Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neuronsimulator/nrn issues and pull requests

#3080 - Mark RXD test as skip on Ubuntu 22+

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 8 comments

#3079 - remove outdated comment

Pull Request - State: closed - Opened by ramcdougal 2 months ago - 3 comments

#3078 - Add printf-debugging output for RXD tests.

Pull Request - State: closed - Opened by 1uc 2 months ago - 3 comments

#3077 - Suppress unsigned-integer-overflow for fmt.

Pull Request - State: closed - Opened by 1uc 2 months ago - 3 comments

#3076 - Add a Logger class

Pull Request - State: open - Opened by alkino 2 months ago - 24 comments

#3075 - Don't look for KSChan channel __doc__ string with ModelView.

Pull Request - State: closed - Opened by nrnhines 2 months ago - 6 comments

#3074 - Use fmt as backend for Printf/Fprintf

Pull Request - State: closed - Opened by alkino 2 months ago - 5 comments

#3073 - Use Printf/Fprintf instead of std::cout, std::cerr

Pull Request - State: closed - Opened by alkino 2 months ago - 6 comments

#3072 - Update `fmt@11`.

Pull Request - State: closed - Opened by 1uc 2 months ago - 9 comments

#3071 - Explore CI issues.

Pull Request - State: closed - Opened by nrnhines 2 months ago - 4 comments

#3070 - fix the -Wall warnings for containers

Pull Request - State: closed - Opened by nrnhines 2 months ago - 7 comments

#3069 - -Wall warnings for the container files

Issue - State: closed - Opened by nrnhines 2 months ago - 2 comments

#3068 - Run CI for NMODLs Newton error estimate PR.

Pull Request - State: closed - Opened by 1uc 3 months ago - 9 comments

#3067 - Use vendored NMODL version as default during CI.

Pull Request - State: closed - Opened by 1uc 3 months ago - 5 comments

#3066 - Set the voltage from `_setdata`.

Pull Request - State: closed - Opened by 1uc 3 months ago - 11 comments

#3065 - Redef fix

Pull Request - State: closed - Opened by mgeplf 3 months ago - 22 comments

#3064 - Remove unused `cvodematsol`

Pull Request - State: open - Opened by JCGoran 3 months ago - 4 comments

#3063 - Review supposedly dead code in RxD.

Issue - State: open - Opened by 1uc 3 months ago

#3062 - Automatic formatting fixup breaks CI.

Issue - State: open - Opened by 1uc 3 months ago - 1 comment
Labels: CI

#3061 - Make notebooks work with `bokeh>=3` and remove `bokeh<3` pin

Pull Request - State: closed - Opened by kbvw 3 months ago - 24 comments

#3060 - Remove dead code in `crout`

Pull Request - State: open - Opened by JCGoran 3 months ago - 5 comments

#3059 - Wrong voltage in direct function calls for non-threadsafe MOD files.

Issue - State: closed - Opened by 1uc 3 months ago - 3 comments
Labels: bug

#3058 - Reduce redundant VERBATIM usage.

Pull Request - State: closed - Opened by 1uc 3 months ago - 4 comments

#3057 - Make NOCMODL output formattable.

Pull Request - State: closed - Opened by 1uc 3 months ago - 4 comments

#3056 - Remove `ERRCHK` macro

Pull Request - State: closed - Opened by JCGoran 3 months ago - 4 comments

#3055 - Increase max number of ions per compartment

Pull Request - State: closed - Opened by wthun 3 months ago - 13 comments

#3054 - Re-evaluate Bokeh in documentation Jupyter notebooks and compare with Plotly

Issue - State: open - Opened by matz-e 3 months ago - 3 comments
Labels: enhancement

#3053 - Deduplicate `llgramarea` from RXD.

Issue - State: open - Opened by 1uc 3 months ago

#3052 - std::cerr and std::cout break output; they are not equivalent to Fprintf calls

Issue - State: closed - Opened by ramcdougal 3 months ago - 3 comments
Labels: bug

#3051 - Use `const nb::tuple&` everywhere.

Pull Request - State: closed - Opened by 1uc 3 months ago - 2 comments

#3050 - Make OpenMP handling more canonical.

Pull Request - State: closed - Opened by matz-e 3 months ago - 14 comments

#3049 - Add `_cvode_abstol` to header

Pull Request - State: closed - Opened by JCGoran 3 months ago - 5 comments

#3048 - dlist is no more used since 15b3b3f5

Pull Request - State: closed - Opened by alkino 3 months ago - 10 comments

#3047 - Simplify if statement with container

Pull Request - State: open - Opened by JCGoran 3 months ago - 8 comments

#3046 - Test NMODL with CMake exports.

