neuronsimulator/nrn issues and pull requests

#3147 - CoreNrn: support for rebalanced files.dat

Pull Request - State: open - Opened by ferdonline 19 days ago - 4 comments

#3147 - CoreNrn: support for rebalanced files.dat

Pull Request - State: open - Opened by ferdonline 19 days ago - 4 comments

#3146 - CoreNeuron to be able to read balanced files.dat

Pull Request - State: closed - Opened by ferdonline 19 days ago - 4 comments

#3146 - CoreNeuron to be able to read balanced files.dat

Pull Request - State: closed - Opened by ferdonline 19 days ago - 4 comments

#3145 - GUI field editor values should not be changeable by user.

Issue - State: open - Opened by nrnhines 22 days ago
Labels: enhancement

#3144 - CoreNEURON error when running on NVIDIA Grace Hopper GPU and NVHPC 24.9

Issue - State: open - Opened by iraikov 23 days ago - 8 comments
Labels: bug

#3144 - CoreNEURON error when running on NVIDIA Grace Hopper GPU and NVHPC 24.9

Issue - State: open - Opened by iraikov 23 days ago - 8 comments
Labels: bug

#3143 - Move reference data from test_rxd.py to rxd_data.json.

Pull Request - State: closed - Opened by adamjhn 24 days ago - 8 comments
Labels: rxd

#3143 - Move reference data from test_rxd.py to rxd_data.json.

Pull Request - State: closed - Opened by adamjhn 24 days ago - 8 comments
Labels: rxd

#3142 - treeset: replace sparse13 by eigen

Pull Request - State: open - Opened by alkino 25 days ago - 9 comments

#3142 - treeset: replace sparse13 by eigen

Pull Request - State: open - Opened by alkino 25 days ago - 9 comments

#3141 - Behaviour of `v` in FUNCTIONs.

Issue - State: closed - Opened by 1uc 25 days ago - 2 comments

#3141 - Behaviour of `v` in FUNCTIONs.

Issue - State: closed - Opened by 1uc 25 days ago - 2 comments

#3140 - Arguments for nrnpy_pyCallObject are created with nanobind

Pull Request - State: closed - Opened by alkino 27 days ago - 8 comments

#3140 - Arguments for nrnpy_pyCallObject are created with nanobind

Pull Request - State: closed - Opened by alkino 27 days ago - 8 comments

#3139 - Reduce warnings

Pull Request - State: open - Opened by alkino 27 days ago - 7 comments

#3138 - How does one create new rxd test data.

Issue - State: closed - Opened by nrnhines 27 days ago - 11 comments

#3137 - NEURON 9.0 release

Issue - State: open - Opened by pramodk 28 days ago
Labels: release

#3137 - NEURON 9.0 release

Issue - State: open - Opened by pramodk 28 days ago
Labels: release

#3136 - We should not used save-always anymore

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3136 - We should not used save-always anymore

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3135 - NRN_ENABLE_DIGEST and NRN_ENABLE_ARCH_INDEP_EXP_POW

Pull Request - State: closed - Opened by nrnhines about 1 month ago - 7 comments

#3134 - Reduce warnings for gnu directory

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3133 - After BBP the private gitlab will runner will not be available

Pull Request - State: closed - Opened by alkino about 1 month ago - 5 comments

#3133 - After BBP the private gitlab will runner will not be available

Pull Request - State: closed - Opened by alkino about 1 month ago - 5 comments

#3132 - Avoid warning coming from internal of eigen

Pull Request - State: closed - Opened by alkino about 1 month ago - 3 comments

#3132 - Avoid warning coming from internal of eigen

Pull Request - State: closed - Opened by alkino about 1 month ago - 3 comments

#3131 - Revert "cleaning around hoccommand_exec_help1 (#3124)"

Pull Request - State: closed - Opened by alkino about 1 month ago - 3 comments

#3130 - Remove complex part of sparse13

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3129 - Master fails to run some tests with NVHPC and -O2 optimisation flag

Issue - State: closed - Opened by pramodk about 1 month ago - 1 comment
Labels: bug

#3129 - Master fails to run some tests with NVHPC and -O2 optimisation flag

Issue - State: closed - Opened by pramodk about 1 month ago - 1 comment
Labels: bug

