neuroinformatics-unit/movement issues and pull requests

#93 - Add the ability to import skeletons

Issue - State: open - Opened by lochhh about 1 year ago - 6 comments

#92 - Added function to load poses from LightningPose

Pull Request - State: closed - Opened by DhruvSkyy about 1 year ago - 2 comments

#91 - Require pandas[hdf5] instead of vanilla pandas

Issue - State: closed - Opened by niksirbi about 1 year ago - 3 comments
Labels: enhancement

#90 - Add support for loading "trackless" SLEAP files

Pull Request - State: closed - Opened by lochhh about 1 year ago - 2 comments

#89 - Support reading SLEAP files without Tracks

Issue - State: closed - Opened by lochhh about 1 year ago
Labels: enhancement, core feature

#88 - Export SLEAP .h5 analysis files

Pull Request - State: closed - Opened by lochhh about 1 year ago - 2 comments

#87 - Added LightningPose data to pooch dataset registry

Pull Request - State: closed - Opened by niksirbi about 1 year ago - 2 comments

#86 - Update `datasets.py`

Pull Request - State: closed - Opened by b-peri about 1 year ago - 5 comments

#85 - Add sample SLEAP data containing mixed (user/predicted) labels

Pull Request - State: closed - Opened by lochhh about 1 year ago - 3 comments

#84 - Handle SLEAP data with mixed (user/predicted) labels

Issue - State: closed - Opened by lochhh about 1 year ago
Labels: enhancement

#83 - Ability to save multi-animal pose tracks to single-animal files

Pull Request - State: closed - Opened by DhruvSkyy about 1 year ago - 3 comments

#82 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#81 - Improve google indexing for the website

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: documentation, enhancement

#80 - Docs link check

Pull Request - State: closed - Opened by lochhh over 1 year ago - 4 comments

#79 - SLEAP read user labels

Pull Request - State: closed - Opened by lochhh over 1 year ago - 2 comments

#78 - Decide on a governance model and publish it

Issue - State: open - Opened by niksirbi over 1 year ago
Labels: enhancement

#77 - Add affiliations, funders, and core developers to the Community section

Issue - State: open - Opened by niksirbi over 1 year ago - 2 comments
Labels: documentation

#76 - Add contributors page to the website's Community section

Issue - State: open - Opened by niksirbi over 1 year ago - 1 comment
Labels: documentation

#75 - Use the Sphinx external links extension

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: enhancement

#74 - Loading poses from LightningPose

Issue - State: closed - Opened by niksirbi over 1 year ago - 2 comments
Labels: enhancement, good first issue

#73 - Add a link to zulip alongside github in the docs.

Issue - State: closed - Opened by adamltyson over 1 year ago
Labels: enhancement

#72 - Updated docs with community section

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 4 comments

#71 - Ability to save multi-animal pose tracks to single-animal files

Pull Request - State: closed - Opened by DhruvSkyy over 1 year ago - 2 comments

#70 - Restructure docs informed by the diataxis framework

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: documentation

#69 - Create a glossary of common terms

Issue - State: open - Opened by niksirbi over 1 year ago - 11 comments
Labels: documentation

#68 - Ability to save multi-animal pose tracks to single-animal files

Pull Request - State: closed - Opened by DhruvSkyy over 1 year ago - 3 comments

#67 - Add `fetch_pose_data()` function

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: enhancement, good first issue

#66 - Add contributors page on the website

Issue - State: closed - Opened by niksirbi over 1 year ago - 2 comments
Labels: documentation

#65 - Refactor configure_logging

Pull Request - State: closed - Opened by lochhh over 1 year ago - 2 comments

#64 - Updated project URLs in pyproject.toml

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#63 - Refactor tests

Pull Request - State: closed - Opened by lochhh over 1 year ago - 4 comments

#62 - Changed documentation website URL

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 5 comments

#61 - Added calls to join zulip chat

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#60 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#59 - Better define the package's scope

Issue - State: closed - Opened by niksirbi over 1 year ago - 3 comments
Labels: documentation

#58 - Expand on "Related Packages" in the README.

