Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neuronsimulator/nrn issues and pull requests

#2445 - Print memory usage of SoA containers.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 30 comments

#2444 - gitignore these automatically generated files.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 6 comments

#2443 - rxd and MUSIC should build with Cython 3.0

Issue - State: closed - Opened by ramcdougal over 1 year ago - 1 comment
Labels: bug, duplicate, rxd, cython

#2442 - bump documentation timeout to 25 minutes

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 6 comments

#2441 - channel-benchmark is now nmodlbench on github

Pull Request - State: closed - Opened by heerener over 1 year ago - 3 comments

#2440 - Transfer rxd documentation to the new site

Pull Request - State: open - Opened by sgamiye over 1 year ago - 14 comments

#2439 - Implement `neuron::model()` as a singleton.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 3 comments

#2438 - Remove unused options

Pull Request - State: closed - Opened by alkino over 1 year ago - 9 comments

#2437 - Improve data structure related code documentation.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 7 comments

#2436 - be more specific about supported cython version

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 3 comments

#2435 - Cython 3.0 support

Issue - State: closed - Opened by alexsavulescu over 1 year ago - 7 comments
Labels: building, dev, rxd, cython

#2434 - avoid snprintf warning

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 10 comments

#2433 - Pin cython to < 3. Workaround for #2430

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 9 comments

#2432 - Rellocate subworld mpi variable inside nrnmpi only

Pull Request - State: closed - Opened by alkino over 1 year ago - 13 comments

#2431 - 2to3 on python code

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 2 comments

#2430 - CI & Build issues with release of Cython 3.0

Issue - State: closed - Opened by pramodk over 1 year ago
Labels: bug, rxd, cython

#2429 - A bit of improvement in dynamic mpi library loading in coreneuron

Pull Request - State: closed - Opened by pramodk over 1 year ago - 12 comments

#2428 - Document extra solution for MacOS wheels building.

Pull Request - State: closed - Opened by heerener over 1 year ago - 3 comments

#2427 - Silent install on Windows

Issue - State: closed - Opened by tmaria2 over 1 year ago - 5 comments
Labels: enhancement

#2426 - nrn_random_play does not work well with multiple threads

Issue - State: open - Opened by olupton over 1 year ago
Labels: bug

#2425 - docs homepage now linking to new ModelDB

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 9 comments
Labels: documentation

#2424 - Fixes numpy import error in model view when user is not using rxd; closes #2367

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 14 comments

#2423 - fixes numpy import error when user is not using rxd; closes #2367

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 2 comments

#2422 - Catch2 for CoreNEURON unit tests

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 6 comments

#2421 - MPI: put in netpar variables that should not be global

Pull Request - State: closed - Opened by alkino over 1 year ago - 13 comments

#2420 - CoreNEURON unit tests logic: if we require them, require them

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 12 comments

#2418 - Report memory usage statistics, including the bookkeeping overhead

Issue - State: closed - Opened by iomaganaris over 1 year ago
Labels: enhancement

#2417 - Reduce indirection when MOD files use `diam` and `area`

Issue - State: closed - Opened by iomaganaris over 1 year ago - 3 comments
Labels: enhancement, improvement, dev

#2416 - Matplotlib 3.6 PlotShape Compatibility

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 2 comments

#2415 - Some extra documentation on building wheels on OSX

Pull Request - State: closed - Opened by heerener over 1 year ago - 5 comments

#2414 - CI: bump coverage TO to 60min

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 3 comments

#2413 - retrofit: macOS arm64 wheels: delocate workaround (#1897)

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 5 comments

#2412 - Update plotshapeclass.rst

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 12 comments

#2411 - rxd documentation not fully transferred to new site

Issue - State: open - Opened by ramcdougal over 1 year ago
Labels: bug

#2410 - RangeVarPlot rxd fix

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 9 comments

#2409 - fixed a "click here" that needed a link

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 5 comments
Labels: documentation

