neuronsimulator/nrn issues and pull requests

#2534 - Add and use algorithms for managing iterable

Pull Request - State: closed - Opened by alkino about 1 year ago - 18 comments
Labels: hackron2023

#2533 - Windows CI silent failure to compile.

Issue - State: open - Opened by 1uc about 1 year ago - 1 comment
Labels: bug, CI

#2532 - Use `char const *` in `oc_popen`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 6 comments
Labels: hackron2023

#2531 - Draft: Update `setuptools` for Window CI.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 4 comments

#2530 - typo when setting NRN_COVERAGE_FLAGS

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 5 comments

#2529 - Update iv (HAVE_SYS_SELECT_H does not get defined for Mac builds)

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 9 comments
Labels: hackron2023

#2528 - Unable to compile on macOS 13.6 - after install of command line tools 15

Issue - State: closed - Opened by cstricker about 1 year ago - 3 comments
Labels: bug

#2527 - Replace Observer pattern by signal

Pull Request - State: closed - Opened by alkino about 1 year ago - 1 comment

#2526 - Script for OSX wheels building

Pull Request - State: closed - Opened by heerener about 1 year ago - 6 comments
Labels: hackron2023

#2525 - Improve CoreNEURON file transfer mode

Pull Request - State: open - Opened by sergiorg-hpc about 1 year ago - 8 comments
Labels: hackron2023

#2524 - Fix use of SaveState.restore with FInitializeHandler

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 15 comments
Labels: hackron2023

#2523 - Update NMODL submodule to latest master

Pull Request - State: closed - Opened by iomaganaris about 1 year ago - 3 comments

#2522 - Test and try: live-debug-win

Pull Request - State: closed - Opened by alkino about 1 year ago - 12 comments

#2521 - Add and use algorithm for managing iterable

Pull Request - State: closed - Opened by alkino about 1 year ago - 11 comments

#2520 - Dragging setup.py into the 21st century

Pull Request - State: open - Opened by heerener about 1 year ago - 4 comments

#2519 - Mac M1 compiler

Issue - State: closed - Opened by mbreyt about 1 year ago - 8 comments
Labels: bug

#2518 - Window CI fails late.

Issue - State: open - Opened by 1uc about 1 year ago
Labels: bug, CI

#2517 - SaveState in 9.0a

Issue - State: closed - Opened by adamjhn about 1 year ago - 5 comments
Labels: bug

#2516 - Installer links and changelog for 8.2.3 (#2502)

Pull Request - State: closed - Opened by pramodk about 1 year ago - 5 comments

#2515 - Add NEURON_WHEEL_VERSION parameter

Pull Request - State: closed - Opened by heerener about 1 year ago

#2514 - Remove `declarePtrList` and `declareList`

Pull Request - State: closed - Opened by alkino about 1 year ago - 23 comments

#2513 - Modernize `NULL`.

Issue - State: open - Opened by 1uc about 1 year ago - 1 comment
Labels: enhancement

#2512 - Modernize memory management in RxD.

Issue - State: open - Opened by 1uc about 1 year ago - 2 comments
Labels: enhancement

#2511 - Fresh compilation on M1 rxd tests fails.

Issue - State: open - Opened by rgourdine about 1 year ago - 3 comments
Labels: bug

#2510 - Neuron M1 compile instructions have hardcoded python version requirements.

Issue - State: open - Opened by rgourdine about 1 year ago
Labels: documentation, building, macOS

#2509 - Fix `Sprintf` of data handle.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 16 comments
Labels: hackron2023

#2508 - Malloc -> new[] in `grids.?pp`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 4 comments

#2507 - Fix missing `return`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 3 comments

#2506 - Fix mismatching malloc & pointer cast.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 3 comments

#2505 - NEURON 8.2.3 patch release

Issue - State: closed - Opened by heerener about 1 year ago
Labels: release

#2504 - Fixed mod file array variable assignment (seg.mech.array[i] = x)

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 3 comments

#2503 - Improve file mode execution of CoreNEURON

Pull Request - State: closed - Opened by iomaganaris about 1 year ago - 11 comments

#2502 - 8.2.3 installer links and changelog

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 6 comments

#2501 - Increase CI timeout limit to 75 minutes.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 4 comments

#2501 - Increase CI timeout limit to 75 minutes.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 4 comments

#2500 - Update coding-conventions to use `copy_if_different`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2500 - Update coding-conventions to use `copy_if_different`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2499 - Reference counted stable identifiers.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 36 comments
Labels: hackron2023

#2499 - Draft: Reference counted stable identifiers.

