Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neuronsimulator/nrn issues and pull requests

#2335 - xstatebutton, xcheckbox, xslider use data_handle.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 11 comments

#2334 - Oc::run(cmd,...) returns 0 on success 1 on error.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 9 comments

#2334 - Oc::run(cmd,...) returns 0 on success 1 on error.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 9 comments

#2333 - Some python data handle tests

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 7 comments

#2332 - GHA NEURON CI: final check

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 3 comments

#2331 - nrn_add_external_project: find_path with NO_DEFAULT_PATH

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 3 comments

#2330 - Officially bump to gcc9 minimum

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 5 comments

#2329 - Drop support for old units in NEURON 9.0?

Issue - State: open - Opened by alexsavulescu over 1 year ago

#2329 - Drop support for old units in NEURON 9.0?

Issue - State: open - Opened by alexsavulescu over 1 year ago

#2328 - -DNRN_COVERAGE_FILES="..." not working on Apple Silicon

Issue - State: closed - Opened by nrnhines over 1 year ago

#2327 - coverage: fix relative paths of flex/bison files, use targets in CI

Pull Request - State: closed - Opened by olupton over 1 year ago - 6 comments

#2327 - coverage: fix relative paths of flex/bison files, use targets in CI

Pull Request - State: closed - Opened by olupton over 1 year ago - 6 comments

#2326 - Unable to rebuild from scratch with cmake on macOS 13.3

Issue - State: closed - Opened by cstricker over 1 year ago - 4 comments
Labels: bug

#2325 - Exclude bison and lex generated files from -DNRN_ENABLE_COVERAGE

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 6 comments

#2325 - Exclude bison and lex generated files from -DNRN_ENABLE_COVERAGE

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 6 comments

#2324 - Documentation incorrect: matrix.x works in Python

Issue - State: open - Opened by ramcdougal over 1 year ago
Labels: documentation

#2324 - Documentation incorrect: matrix.x works in Python

Issue - State: open - Opened by ramcdougal over 1 year ago
Labels: documentation

#2323 - Cosmetic fixes from #2317

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2323 - Cosmetic fixes from #2317

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2322 - docs: `myst-parser` replaces `recommonmark` & sphinx 6 hocdomain

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 5 comments

#2322 - docs: `myst-parser` replaces `recommonmark` & sphinx 6 hocdomain

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 5 comments

#2321 - Move vec.size() to len(vec)

Pull Request - State: open - Opened by alkino over 1 year ago - 4 comments

#2321 - Move vec.size() to len(vec)

Pull Request - State: closed - Opened by alkino over 1 year ago - 4 comments

#2320 - Bugfix: Update rxd currents when the model structure is changed.

Pull Request - State: closed - Opened by adamjhn over 1 year ago - 9 comments
Labels: rxd

#2319 - Update link to cmake build options in install_instructions.md

Pull Request - State: closed - Opened by cccohen over 1 year ago - 2 comments

#2318 - nrn_spike_exchange needed before CoreNEURON started if t reached by fadvance.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 7 comments

#2317 - Update Python library handling

Pull Request - State: closed - Opened by olupton over 1 year ago - 38 comments

#2316 - [UNITS] Enable dynamic selection between legacy and dynamic units in CoreNEURON

Issue - State: closed - Opened by iomaganaris over 1 year ago - 1 comment
Labels: enhancement, units

#2315 - Always use %a to print unit computation

Pull Request - State: closed - Opened by alkino over 1 year ago - 16 comments

#2315 - Always use %a to print unit computation

Pull Request - State: closed - Opened by alkino over 1 year ago - 16 comments

#2313 - Try and collect more Python coverage

Pull Request - State: open - Opened by olupton over 1 year ago - 35 comments

#2313 - Try and collect more Python coverage

Pull Request - State: closed - Opened by olupton over 1 year ago - 36 comments

#2312 - Extend "pdata" caching when using new SoA data structures

Issue - State: open - Opened by olupton over 1 year ago
Labels: enhancement, proposal, improvement, dev

#2311 - Cope gracefully with missing py-pytest-cov

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2311 - Cope gracefully with missing py-pytest-cov

