Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neuronsimulator/nrn issues and pull requests

#2104 - Cornu/less string

Pull Request - State: closed - Opened by alkino almost 2 years ago - 2 comments

#2096 - Wheel that supports MUSIC if installed.

Pull Request - State: open - Opened by nrnhines almost 2 years ago - 45 comments

#2091 - NRN_ENABLE_MUSIC on wheels

Issue - State: open - Opened by nrnhines about 2 years ago - 21 comments

#2034 - ThreadSanitizer fixes and CI

Pull Request - State: closed - Opened by olupton about 2 years ago - 35 comments

#2027 - Use SOA format for mechanism data

Pull Request - State: open - Opened by olupton about 2 years ago - 256 comments

#2011 - NMODL Documentation Improvement

Pull Request - State: closed - Opened by iomaganaris about 2 years ago - 8 comments

#2008 - Add a test showing an ASan issue in regex.

Pull Request - State: closed - Opened by olupton about 2 years ago - 3 comments

#1960 - ExternalProject SUNDIALS 3.2.1

Pull Request - State: open - Opened by alexsavulescu about 2 years ago - 51 comments

#1912 - basic NetCon graph in ModelView

Pull Request - State: open - Opened by ramcdougal over 2 years ago - 2 comments
Labels: enhancement, gui

#1876 - Improve C++ migration documentation and link to it from nrnivmodl

Issue - State: closed - Opened by olupton over 2 years ago
Labels: enhancement, documentation

#1861 - Replace random number implementations in `src/gnu` with std library and random123 gen

Pull Request - State: open - Opened by iomaganaris over 2 years ago - 11 comments

#1858 - Meaningful Python types

Pull Request - State: closed - Opened by ramcdougal over 2 years ago - 34 comments
Labels: python, hackron2022, hackron2023

#1857 - C++/Python/HOC: NEURON error handling improvements

Issue - State: open - Opened by alexsavulescu over 2 years ago - 8 comments
Labels: hackron2022

#1854 - pytest handling of C++ errors

Pull Request - State: closed - Opened by olupton over 2 years ago - 8 comments
Labels: testing, hackron2022

#1854 - pytest handling of C++ errors

Pull Request - State: closed - Opened by olupton over 2 years ago - 8 comments
Labels: testing, hackron2022

#1838 - Replace setpointer uses in documentation with assignment

Issue - State: open - Opened by ramcdougal over 2 years ago - 1 comment
Labels: documentation

#1826 - syntax highlight, more links, Python3 fix

Pull Request - State: closed - Opened by ramcdougal over 2 years ago - 1 comment
Labels: documentation

#1825 - mech_api.h: expose more declarations to translated MOD files

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 10 comments

#1825 - mech_api.h: expose more declarations to translated MOD files

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 10 comments

#1811 - oc_ansi.h: add some definitions used in mods (ModedlDB & BBP)

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#1811 - oc_ansi.h: add some definitions used in mods (ModedlDB & BBP)

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#1758 - nmodl "EXTERNAL array" should translate as "double array[];"

Pull Request - State: open - Opened by nrnhines over 2 years ago - 11 comments

#1755 - nrnrandom.h: declare nrn*random* to mechanisms.

Pull Request - State: closed - Opened by olupton over 2 years ago - 4 comments

#1755 - nrnrandom.h: declare nrn*random* to mechanisms.

Pull Request - State: closed - Opened by olupton over 2 years ago - 4 comments

#1733 - drop Python 3.6 support

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#1733 - drop Python 3.6 support

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#1728 - NEURON documentation plan

Issue - State: open - Opened by ramcdougal over 2 years ago - 2 comments
Labels: help wanted, documentation, good for beginners

#1725 - Improve documentation targets.

Pull Request - State: closed - Opened by olupton over 2 years ago - 14 comments

#1725 - Improve documentation targets.