#3128 - Arguments for nrnpy_pyCallObject are created with nanobind

Pull Request - State: closed - Opened by alkino about 1 month ago - 3 comments

#3127 - nrn_py_CallObject take a nb::object for args

Pull Request - State: closed - Opened by alkino about 1 month ago - 9 comments

#3127 - nrn_py_CallObject take a nb::object for args

Pull Request - State: closed - Opened by alkino about 1 month ago - 9 comments

#3126 - nrn_py_CallObject take a nb::object for args

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3126 - nrn_py_CallObject take a nb::object for args

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3125 - Simplify `synpre.mod`.

Pull Request - State: closed - Opened by 1uc about 1 month ago - 3 comments

#3125 - Simplify `synpre.mod`.

Pull Request - State: closed - Opened by 1uc about 1 month ago - 3 comments

#3124 - cleaning around hoccommand_exec_help1

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3124 - cleaning around hoccommand_exec_help1

Pull Request - State: closed - Opened by alkino about 1 month ago - 6 comments

#3123 - Apple M1 vs x86_64 floating point differences.

Issue - State: closed - Opened by nrnhines about 1 month ago - 7 comments

#3122 - Add NRN_PARALLEL_BUILDS to setup.py

Pull Request - State: closed - Opened by JCGoran about 1 month ago - 4 comments

#3122 - Add NRN_PARALLEL_BUILDS to setup.py

Pull Request - State: closed - Opened by JCGoran about 1 month ago - 4 comments

#3121 - Use newer OpenMPI version on Ubuntu in CI

Pull Request - State: open - Opened by JCGoran about 1 month ago - 3 comments

#3121 - Use newer OpenMPI version on Ubuntu in CI

Pull Request - State: open - Opened by JCGoran about 1 month ago - 3 comments

#3120 - Use nb::iterator instead of Py_Iterator

Pull Request - State: closed - Opened by alkino about 1 month ago - 12 comments

#3120 - Use nb::iterator instead of Py_Iterator

Pull Request - State: closed - Opened by alkino about 1 month ago - 12 comments

#3119 - OCSMALL is never set and never used

Pull Request - State: open - Opened by alkino about 1 month ago - 3 comments

#3119 - OCSMALL is never set and never used

Pull Request - State: open - Opened by alkino about 1 month ago - 3 comments

#3118 - Replace usage of `PyWeakref_GetObject()` since it is/will be deprecated.

Issue - State: open - Opened by mgeplf about 1 month ago
Labels: bug

#3118 - Replace usage of `PyWeakref_GetObject()` since it is/will be deprecated.

Issue - State: open - Opened by mgeplf about 1 month ago
Labels: bug

#3117 - block unsupported use of set_solve_type

Pull Request - State: closed - Opened by ramcdougal about 2 months ago - 4 comments

#3116 - NRN_OVERRIDE_LD_PRELOAD can fix AddressSanitizer: CHECK failed: asan_interceptors.cpp

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 6 comments

#3115 - Remove stdout/stderr output from Python tests

Issue - State: open - Opened by JCGoran about 2 months ago - 1 comment
Labels: testing

#3114 - Fix `PytestReturnNotNoneWarning`

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 4 comments

#3114 - Fix `PytestReturnNotNoneWarning`

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 4 comments

#3113 - Remove mention of `CORENRN_ENABLE_NMODL` option

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 4 comments

#3112 - Remove unused int_asbuffer

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 4 comments

#3111 - sonar: stop reporting error from C++20

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3110 - Move nmodl directory to nocmodl

Pull Request - State: closed - Opened by alkino about 2 months ago - 7 comments

#3109 - AddressSanitizer: CHECK failed: asan_interceptors.cpp

Issue - State: closed - Opened by nrnhines about 2 months ago - 2 comments

#3108 - Remove deprecated python 3.8

Pull Request - State: open - Opened by alkino about 2 months ago - 8 comments

#3107 - Use ftpmirror.gnu.org as requested by gnu.org

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3107 - Use ftpmirror.gnu.org as requested by gnu.org

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3106 - Update docs about possible MOD files compilation errors with >=9.0

Pull Request - State: closed - Opened by pramodk about 2 months ago - 12 comments