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2310 - Bug fix for detecting ION channel type in LoadBalance

Pull Request - State: closed - Opened by pramodk over 1 year ago - 7 comments

#2310 - Bug fix for detecting ION channel type in LoadBalance

Pull Request - State: closed - Opened by pramodk over 1 year ago - 7 comments

#2309 - Remove SUNDIALS_XXX_PRECISION

Pull Request - State: closed - Opened by alkino over 1 year ago - 8 comments

#2308 - Add test using mcna.mod

Pull Request - State: closed - Opened by olupton over 1 year ago - 12 comments

#2307 - Update rxd.py

Pull Request - State: closed - Opened by TracyL5982 over 1 year ago

#2306 - Test changes to the GitLab log uploader

Pull Request - State: closed - Opened by olupton over 1 year ago - 12 comments

#2305 - Migration c to cpp in sparse13

Pull Request - State: closed - Opened by WeinaJi over 1 year ago - 12 comments

#2305 - Migration c to cpp in sparse13

Pull Request - State: closed - Opened by WeinaJi over 1 year ago - 12 comments

#2304 - Verify python datahandles preserved under addition/removal of cells.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 15 comments

#2303 - Windows CI: keep only GH Actions & publish nighthly installer

Issue - State: closed - Opened by alexsavulescu over 1 year ago
Labels: CI, windows

#2303 - Windows CI: keep only GH Actions & publish nighthly installer

Issue - State: closed - Opened by alexsavulescu over 1 year ago
Labels: CI, windows

#2302 - drop NRN_USEFILEWRAP macro

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 6 comments

#2302 - drop NRN_USEFILEWRAP macro

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 6 comments

#2301 - doc system updates: links and testing

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 5 comments
Labels: documentation

#2301 - doc system updates: links and testing

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 5 comments
Labels: documentation

#2300 - Model cleanup before simulation ("freeing Nodes")

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, coreneuron

#2299 - Improved GUI (gui2 under development)

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, dev, gui

#2298 - Pointer documentation should be clearer

Issue - State: open - Opened by ramcdougal over 1 year ago
Labels: enhancement, documentation

#2297 - Refactoring of GPU/accelerator code to simplify build and binary distributions

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: coreneuron, refactoring, gpu

#2296 - Analysis of GPU with OpenMP and GCC/LLVM

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: informational

#2295 - Analysis of GCC, Intel, OneAPI compiler performance

Issue - State: closed - Opened by alexsavulescu over 1 year ago - 2 comments
Labels: informational, intel

#2295 - Analysis of GCC, Intel, OneAPI compiler performance

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: informational, intel

#2294 - Improve return error codes

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, coreneuron, dev

#2294 - Improve return error codes

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, coreneuron, dev

#2293 - Windows native build

Issue - State: open - Opened by alexsavulescu over 1 year ago - 28 comments
Labels: windows, dev

#2292 - Improve reference data management + add more value-sensitive tests

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, testing, dev

#2291 - Improve and automate "prcellstate" for debugging and validation

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, testing, dev

#2291 - Improve and automate "prcellstate" for debugging and validation

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, testing, dev

#2290 - Unit tests framework

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, testing

#2289 - Align + simplify nocmodl/NMODL by changing nocmodl

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: enhancement, dev, nmodl

#2288 - Make NMODL default transpiler for CoreNEURON and drop mod2c

Issue - State: open - Opened by alexsavulescu over 1 year ago - 2 comments
Labels: coreneuron, improvement, dev, nmodl

#2288 - Make NMODL default transpiler for CoreNEURON and drop mod2c

Issue - State: open - Opened by alexsavulescu over 1 year ago - 2 comments
Labels: coreneuron, improvement, dev, nmodl

#2285 - Single MPI Dynamic implementation for NEURON/CoreNEURON

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: coreneuron, improvement, dev

#2280 - 9.0 Alpha

Issue - State: closed - Opened by alexsavulescu over 1 year ago - 1 comment

#2280 - 9.0 Alpha

Issue - State: open - Opened by alexsavulescu over 1 year ago

#2276 - Vectors should support slicing

Issue - State: closed - Opened by ramcdougal over 1 year ago - 2 comments
Labels: enhancement, python

