neuronsimulator/nrn-modeldb-ci issues and pull requests

#141 - Fixes for RNG, part 4

Pull Request - State: closed - Opened by JCGoran 2 months ago

#140 - Fixes for RNG, part 3

Pull Request - State: closed - Opened by JCGoran 2 months ago

#139 - Fixes for RNG, part 2

Pull Request - State: closed - Opened by JCGoran 2 months ago

#138 - Fix models which use ACG

Issue - State: open - Opened by JCGoran 2 months ago

#137 - Fixes for RNG, part 1

Pull Request - State: closed - Opened by JCGoran 2 months ago - 1 comment

#136 - Fix issue with `pip install --find-links`

Pull Request - State: closed - Opened by JCGoran 3 months ago

#135 - Azure drop URL ignored

Issue - State: closed - Opened by JCGoran 3 months ago - 1 comment
Labels: bug, CI

#134 - Fixes for models 33975 and 33975

Pull Request - State: open - Opened by JCGoran 3 months ago

#133 - Models with an invalid config do not show up as errors

Issue - State: open - Opened by JCGoran 4 months ago
Labels: bug

#132 - Pick a dir for 2016662

Pull Request - State: closed - Opened by JCGoran 4 months ago

#131 - Fix model 2016658

Pull Request - State: closed - Opened by JCGoran 5 months ago

#130 - Skip 267741

Pull Request - State: closed - Opened by alkino 5 months ago

#129 - Fix for NEURON 9 for 267741

Pull Request - State: open - Opened by JCGoran 6 months ago

#128 - Skip model 2016138

Pull Request - State: closed - Opened by JCGoran 6 months ago

#127 - Specify dir for model 2016138

Pull Request - State: open - Opened by JCGoran 6 months ago

#126 - Fix models that do not compile

Issue - State: open - Opened by JCGoran 6 months ago

#125 - Skip models that do not compile

Pull Request - State: closed - Opened by JCGoran 6 months ago

#124 - Pin pip to version <=24.0

Pull Request - State: closed - Opened by JCGoran 6 months ago

#123 - Investigate segfault for model 136095 on NEURON 8.2.4

Issue - State: open - Opened by JCGoran 7 months ago - 1 comment

#122 - Explictly specify numpy version

Pull Request - State: closed - Opened by JCGoran 7 months ago

#121 - Fix regex pattern for model 146030

Pull Request - State: closed - Opened by JCGoran 10 months ago

#120 - Discuss merits of push vs pull model for CI

Issue - State: open - Opened by JCGoran 11 months ago
Labels: question

#119 - Add running multiple directories

Pull Request - State: open - Opened by JCGoran 11 months ago - 1 comment

#118 - Add ability to run mod files from multiple directories

Issue - State: open - Opened by JCGoran 11 months ago
Labels: enhancement

#117 - model_dir for 267088 2016137

Pull Request - State: closed - Opened by nrnhines 11 months ago

#116 - Add .gitignore

Pull Request - State: closed - Opened by JCGoran 11 months ago

#115 - formatting: run Black on project

Pull Request - State: closed - Opened by JCGoran 11 months ago

#114 - fix 150245 pattern replace

Pull Request - State: closed - Opened by nrnhines 11 months ago - 6 comments

#113 - Use of NetStim.noiseFromRandom123: gout same 8.2 and 9.0

Pull Request - State: closed - Opened by nrnhines 11 months ago

#112 - Use new action for removing support of node16 to node20

Pull Request - State: closed - Opened by alkino 11 months ago

#111 - modeldb-meta.yaml clone or copy a local repository

Pull Request - State: open - Opened by nrnhines 11 months ago

#103 - Set different source for 2014998

Pull Request - State: closed - Opened by JCGoran about 1 year ago

#100 - Remove warnings about dynamic units

Pull Request - State: closed - Opened by JCGoran about 1 year ago

#99 - Fix multiple mod file dirs in 267768

Pull Request - State: open - Opened by JCGoran about 1 year ago

#98 - Fix multiple mod file dirs in 267694

Pull Request - State: closed - Opened by JCGoran about 1 year ago

#97 - use Batch.hoc in 136803

Pull Request - State: open - Opened by ohm314 over 1 year ago

#96 - Document releasing & add runmodels activity diagram

Pull Request - State: closed - Opened by alexsavulescu over 1 year ago

#95 - model id is occasionally different from the id of the zip file

Pull Request - State: open - Opened by nrnhines over 1 year ago - 1 comment

#94 - NEURON version of Traub 2005 model should be tested. 82894

Issue - State: open - Opened by nrnhines over 1 year ago - 9 comments

#93 - Update docs

Pull Request - State: closed - Opened by olupton over 1 year ago

#92 - gout: report errors; 267599, 2014814: model dirs

Pull Request - State: closed - Opened by olupton over 1 year ago

#91 - ModelDB contains files with invalid UTF-8

Issue - State: open - Opened by ctrl-z-9000-times over 1 year ago - 4 comments

#90 - Fix bad assumptions in 241169 and re-enable execution

Issue - State: open - Opened by olupton over 1 year ago
Labels: bug, curate

#89 - Improve .mod search strategy

Pull Request - State: closed - Opened by olupton over 1 year ago - 3 comments

#88 - Fetch models from https://modeldb.science/

Pull Request - State: closed - Opened by olupton over 1 year ago

#87 - fix bug in report.py

Pull Request - State: closed - Opened by ctrl-z-9000-times over 1 year ago

#86 - Model 260015 doesn't do anything non-trivial

Issue - State: open - Opened by olupton over 1 year ago
Labels: bug, enhancement, good first issue, CI, curate