Pull Request - State: closed - Opened by olupton over 2 years ago - 14 comments

#1723 - Disallow STATE variables being GLOBAL

Pull Request - State: closed - Opened by pramodk over 2 years ago - 2 comments

#1723 - Disallow STATE variables being GLOBAL

Pull Request - State: closed - Opened by pramodk over 2 years ago - 2 comments

#1718 - Calling rxd.set_solve_type has no effect after finitialize

Issue - State: open - Opened by ramcdougal over 2 years ago - 2 comments
Labels: bug, rxd

#1686 - rxd.nodelist.NodeList should be restricted to containing rxd.node.Node instances

Issue - State: closed - Opened by ramcdougal over 2 years ago - 1 comment
Labels: rxd

#1671 - rxd reaction compilation fails with Anaconda on Windows if User Name has a space

Issue - State: open - Opened by ramcdougal over 2 years ago - 17 comments
Labels: bug, windows, rxd

#1649 - Add support for macOS arm64 wheels

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 3 comments

#1649 - Add support for macOS arm64 wheels

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 3 comments

#1648 - Have a look at `cibuildwheel` for wheel building

Issue - State: open - Opened by alexsavulescu over 2 years ago - 1 comment
Labels: building, wheel, informational

#1644 - NodeList.include_flux doesn't work with constant fluxes

Issue - State: closed - Opened by ramcdougal over 2 years ago - 1 comment
Labels: bug, rxd

#1570 - macOS universal2 package installer

Pull Request - State: closed - Opened by nrnhines almost 3 years ago - 20 comments

#1570 - macOS universal2 package installer

Pull Request - State: closed - Opened by nrnhines almost 3 years ago - 20 comments

#1549 - Rxd sourcevar

Pull Request - State: open - Opened by nrnhines almost 3 years ago - 6 comments

#1527 - Integration test for stressing inter-thread event transfer

Issue - State: open - Opened by pramodk about 3 years ago - 1 comment
Labels: testing, improvement, dev

#1495 - Data Structures redesign & Memory Management

Issue - State: open - Opened by alexsavulescu about 3 years ago - 2 comments
Labels: dev, informational, refactoring

#1495 - Data Structures redesign & Memory Management

Issue - State: closed - Opened by alexsavulescu about 3 years ago - 2 comments
Labels: dev, informational, refactoring

#1456 - Updated best practices Python project management

Pull Request - State: open - Opened by Helveg about 3 years ago - 20 comments

#1427 - Renaming NRNBBCORE macro and bbcore_read/bbcore_write methods in translated C/C++ files

Issue - State: open - Opened by pramodk about 3 years ago - 1 comment
Labels: coreneuron, proposal, improvement, dev, nmodl

#1403 - drop legacy hash implementations: nrnhash

Pull Request - State: closed - Opened by alexsavulescu over 3 years ago - 6 comments

#1386 - Add/extend tests to use prcellstate

Issue - State: open - Opened by olupton over 3 years ago
Labels: enhancement, testing

#1378 - NEURON Model View for ModelDB 239421 crashes

Issue - State: closed - Opened by ramcdougal over 3 years ago - 4 comments
Labels: bug

#1371 - Remove `src/readline` legacy code

Pull Request - State: closed - Opened by alexsavulescu over 3 years ago - 5 comments

#1371 - Remove `src/readline` legacy code

Pull Request - State: closed - Opened by alexsavulescu over 3 years ago - 5 comments

#1360 - NEURON: extra_scatter_gather not allowed with multiple threads

Issue - State: closed - Opened by ikitayama over 3 years ago - 8 comments
Labels: bug

#1360 - NEURON: extra_scatter_gather not allowed with multiple threads

Issue - State: closed - Opened by ikitayama over 3 years ago - 8 comments
Labels: bug

#1355 - Implement BBSaveState for Python cells

Pull Request - State: closed - Opened by alexsavulescu over 3 years ago - 26 comments

#1328 - Drop legacy SUNDIALS and go upstream

Issue - State: open - Opened by alexsavulescu over 3 years ago - 7 comments
Labels: dev, refactoring

#1324 - CVode may select different timesteps for some models on Windows and Linux

Issue - State: open - Opened by nrnhines over 3 years ago
Labels: bug

#1323 - Equation in which the "^" operator used can't be translated well.

Issue - State: closed - Opened by ikitayama over 3 years ago - 3 comments
Labels: bug

#1323 - Equation in which the "^" operator used can't be translated well.

Issue - State: closed - Opened by ikitayama over 3 years ago - 3 comments
Labels: bug

#1321 - PlostShape prevents python exit in Windows

Issue - State: closed - Opened by adamjhn over 3 years ago - 1 comment
Labels: bug, windows

#1318 - Introduce support for reloading dynamic libraries

Pull Request - State: open - Opened by sergiorg-hpc over 3 years ago - 8 comments

#1311 - `Import3D` does not recover properly from parse errors

Issue - State: open - Opened by Helveg over 3 years ago - 2 comments
Labels: bug

#1279 - RangeVarPlot of rxd objects missing in documentation

Issue - State: closed - Opened by ramcdougal over 3 years ago - 1 comment
Labels: documentation, rxd

#1278 - node in segment check

Issue - State: closed - Opened by ramcdougal over 3 years ago
Labels: enhancement, rxd

#1270 - Make rxd.Species keep the corresponding SpeciesOnRegion alive.

