependency: ply

Issue - State: closed - Opened by vsoch over 8 years ago - 4 comments

#59 - DOI for releases

Issue - State: closed - Opened by vsoch over 8 years ago - 9 comments

#58 - performance improvements

Pull Request - State: closed - Opened by chrisgorgo over 8 years ago - 1 comment

#57 - this is snappier

Pull Request - State: closed - Opened by chrisgorgo over 8 years ago - 4 comments

#56 - Change the name to something more snappy

Issue - State: closed - Opened by chrisgorgo over 8 years ago - 13 comments

#55 - feature based clustering returns dense array

Issue - State: closed - Opened by adelavega almost 9 years ago - 2 comments

#54 - Clustering refactor

Pull Request - State: closed - Opened by tyarkoni almost 9 years ago - 4 comments

#53 - Some decoding pages point to wrong NeuroVault pages

Issue - State: closed - Opened by chrisgorgo about 9 years ago - 4 comments

#52 - "Default mode network" topic returns error

Issue - State: closed - Opened by chrisgorgo about 9 years ago - 6 comments

#51 - ply requirement

Issue - State: closed - Opened by fnielsen about 9 years ago - 1 comment

#50 - memory-map data arrays

Issue - State: closed - Opened by tyarkoni over 9 years ago - 1 comment
Labels: enhancement

#49 - Viewer Bug

Issue - State: closed - Opened by ljchang over 9 years ago - 1 comment

#48 - iPython Notebook Needs Update!

Issue - State: closed - Opened by vsoch over 9 years ago
Labels: bug

#47 - dataset.get_image_data() results in segmentation fault

Issue - State: closed - Opened by adelavega almost 10 years ago - 9 comments

#46 - just merge a detached (from any branch) 0.3.1 into master

Pull Request - State: closed - Opened by yarikoptic almost 10 years ago

#45 - website: outdated link to the paper

Issue - State: closed - Opened by yarikoptic almost 10 years ago - 2 comments

#44 - Can no longer load multiple feature maps on same viewer in new beta release

Issue - State: closed - Opened by ljchang almost 10 years ago - 1 comment

#43 - 4th dimensional Nifti image using masker.get_image

Issue - State: closed - Opened by adelavega about 10 years ago - 1 comment

#42 - IPython, not iPython

Pull Request - State: closed - Opened by mwaskom about 10 years ago - 2 comments

#41 - average_within_regions does not take Nifiti location string

Issue - State: closed - Opened by adelavega about 10 years ago - 3 comments

#40 - add masking option to decoder

Issue - State: closed - Opened by tyarkoni about 10 years ago - 1 comment
Labels: enhancement

#39 - fix voxel and study thresholding in cluster

Issue - State: closed - Opened by tyarkoni about 10 years ago
Labels: bug

#38 - distance_mask argument in Clusterer does nothing

Issue - State: closed - Opened by tyarkoni about 10 years ago

#37 - roi_mask flag is broken in cluster.py

Issue - State: closed - Opened by ljchang about 10 years ago
Labels: bug

#36 - get_ids_by_expression() not working anymore

Issue - State: closed - Opened by ljchang about 10 years ago - 1 comment
Labels: bug

#35 - database import

Issue - State: closed - Opened by jsd-lunar over 10 years ago - 13 comments

#34 - test case for get_features_by_ids

Pull Request - State: closed - Opened by stymy over 10 years ago - 2 comments

#33 - added get_features_by_ids

Pull Request - State: closed - Opened by stymy over 10 years ago - 2 comments

#32 - Bug in Decoder

Issue - State: closed - Opened by ljchang about 11 years ago - 2 comments

#31 - get_image_data missing ability to filter by voxels

Issue - State: closed - Opened by adelavega about 11 years ago - 1 comment

#30 - Discretized Values for Forward Inference Maps

Issue - State: closed - Opened by law826 about 11 years ago - 1 comment

#29 - Added data/ submodule with the dataset (from neurosynth-data)

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 1 comment

#27 - Move tests/ and resources/ under neurosynth

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 3 comments

#23 - Make neurosynth.__version__ available + fixed up editors modelines

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 1 comment

#22 - ENH: First draft of a testkraut-based regression test for a full analysis

Pull Request - State: closed - Opened by mih about 11 years ago - 1 comment

#21 - Various improvements

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 1 comment

#20 - Generalize last assertion -- mappables, volume, and r must all be set.

Pull Request - State: closed - Opened by ambimorph about 11 years ago - 1 comment

#19 - Assert that an image table has mappables.

Pull Request - State: closed - Opened by ambimorph about 11 years ago - 2 comments

#18 - ENH: allow to unmask multiple "volumes" in one call

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 1 comment

#17 - Fixed variable name typo; added corresponding unit test.

Pull Request - State: closed - Opened by ambimorph about 11 years ago - 1 comment

#16 - Fixed variable name typo.

Pull Request - State: closed - Opened by ambimorph about 11 years ago - 1 comment

#15 - "result" never defined

Issue - State: closed - Opened by chrisgorgo about 11 years ago - 3 comments

#14 - Propagate exceptions instead of exiting without error.

Pull Request - State: closed - Opened by chrisgorgo about 11 years ago

#13 - ENH: just tuning up debug messages a tiny bit (include module name, and sublevel to logger)

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 1 comment

#12 - DOC: Added "Code status" section pointing to travis and coversall

Pull Request - State: closed - Opened by yarikoptic about 11 years ago - 2 comments

#10 - Provide data/test_dataset.txt

Issue - State: closed - Opened by yarikoptic about 11 years ago - 2 comments

#9 - features.txt cannot be loaded

Issue - State: closed - Opened by mtakemiya about 11 years ago - 2 comments

#8 - Loading Dataset Fails with IndexError

Issue - State: closed - Opened by mtakemiya about 11 years ago - 1 comment

#7 - fixes to dataset and decode

Pull Request - State: closed - Opened by poldrack over 11 years ago

#6 - minor fixes

Pull Request - State: closed - Opened by poldrack over 11 years ago

#5 - need to add check for nibabel version

Issue - State: closed - Opened by poldrack over 11 years ago