Pull Request - State: open - Opened by 1uc about 1 year ago - 2 comments

#2498 - Add more REQUIRE empty checks.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 3 comments

#2497 - Remove `non_owning_*::get_raw_pointer()`.

Pull Request - State: open - Opened by 1uc about 1 year ago - 4 comments

#2497 - Remove `non_owning_*::get_raw_pointer()`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 8 comments

#2496 - Null check in `operator<<(std::ostream, Node)`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2496 - Null check in `operator<<(std::ostream, Node)`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2495 - Build system failure related to neurondemo.

Issue - State: open - Opened by 1uc about 1 year ago
Labels: bug

#2495 - Build system failure related to neurondemo.

Issue - State: open - Opened by 1uc about 1 year ago
Labels: bug

#2494 - Issue while using wheel with coreneuron+nmodl and a MOD file requiring sympy

Issue - State: open - Opened by pramodk about 1 year ago
Labels: bug, coreneuron, wheel

#2494 - Issue while using wheel with coreneuron+nmodl and a MOD file requiring sympy

Issue - State: open - Opened by pramodk about 1 year ago
Labels: bug, coreneuron, wheel

#2493 - Cornu/templated matrix

Pull Request - State: open - Opened by alkino about 1 year ago - 1 comment

#2493 - Cornu/templated matrix

Pull Request - State: closed - Opened by alkino about 1 year ago - 1 comment

#2492 - Remove OcMatrix::temp_objvar

Pull Request - State: closed - Opened by alkino about 1 year ago - 7 comments

#2492 - Remove OcMatrix::temp_objvar

Pull Request - State: open - Opened by alkino about 1 year ago - 3 comments

#2491 - Soma contour centroid oriented so 1 end is largest positive direction.

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 26 comments

#2491 - Soma contour centroid oriented so 1 end is largest positive direction.

Pull Request - State: open - Opened by nrnhines about 1 year ago - 11 comments

#2490 - Hines/build 8.2.3

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 4 comments

#2490 - Hines/build 8.2.3

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 4 comments

#2489 - kschan: use eigen instead of sparse13

Pull Request - State: open - Opened by alkino about 1 year ago - 46 comments

#2489 - kschan: use eigen instead of sparse13

Pull Request - State: open - Opened by alkino about 1 year ago - 46 comments

#2488 - Bugfix: Allow result of python call from rxd include flux to be free'd.

Pull Request - State: closed - Opened by adamjhn about 1 year ago - 3 comments
Labels: bug, rxd

#2487 - Hines/build 8.2.2

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 2 comments

#2486 - Hines/fix 8.2.2

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 27 comments

#2485 - The test coverage_tests::cover_tests keeps timing out.

Issue - State: open - Opened by 1uc about 1 year ago
Labels: bug, CI

#2484 - Fixes linux wheel backspace by upgrading ncurses-6.2 to 6.4

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 23 comments

#2483 - No more CopyString when Interviews is not used

Pull Request - State: closed - Opened by alkino about 1 year ago - 8 comments

#2482 - Fix copying files.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 6 comments

#2480 - Update CodeCov to be informational.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 7 comments

#2479 - Call `Instrumentor::{init,finalize}_profile`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2478 - Fix LIKWID related build instructions.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 8 comments

#2477 - Example for `data_handle_valid<T>(T*)`.