Pull Request - State: closed - Opened by adamjhn over 3 years ago - 2 comments
Labels: rxd

#1265 - NEURON: `model SUFFIX` is not thread safe

Issue - State: closed - Opened by ikitayama over 3 years ago - 1 comment
Labels: question, documentation

#1265 - NEURON: `model SUFFIX` is not thread safe

Issue - State: closed - Opened by ikitayama over 3 years ago - 1 comment
Labels: question, documentation

#1235 - Random123 quality in NEURON

Issue - State: open - Opened by nrnhines over 3 years ago - 7 comments
Labels: testing, good for beginners

#1226 - Derived units calculation issue

Issue - State: closed - Opened by iomaganaris over 3 years ago - 2 comments
Labels: bug, units

#1186 - bugfix: Setting extracellular diffusion coefficients.

Pull Request - State: closed - Opened by adamjhn over 3 years ago - 1 comment
Labels: bug, rxd

#1178 - subsequent `setup_transfer -> stdinit` produces different results

Issue - State: closed - Opened by alexsavulescu over 3 years ago - 13 comments
Labels: bug

#1151 - need a friendly way of getting volume of a region

Issue - State: open - Opened by ramcdougal over 3 years ago - 1 comment
Labels: enhancement, rxd

#1088 - node.include_flux should support _Arithmeticed objects

Issue - State: open - Opened by ramcdougal over 3 years ago
Labels: enhancement, rxd

#1063 - can't merge docs because the status checks never run

Issue - State: open - Opened by ramcdougal over 3 years ago - 6 comments
Labels: bug, build system, documentation

#1060 - catch attempts to plot species instead of species on region

Issue - State: closed - Opened by ramcdougal over 3 years ago - 2 comments
Labels: rxd

#1016 - Should nrnivmodl-core be retired?

Issue - State: closed - Opened by ikitayama over 3 years ago - 10 comments
Labels: bug, question

#970 - PlotShape.variable needs rxd.Species example

Issue - State: closed - Opened by ramcdougal about 4 years ago - 1 comment
Labels: documentation

#949 - We were unable to associate a PlayRecord item with a thread

Issue - State: closed - Opened by ikitayama almost 4 years ago - 4 comments
Labels: bug

#949 - We were unable to associate a PlayRecord item with a thread

Issue - State: closed - Opened by ikitayama almost 4 years ago - 4 comments
Labels: bug

#943 - Network size exceeds the DRAM capacity and program gets killed when exporting the network with nrnbbcore_write

Issue - State: closed - Opened by HolyLow almost 4 years ago - 7 comments
Labels: question

#934 - Use MorphIO for morphology loading

Issue - State: open - Opened by alexsavulescu almost 4 years ago - 12 comments
Labels: enhancement, informational

#934 - Use MorphIO for morphology loading

Issue - State: open - Opened by alexsavulescu almost 4 years ago - 10 comments
Labels: enhancement, informational

#686 - seg fault when calling mechanism function that depends on location without setdata

Issue - State: closed - Opened by wwlytton over 4 years ago - 8 comments
Labels: bug, nmodl

#618 - Issue with Anaconda Python on Mac (and Intel compiler on Mac, problem with PYTHONHOME)

Issue - State: open - Opened by nrnhines over 4 years ago - 2 comments
Labels: bug

#607 - nrnivmodl is always retranslating/recompiling mod files

Issue - State: closed - Opened by pramodk over 4 years ago - 3 comments
Labels: bug, good for beginners

#602 - NEURON_MODULE_OPTIONS env variable to pass in options to ivoc_main

Pull Request - State: closed - Opened by nrnhines over 4 years ago - 22 comments

#289 - Slow compile time with rx3d module and -O3

Issue - State: open - Opened by nrnhines about 5 years ago - 6 comments
Labels: enhancement, build system

#175 - nrnivmodl allows unclosed safe CURIEs

Issue - State: closed - Opened by ramcdougal over 5 years ago - 1 comment
Labels: bug

#100 - Adding -j 4 flag to compile mod files in parallel

Pull Request - State: closed - Opened by ferdonline about 6 years ago - 2 comments