#2408 - docs/guide/units_tutorial.rst duplicative of docs/guide/units.rst

Issue - State: open - Opened by ramcdougal over 1 year ago
Labels: documentation, good for beginners

#2407 - different paths containing same mechanisms

Issue - State: open - Opened by anilbey over 1 year ago - 3 comments

#2405 - Added documentation for execution workflows

Pull Request - State: closed - Opened by iomaganaris over 1 year ago - 9 comments

#2403 - `h.MechanismType(0).selected("some_string")` causes double free

Issue - State: open - Opened by Helveg over 1 year ago - 1 comment
Labels: better-error-handling-needed

#2402 - Internal regex implementation overflows buffers

Issue - State: open - Opened by olupton over 1 year ago - 1 comment
Labels: bug

#2401 - sphinx documentation search should put Python before HOC

Issue - State: open - Opened by ramcdougal over 1 year ago - 1 comment
Labels: documentation

#2400 - MorphIO API Skeleton

Pull Request - State: open - Opened by alexsavulescu over 1 year ago - 39 comments

#2399 - Wheels don't support backspace/delete keys in interactive usage with version >= 8.1.0

Issue - State: closed - Opened by pramodk over 1 year ago - 3 comments
Labels: bug, wheel

#2398 - drop windows nightly installer

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 3 comments

#2396 - Fix typos

Pull Request - State: closed - Opened by pitmonticone over 1 year ago - 1 comment

#2395 - Auto-apply formatting

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 13 comments

#2394 - One single Windows CI

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 5 comments

#2391 - Build src/gnu as its own library

Pull Request - State: closed - Opened by alkino over 1 year ago - 16 comments

#2389 - Clean headers dependencies in nrn

Pull Request - State: closed - Opened by alkino over 1 year ago - 18 comments

#2388 - Plot adjustments

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 4 comments

#2386 - plotshape issues with Python on mac

Issue - State: closed - Opened by ramcdougal over 1 year ago - 12 comments
Labels: bug

#2382 - Voltage clamp delays and a ON/OFF switch

Issue - State: closed - Opened by SteMasoli over 1 year ago
Labels: enhancement

#2379 - docs: several topics

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 30 comments

#2375 - New mpi way

Pull Request - State: open - Opened by alkino over 1 year ago - 11 comments

#2370 - ModelView crashes with channel builder models, e.g. 152028

Issue - State: closed - Opened by ramcdougal over 1 year ago
Labels: bug

#2369 - For adding only nodes to nodelist. Please check before merging.

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 10 comments
Labels: rxd

#2367 - rxd should not be imported unless it's at the request of the user

Issue - State: closed - Opened by ramcdougal over 1 year ago
Labels: bug, rxd

#2366 - Documentation: search is broken

Issue - State: open - Opened by alexsavulescu over 1 year ago
Labels: bug, documentation

#2365 - Add Robert's API tests to CTest

Pull Request - State: closed - Opened by olupton over 1 year ago - 5 comments

#2364 - remove any examples using crxd

Issue - State: closed - Opened by ramcdougal over 1 year ago
Labels: documentation, rxd

#2363 - Graph comparisons of float32 can differ on Darwin in last digit.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 3 comments

#2362 - switched some links to readthedocs

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 7 comments

#2361 - no hg on bitbucket or at yale

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 3 comments

#2360 - Add SEClamp to LFP calculation

Pull Request - State: closed - Opened by jorblancoa over 1 year ago - 10 comments

#2359 - missing neuron-nightly for macOS M1/M2

Issue - State: open - Opened by ramcdougal over 1 year ago - 6 comments
Labels: enhancement, CI, dev, macOS

#2358 - master built on mac segfaults on "from neuron import h" in anaconda python but not in nrniv -python

Issue - State: open - Opened by ramcdougal over 1 year ago - 12 comments
Labels: bug, dev, macOS