Pull Request - State: closed - Opened by matz-e 3 months ago - 3 comments

#3045 - Searching the documentation for list returns every doxygen page and nothing useful

Issue - State: open - Opened by ramcdougal 3 months ago
Labels: documentation

#3044 - Remove macros from `capac.cpp`

Pull Request - State: closed - Opened by JCGoran 3 months ago - 4 comments

#3043 - nanobind: use loads and dumps as callable

Pull Request - State: closed - Opened by alkino 3 months ago - 9 comments

#3042 - Test letting NMODL install pywrapper itself

Pull Request - State: closed - Opened by matz-e 3 months ago - 7 comments

#3041 - Use fmt instead of Sprintf

Pull Request - State: closed - Opened by alkino 3 months ago - 6 comments

#3040 - Support `numpy>=2` and remove `numpy<2` pin

Pull Request - State: closed - Opened by kbvw 3 months ago - 47 comments

#3039 - BugFix: Don't INCREF a Py section just allocated

Pull Request - State: open - Opened by ferdonline 3 months ago - 21 comments

#3038 - Improve wheel-building experience on multi-arch MacOS

Pull Request - State: closed - Opened by JCGoran 3 months ago - 7 comments

#3037 - remove mention of spatial_method(), node_data(), NODE_DATA, METHOD3

Pull Request - State: closed - Opened by nrnhines 3 months ago - 7 comments

#3036 - HOC template with `public morphology`.

Issue - State: closed - Opened by 1uc 3 months ago - 1 comment

#3035 - Remove unused NEMO simulator compatibility

Pull Request - State: closed - Opened by alkino 3 months ago - 3 comments

#3034 - Use nanobind for python BBS implementation

Pull Request - State: closed - Opened by alkino 3 months ago - 16 comments

#3033 - Py Bindings: Remove pointless borrowing of arguments

Pull Request - State: open - Opened by ferdonline 3 months ago - 7 comments

#3032 - fix: Add Git version check for --depth option in submodule update

Pull Request - State: closed - Opened by jorblancoa 3 months ago - 6 comments

#3031 - Cleanup `PyMemberDef`

Pull Request - State: closed - Opened by mgeplf 3 months ago - 11 comments

#3030 - added simple sys.getrefcount tests of current baseline

Pull Request - State: open - Opened by mgeplf 3 months ago - 9 comments

#3029 - Keep `self` alive.

Pull Request - State: closed - Opened by 1uc 3 months ago - 2 comments

#3028 - Support `cython>=3` and remove `cython<3` pin.

Pull Request - State: closed - Opened by kbvw 3 months ago - 10 comments

#3027 - Cleanup python __init__

Pull Request - State: closed - Opened by mgeplf 3 months ago - 5 comments

#3026 - Type of mechanism should not be < 0

Pull Request - State: closed - Opened by alkino 3 months ago - 4 comments

#3025 - Add helper for parsing tuples using nanobind

Pull Request - State: open - Opened by mgeplf 4 months ago - 11 comments

#3024 - Use more nanobind API

Pull Request - State: closed - Opened by ferdonline 4 months ago - 13 comments

#3023 - Python object INCREF verification

Pull Request - State: closed - Opened by ferdonline 4 months ago - 14 comments

#3022 - Review ref counting near `Py2NRNString`.

Issue - State: open - Opened by 1uc 4 months ago

#3021 - NEURON 8.2.x fails to build on MacOS 14

Issue - State: open - Opened by JCGoran 4 months ago - 3 comments
Labels: bug, building, macOS

#3020 - Review refcounting in `NpySObj_contains`.