#3105 - Remove deprecated test methods

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 4 comments

#3104 - Use the ubuntu package for automake-1.16

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3104 - Use the ubuntu package for automake-1.16

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3103 - Test CI for Python 3.13

Pull Request - State: open - Opened by JCGoran about 2 months ago - 7 comments

#3103 - Test CI for Python 3.13

Pull Request - State: open - Opened by JCGoran about 2 months ago - 7 comments

#3102 - Bump MacOS versions in CI

Pull Request - State: open - Opened by JCGoran about 2 months ago - 4 comments

#3102 - Bump MacOS versions in CI

Pull Request - State: open - Opened by JCGoran about 2 months ago - 4 comments

#3100 - Grids: remove unused functions

Pull Request - State: closed - Opened by alkino about 2 months ago - 5 comments

#3100 - Grids: remove unused functions

Pull Request - State: closed - Opened by alkino about 2 months ago - 5 comments

#3099 - nanobind: use gil_scoped_acquire

Pull Request - State: closed - Opened by alkino about 2 months ago - 5 comments

#3098 - Hines/ions tmp

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 12 comments

#3098 - Hines/ions tmp

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 12 comments

#3097 - Code change for ion and ion style semantics. Unlimited numbers.

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 12 comments

#3096 - Ion and ion style semantics code change allows max_int number/2 of ion types.

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 2 comments

#3096 - Ion and ion style semantics code change allows max_int number/2 of ion types.

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 2 comments

#3095 - Investigate incompatibility of MUSIC with mpi4py version 4

Issue - State: open - Opened by JCGoran about 2 months ago - 2 comments
Labels: python, parallel, cython

#3094 - NRN_ENABLE_PERFORMANCE_TESTS (=ON) failing on a pretty capable unbuntu 24.04

Issue - State: closed - Opened by nrnhines about 2 months ago - 3 comments

#3094 - NRN_ENABLE_PERFORMANCE_TESTS (=ON) failing on a pretty capable unbuntu 24.04

Issue - State: closed - Opened by nrnhines about 2 months ago - 3 comments

#3093 - Remove toggling of TABLE from hh.mod (CoreNEURON + NMODL compatibility)

Pull Request - State: closed - Opened by pramodk about 2 months ago - 7 comments

#3093 - Remove toggling of TABLE from hh.mod (CoreNEURON + NMODL compatibility)

Pull Request - State: closed - Opened by pramodk about 2 months ago - 7 comments

#3092 - Remove feature checkpoint

Pull Request - State: closed - Opened by alkino about 2 months ago - 3 comments

#3091 - Fix lexer for ONTOLOGY parsing

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3091 - Fix lexer for ONTOLOGY parsing

Pull Request - State: closed - Opened by alkino about 2 months ago - 4 comments

#3090 - Use nullptr in checkpnt

Pull Request - State: closed - Opened by alkino about 2 months ago - 3 comments

#3090 - Use nullptr in checkpnt

Pull Request - State: closed - Opened by alkino about 2 months ago - 3 comments

#3089 - no limit on number of ion mechanisms

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 11 comments

#3089 - no limit on number of ion mechanisms

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 11 comments

#3086 - Rename new MOD file.

Pull Request - State: closed - Opened by 1uc about 2 months ago - 5 comments

#3084 - Remove XDR option and PortablePointer

Pull Request - State: closed - Opened by alkino about 2 months ago - 3 comments

#3084 - Remove XDR option and PortablePointer

Pull Request - State: closed - Opened by alkino about 2 months ago - 3 comments

#3083 - Replace IVOS/Table by std::map

Pull Request - State: closed - Opened by alkino about 2 months ago - 5 comments

#3083 - Replace IVOS/Table by std::map

Pull Request - State: closed - Opened by alkino about 2 months ago - 5 comments

#3081 - Test for PR 3055

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 16 comments

#3081 - Test for PR 3055

Pull Request - State: closed - Opened by nrnhines about 2 months ago - 16 comments

#3080 - Mark RXD test as skip on Ubuntu 22+

Pull Request - State: closed - Opened by JCGoran about 2 months ago - 8 comments

GitHub / neuronsimulator/nrn issues and pull requests