#85 - Tweak models that are now using different mosinit.hoc files

Pull Request - State: closed - Opened by olupton over 1 year ago

#84 - Improve error and diff handling

Pull Request - State: closed - Opened by olupton over 1 year ago

#83 - 267355: use PR

Pull Request - State: closed - Opened by olupton over 1 year ago

#82 - MDB_MODEL_DOWNLOAD_URL needs to be updated

Issue - State: closed - Opened by ramcdougal over 1 year ago - 6 comments

#81 - Remove hardcoded line number

Pull Request - State: closed - Opened by olupton over 1 year ago

#80 - Report meaningful pipeline status

Pull Request - State: closed - Opened by olupton almost 2 years ago - 3 comments

#79 - curate 244922, 143719

Pull Request - State: closed - Opened by alexsavulescu almost 2 years ago

#78 - Include more model output data in diff comparison and reports

Issue - State: open - Opened by alexsavulescu almost 2 years ago
Labels: enhancement, curate

#77 - Clean up differences between neuron and neuron-nightly

Pull Request - State: closed - Opened by olupton almost 2 years ago - 5 comments

#76 - macOS fixes, model curation, etc.

Pull Request - State: closed - Opened by olupton almost 2 years ago - 3 comments

#75 - Support ModelDB entries that contain multiple models

Issue - State: open - Opened by olupton almost 2 years ago - 1 comment
Labels: enhancement

#74 - Model 262373 does not have mosinit.hoc / a sensible small test configuration

Issue - State: open - Opened by olupton almost 2 years ago

#73 - `getmodels` improvements

Issue - State: open - Opened by alexsavulescu almost 2 years ago
Labels: enhancement, good first issue

#72 - `getmodels`: download from GitHub

Pull Request - State: open - Opened by alexsavulescu about 2 years ago - 2 comments

#71 - Make sure GH and ModelDB are in sync (same content)

Issue - State: closed - Opened by alexsavulescu about 2 years ago - 7 comments
Labels: bug

#70 - CI for ModelDBRepository ?

Issue - State: open - Opened by alexsavulescu about 2 years ago
Labels: enhancement, question, CI

#69 - Curate more & some improvements

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#68 - Curate new models from #50

Issue - State: open - Opened by alexsavulescu about 2 years ago
Labels: curate

#67 - Fixes for SoA NEURON data structures

Pull Request - State: closed - Opened by olupton about 2 years ago

#66 - utf-8: more debug output when decoding fails

Pull Request - State: closed - Opened by olupton about 2 years ago

#65 - reusable: don't set MODELS_TO_RUN on workflow_call

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#64 - Add runtimes report for nrnivmodl & model runtimes

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#63 - reusable workflow setup

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#62 - `nrn_run` use `unified_diff` from difflib instead of `make_table`

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#61 - difflib make_table can be slow for big outputs of nrn_run

Issue - State: closed - Opened by alexsavulescu about 2 years ago
Labels: bug

#60 - branch for DataStructures PR

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago

#59 - Improvement: break-down runtimes

Pull Request - State: closed - Opened by alexsavulescu about 2 years ago - 1 comment

#58 - `diffgout` doesn't work in user installation

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: bug, good first issue

#57 - CI: upload artifacts after each NEURON version

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: enhancement, good first issue, CI

#56 - bring several GH actions up-to-date

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago

#55 - bump CI timeout to 90m

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 2 comments

#54 - `--full-run` mode

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: enhancement

#53 - Global status for CI run

Issue - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment
Labels: enhancement, help wanted, CI

#52 - curate 136803 & update PR CI selection of models

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#51 - mitigate "can't open DISPLAY"

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago

#50 - Nof models mismatch between modeldb API and senselab

Issue - State: closed - Opened by alexsavulescu over 2 years ago - 8 comments
Labels: bug

#49 - architecture: use platform.machine()

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago

#48 - make sed cross-platform

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 2 comments

#47 - MODELDB CI: GitHub synergy

Issue - State: open - Opened by alexsavulescu over 2 years ago - 1 comment
Labels: question

#46 - diff reports macOS vs Ubuntu

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: question

#45 - `runmodels`: architecture is hardcoded (`x86_64`)

Issue - State: closed - Opened by alexsavulescu over 2 years ago
Labels: enhancement

#44 - `modeldb-run.yaml`: `sed -i` is not portable

Issue - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment
Labels: bug, macOS

#43 - Add `--inplace` option for `runmodels`

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 1 comment

#42 - CI: timeout in 60 min

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago

#41 - Add more python models to the modeldb-run.yaml

Pull Request - State: open - Opened by kotsaloscv over 2 years ago - 4 comments

#40 - detect if no display is available and propose `--virtual`

Issue - State: open - Opened by alexsavulescu over 2 years ago - 2 comments
Labels: enhancement, good first issue

#39 - MODELDB CI: Add more python models to the modeldb-run.yaml (python support available)

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: enhancement, curate

#38 - Add testing

Issue - State: open - Opened by alexsavulescu over 2 years ago
Labels: enhancement, CI

#35 - What is the workflow for fixing a model?

Issue - State: closed - Opened by nrnhines over 2 years ago - 3 comments

#34 - subprocess.Popen need shell=True on windows.

Pull Request - State: open - Opened by nrnhines over 2 years ago - 2 comments

#33 - Curate skipped models

Issue - State: open - Opened by alexsavulescu over 2 years ago - 1 comment
Labels: curate

#32 - `runmodels`: add `--norun` option

Pull Request - State: closed - Opened by alexsavulescu over 2 years ago - 4 comments

#31 - Build only (with no run) for Windows debugging.

Issue - State: closed - Opened by nrnhines over 2 years ago - 2 comments

GitHub / neuronsimulator/nrn-modeldb-ci issues and pull requests