Issue - State: open - Opened by 1uc 4 months ago

#3019 - Use nb::dict instead of raw Py API. Fix items ref count

Pull Request - State: closed - Opened by ferdonline 4 months ago - 10 comments

#3018 - Track temp py objects using nanobind

Pull Request - State: closed - Opened by ferdonline 4 months ago - 10 comments

#3017 - Fix various CI issues

Pull Request - State: closed - Opened by JCGoran 4 months ago - 4 comments

#3016 - Add specific NumPy version for aarch64 build

Pull Request - State: closed - Opened by JCGoran 4 months ago - 3 comments

#3015 - Install numpy for all platform

Pull Request - State: closed - Opened by alkino 4 months ago - 3 comments

#3014 - Update docs for building aarch64 wheels

Pull Request - State: closed - Opened by heerener 4 months ago - 4 comments

#3013 - 8.2.6 changelog

Pull Request - State: closed - Opened by heerener 4 months ago - 3 comments

#3012 - NEURON_WHEEL_VERSION

Pull Request - State: closed - Opened by heerener 4 months ago - 2 comments

#3011 - pyenv-py-ver for py3.12 for 8.2.6

Pull Request - State: closed - Opened by heerener 4 months ago - 2 comments

#3010 - Unable to access surface mesh from swc file.

Issue - State: open - Opened by AlexMcSD 4 months ago
Labels: bug, CI

#3009 - Update artefact links in documentation for 8.2.6

Pull Request - State: closed - Opened by heerener 4 months ago - 3 comments

#3008 - Changelog for 8.2.6

Pull Request - State: closed - Opened by heerener 4 months ago - 2 comments

#3007 - Pin setuptools to a known working version

Pull Request - State: closed - Opened by JCGoran 4 months ago - 7 comments

#3006 - Pin setuptools to a known working version

Pull Request - State: closed - Opened by heerener 4 months ago - 3 comments

#3004 - Updating instruction to build neuron on windows

Pull Request - State: open - Opened by ceciliaromaro 4 months ago - 6 comments

#3003 - Add dev docs: py-package build+test (+ note for mac)

Pull Request - State: closed - Opened by ferdonline 4 months ago - 9 comments

#3002 - Solving "Add -h / --help option for nrnivmodl #2996" for windows

Pull Request - State: closed - Opened by ceciliaromaro 4 months ago - 3 comments

#3001 - Support negative defined values

Pull Request - State: closed - Opened by alkino 4 months ago - 8 comments

#3000 - `Update hh.mod for CoreNEURON compatibility` changes hh.mod in place during build

Issue - State: open - Opened by mgeplf 4 months ago - 3 comments
Labels: bug

#2999 - Negative DEFINE values aren't supported.

Issue - State: closed - Opened by 1uc 4 months ago - 3 comments

#2998 - Updating NEURON instruction installation on windows

Pull Request - State: open - Opened by ceciliaromaro 4 months ago - 6 comments

#2997 - Updating NEURON instruction installation on windows

Pull Request - State: closed - Opened by ceciliaromaro 4 months ago - 4 comments

#2996 - Add -h / --help option for nrnivmodl

Pull Request - State: closed - Opened by pramodk 4 months ago - 9 comments

#2995 - Add ubuntu-24.04 CI

Pull Request - State: closed - Opened by alkino 4 months ago - 5 comments

#2994 - Have NMODL generate the solver header files.

Pull Request - State: open - Opened by matz-e 4 months ago - 11 comments

#2993 - Move Developer Build documentation.

Issue - State: open - Opened by 1uc 4 months ago - 2 comments

#2992 - Support negative number for limits

Pull Request - State: closed - Opened by alkino 4 months ago - 7 comments

#2991 - Improve comments.

Pull Request - State: closed - Opened by 1uc 4 months ago - 4 comments

#2990 - Remove files from autotools

Pull Request - State: closed - Opened by alkino 4 months ago - 3 comments

#2989 - Updating the installation of neuron instructions on windows

Pull Request - State: closed - Opened by ceciliaromaro 4 months ago - 3 comments

#2988 - clang formatter not aware of our IF macros

Issue - State: closed - Opened by ramcdougal 4 months ago - 1 comment
Labels: build system, dev

#2987 - Negative PARAMETER limits.

Issue - State: closed - Opened by 1uc 4 months ago - 3 comments

#2986 - Docs: Using LIKWID with NEURON for performance analysis

Pull Request - State: closed - Opened by pramodk 4 months ago - 11 comments
Labels: documentation

#2985 - clang-format problems with IFGUI...ENDGUI

Pull Request - State: closed - Opened by nrnhines 4 months ago - 6 comments

#2984 - More informative error when cannot import hoc module

Pull Request - State: closed - Opened by nrnhines 4 months ago - 6 comments

#2983 - Allow choosing specific regions to measure via instrumentation API

Pull Request - State: closed - Opened by pramodk 4 months ago - 6 comments

#2982 - Close Instrumentor properly when application calls h.quit()

Pull Request - State: closed - Opened by pramodk 4 months ago - 8 comments