#2357 - formalization of an API

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 103 comments

#2356 - PlotShape with plotly should support diams, specifying fixed width

Issue - State: closed - Opened by ramcdougal over 1 year ago - 2 comments
Labels: enhancement

#2356 - PlotShape with plotly should support diams, specifying fixed width

Issue - State: closed - Opened by ramcdougal over 1 year ago - 2 comments
Labels: enhancement

#2355 - CoreNeuron follow nrn for MPI

Pull Request - State: closed - Opened by alkino over 1 year ago - 14 comments

#2354 - Documentation should link to runnable example of PlotShape.mark

Issue - State: open - Opened by ramcdougal over 1 year ago - 2 comments
Labels: documentation

#2353 - Update ball-and-stick-4 to drive MPI tests directly from Jupyter

Pull Request - State: closed - Opened by olupton over 1 year ago - 7 comments

#2352 - mod file compilation throws error of not finding "hocdec.h"

Issue - State: closed - Opened by cstricker over 1 year ago - 2 comments
Labels: bug

#2351 - Thread balance

Pull Request - State: open - Opened by nrnhines over 1 year ago - 7 comments

#2351 - Thread balance

Pull Request - State: open - Opened by nrnhines over 1 year ago - 7 comments

#2350 - Findnmodl.cmake: look for nmodl.hpp not nmodl/fast_math.hpp

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2349 - CircleCI: upgrade pip before twine upload

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago - 4 comments

#2348 - Add missing include; GCC13 is more pedantic

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#2347 - Assessment of thread load balance

Issue - State: open - Opened by nrnhines over 1 year ago - 1 comment
Labels: enhancement

#2346 - Building NEURON on the BBP windows server

Issue - State: open - Opened by nrnhines over 1 year ago - 1 comment

#2345 - Eliminate conditional MAC as it is unused.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 7 comments

#2344 - replaced out array with meaningful names

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 3 comments
Labels: documentation

#2344 - replaced out array with meaningful names

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 3 comments
Labels: documentation

#2343 - Having more python types in addition to `hoc.HocObject`

Issue - State: closed - Opened by anilbey over 1 year ago - 3 comments
Labels: enhancement

#2343 - Having more python types in addition to `hoc.HocObject`

Issue - State: open - Opened by anilbey over 1 year ago - 2 comments
Labels: enhancement

#2342 - Update nmodl submodule to latest tag

Pull Request - State: closed - Opened by iomaganaris over 1 year ago - 5 comments

#2342 - Update nmodl submodule to latest tag

Pull Request - State: closed - Opened by iomaganaris over 1 year ago - 5 comments

#2341 - docker: Download and build python for nmodl

Pull Request - State: open - Opened by alkino over 1 year ago - 16 comments

#2341 - docker: Download and build python for nmodl

Pull Request - State: open - Opened by alkino over 1 year ago - 9 comments

#2340 - Can the MAC macro be removed?

Issue - State: closed - Opened by olupton over 1 year ago
Labels: question

#2340 - Can the MAC macro be removed?

Issue - State: closed - Opened by olupton over 1 year ago
Labels: question

#2339 - NEURONMainMenu/File/Quit when launch from python hangs.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 3 comments

#2338 - When launched from Python, NEURONMainMenu/File/Quit hangs the GUI thread

Issue - State: closed - Opened by nrnhines over 1 year ago - 5 comments

#2337 - Improve exception handling

Pull Request - State: closed - Opened by olupton over 1 year ago - 18 comments

#2336 - Fix ModelDB CI diffs introduced by #2317

Pull Request - State: closed - Opened by olupton over 1 year ago - 11 comments

#2336 - Fix ModelDB CI diffs introduced by #2317

Pull Request - State: closed - Opened by olupton over 1 year ago - 11 comments

#2335 - xstatebutton, xcheckbox, xslider use data_handle.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 11 comments