Pull Request - State: open - Opened by 1uc about 1 year ago - 3 comments

#2476 - Link `libcorenrnmpi_{mpi_name}.so` with the corresponding NEURON MPI library with MPI dynamic

Pull Request - State: closed - Opened by iomaganaris about 1 year ago - 5 comments

#2475 - Allow segment.mechanism.func(args)

Pull Request - State: closed - Opened by nrnhines about 1 year ago - 22 comments

#2474 - Add unit tests for OcFullMatrix

Pull Request - State: closed - Opened by alkino about 1 year ago - 26 comments

#2473 - generic_data_handle: tweak tests

Pull Request - State: closed - Opened by olupton about 1 year ago - 5 comments

#2472 - Improve error handling in NEURON's HOC/Python stack machine

Issue - State: open - Opened by olupton about 1 year ago
Labels: enhancement

#2471 - Improvements to coverage collection and test organisation

Issue - State: open - Opened by olupton about 1 year ago
Labels: enhancement, testing, python, coreneuron, improvement, cmake, dev, refactoring, coverage

#2470 - Replace Meschach by eigen

Pull Request - State: closed - Opened by alkino about 1 year ago - 67 comments
Labels: refactoring

#2469 - test_fornetcon.py should test multiple MPI ranks and alternating NEURON - CoreNEURON execution

Issue - State: open - Opened by olupton about 1 year ago
Labels: enhancement, testing, good for beginners, coreneuron, proposal, improvement

#2468 - Update init.py to catch attempts to plot species instead of speci…

Pull Request - State: closed - Opened by sgamiye about 1 year ago - 19 comments

#2467 - Refactor `generic_data_handle`.

Pull Request - State: closed - Opened by 1uc about 1 year ago - 5 comments

#2466 - Example of how `Datum` works with `generic_data_handle`.

Pull Request - State: open - Opened by 1uc over 1 year ago - 14 comments

#2465 - Unified all mpi assert mechanisms

Pull Request - State: closed - Opened by alkino over 1 year ago - 29 comments

#2464 - Today HAVE_STL is always true

Pull Request - State: closed - Opened by alkino over 1 year ago - 5 comments

#2463 - Modernize graph.cpp to use data_handles.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 6 comments

#2462 - Replace Meschach/sparse13 libraires with Eigen

Issue - State: open - Opened by alkino over 1 year ago
Labels: enhancement

#2461 - removed code commented out years ago

Pull Request - State: closed - Opened by ramcdougal over 1 year ago - 6 comments
Labels: rxd

#2460 - Avoid segfault if user fails to call setdata before a mech FUNCTION.

Pull Request - State: closed - Opened by nrnhines over 1 year ago - 41 comments

#2459 - nrnmpi_load: remove useless parameter is_python

Pull Request - State: closed - Opened by alkino over 1 year ago - 5 comments

#2458 - Another problem with datahandle

Issue - State: open - Opened by nrnhines over 1 year ago - 13 comments
Labels: bug

#2457 - Problem with datahandle

Issue - State: closed - Opened by nrnhines over 1 year ago - 9 comments
Labels: bug

#2456 - Fix leak in `write_nrnthread`.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 9 comments

#2455 - Improve memory release

Pull Request - State: closed - Opened by 1uc over 1 year ago - 12 comments

#2454 - Handle dynamic vs. static MPI only inside nrnmpi

Pull Request - State: closed - Opened by alkino over 1 year ago - 15 comments

#2453 - Only perform a single sort when in local_spikevec_sort

Pull Request - State: closed - Opened by mgeplf over 1 year ago - 7 comments

#2452 - RxDException no longer hidden

Pull Request - State: closed - Opened by caozhiyuan0424 over 1 year ago - 3 comments
Labels: rxd

#2451 - Compile sparse13 as its own static library

Pull Request - State: closed - Opened by alkino over 1 year ago - 26 comments

#2450 - Use nullptr instead of nil

Pull Request - State: closed - Opened by alkino over 1 year ago - 17 comments

#2449 - Overview of datastructures tags types.

Pull Request - State: closed - Opened by 1uc over 1 year ago - 3 comments

#2448 - Remove obsolete fmenu functions

Pull Request - State: closed - Opened by alkino over 1 year ago - 5 comments

#2447 - Update plotshapeclass.rst to include rxd.Species example

Pull Request - State: closed - Opened by sgamiye over 1 year ago - 4 comments

#2446 - GPU wheel support

Issue - State: open - Opened by olupton over 1 year ago
Labels: enhancement, python, coreneuron, improvement, building, wheel, gpu

GitHub / neuronsimulator/nrn issues and pull requests