#2270 - 3D reaction null pointer exception on M1 macs with framework Python

Issue - State: closed - Opened by ramcdougal over 1 year ago - 1 comment
Labels: bug, rxd, macOS

#2267 - win_build_cmake.sh: call cmake install directly

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 8 comments

#2260 - multi gridding tests

Pull Request - State: closed - Opened by TracyL5982 over 1 year ago - 3 comments
Labels: rxd

#2259 - Support Intel oneAPI compilers

Pull Request - State: closed - Opened by olupton over 1 year ago - 27 comments

#2259 - Support Intel oneAPI compilers

Pull Request - State: closed - Opened by olupton over 1 year ago - 27 comments

#2255 - windows 11 fix for nrniv -python

Pull Request - State: open - Opened by nrnhines over 1 year ago - 39 comments

#2253 - Create standalone random123 unit test

Issue - State: open - Opened by iomaganaris over 1 year ago
Labels: enhancement, testing, good for beginners, coreneuron, dev, gpu, hackathon

#2248 - Removal of nrncore_callbacks after CoreNEURON repo merge

Issue - State: open - Opened by pramodk over 1 year ago - 1 comment
Labels: dev

#2248 - Removal of nrncore_callbacks after CoreNEURON repo merge

Issue - State: open - Opened by pramodk over 1 year ago - 1 comment
Labels: dev

#2247 - Remove support of mod2c

Pull Request - State: open - Opened by alkino over 1 year ago - 48 comments

#2246 - Add names for values of BEFORE/AFTER blocks

Pull Request - State: closed - Opened by alkino over 1 year ago - 13 comments

#2246 - Add names for values of BEFORE/AFTER blocks

Pull Request - State: closed - Opened by alkino over 1 year ago - 13 comments

#2243 - Remove support of Reporting lib

Pull Request - State: closed - Opened by alkino over 1 year ago - 21 comments

#2243 - Remove support of Reporting lib

Pull Request - State: closed - Opened by alkino over 1 year ago - 21 comments

#2238 - use `setuptools_scm` for versioning

Issue - State: open - Opened by alexsavulescu almost 2 years ago
Labels: enhancement, python, cmake, wheel

#2234 - NEURON uses reserved identifiers & doesn't define its API

Issue - State: open - Opened by olupton almost 2 years ago - 4 comments
Labels: bug, proposal, improvement, wheel, dev, nmodl, api, refactoring

#2232 - Compilation issue with intel-one-api compiler toolchain (2021.4.0)

Issue - State: closed - Opened by pramodk almost 2 years ago - 2 comments
Labels: bug, building, intel

#2228 - Python packaging after distutils: `setuptools.build_meta` ?

Issue - State: open - Opened by alexsavulescu almost 2 years ago - 1 comment
Labels: enhancement, question, python, wheel

#2220 - Using new SoA data structures with CoreNEURON (and avoid memory duplication)

Issue - State: closed - Opened by pramodk almost 2 years ago - 3 comments
Labels: dev

#2212 - removed unused imports, typo fixes, misc cleanup

Pull Request - State: closed - Opened by ramcdougal almost 2 years ago - 7 comments

#2204 - Remove usage of IVOS/regexp

Pull Request - State: closed - Opened by alkino almost 2 years ago - 63 comments

#2154 - try nvhpc 22.11 with cuda 11.0

Pull Request - State: open - Opened by pramodk almost 2 years ago - 2 comments

#2140 - manylinux2014: GCC 10 is now mainstreamed

Pull Request - State: open - Opened by alexsavulescu almost 2 years ago - 10 comments

#2118 - Support Online LFP calculation

Pull Request - State: closed - Opened by jorblancoa almost 2 years ago - 25 comments

#2118 - Support Online LFP calculation

Pull Request - State: closed - Opened by jorblancoa almost 2 years ago - 25 comments

#2104 - Cornu/less string

Pull Request - State: closed - Opened by alkino almost 2 years ago - 2 comments