Issue - State: open - Opened by niksirbi over 1 year ago - 3 comments
Labels: documentation

#57 - Fix indentation error in ValidPosesCSV validator

Pull Request - State: closed - Opened by lochhh over 1 year ago - 2 comments

#56 - [BUG] csv_file_contains_expected_levels does not check single-animal case

Issue - State: closed - Opened by lochhh over 1 year ago
Labels: bug

#55 - Smooth trajectories using a median filter

Issue - State: closed - Opened by niksirbi over 1 year ago - 2 comments
Labels: enhancement

#54 - Deprecate support for python 3.8

Pull Request - State: closed - Opened by DhruvSkyy over 1 year ago - 2 comments

#53 - initial implementation of Kalman filter class

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 1 comment

#52 - Add link to Zulipchat for user support

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: enhancement

#51 - Feature

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#50 - Overlay trajectories on video frames

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement, GUI

#49 - Napari plugin reader for videos

Issue - State: open - Opened by niksirbi over 1 year ago - 3 comments
Labels: enhancement, GUI

#48 - Napari plugin sample data

Issue - State: open - Opened by niksirbi over 1 year ago
Labels: enhancement, GUI

#47 - Visualise pose tracks as a napari Points layer

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement, GUI

#46 - Export pose tracks to SLEAP analysis file

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: enhancement

#45 - Export pose tracking data to zarr

Issue - State: open - Opened by niksirbi over 1 year ago - 2 comments
Labels: enhancement

#44 - Read SLEAP user-labelled instances

Issue - State: closed - Opened by lochhh over 1 year ago - 1 comment
Labels: enhancement

#43 - Refactor IO test

Issue - State: closed - Opened by lochhh over 1 year ago
Labels: enhancement

#42 - Stop supporting python3.8

Issue - State: closed - Opened by niksirbi over 1 year ago - 7 comments
Labels: enhancement

#41 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 3 comments

#40 - Apply NIU branding to the documentation website

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: documentation, enhancement

#39 - Ability to save multi-animal pose tracks to single-animal files

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement

#38 - Store video frames on GIN

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement, GUI

#37 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#36 - Cache test data in gh actions workflow

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#35 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#34 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#33 - Pose tracks io

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#32 - Used cruft to apply latest changes from cookiecutter template

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 1 comment

#31 - Make a napari frontend prototype

Issue - State: open - Opened by niksirbi over 1 year ago - 7 comments
Labels: enhancement, GUI

#30 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#29 - Include utils for 3D stereo calibration [Feature]

Issue - State: open - Opened by sfmig over 1 year ago
Labels: enhancement

#28 - Write a comprehensice contributing guide

Issue - State: closed - Opened by niksirbi over 1 year ago
Labels: enhancement

#27 - Add CHL as author in pyproject.toml

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#26 - Fix typo in DLC col name, add dataset, update test to catch HDF5ExtError

Pull Request - State: closed - Opened by lochhh over 1 year ago - 6 comments

#25 - Import sleap poses

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 3 comments

#24 - Consider replacing Pydantic with attrs

Issue - State: closed - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement

#23 - I/O support for the ndx-pose NWB extension

Issue - State: open - Opened by niksirbi over 1 year ago - 1 comment
Labels: enhancement

#22 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 2 comments

#21 - Abstract away data file names

Issue - State: open - Opened by niksirbi over 1 year ago
Labels: enhancement

#20 - Fetch test data from GIN

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 4 comments

#19 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#18 - Derive ground truth segmentation masks from bodyparts annotations [Feature]

Issue - State: open - Opened by sfmig over 1 year ago
Labels: enhancement

#17 - A converter from sleap/dlc annotations to bboxes annotations [Feature]

Issue - State: open - Opened by sfmig over 1 year ago
Labels: enhancement

#16 - Convert SLEAP labels to DLC format

Issue - State: open - Opened by niksirbi over 1 year ago
Labels: enhancement

#15 - Update badges in README.md

Pull Request - State: closed - Opened by niksirbi over 1 year ago - 2 comments

#14 - Release on conda

Issue - State: closed - Opened by adamltyson almost 2 years ago - 13 comments
Labels: enhancement

#13 - Ability to export poses in various formats

Issue - State: closed - Opened by niksirbi almost 2 years ago - 3 comments
Labels: enhancement

#12 - Define data model for representing points and trajectories

Issue - State: closed - Opened by niksirbi almost 2 years ago - 6 comments
Labels: core feature

#11 - updated to v2 NIU actions

Pull Request - State: closed - Opened by niksirbi almost 2 years ago - 1 comment

#10 - Smooth trajectories using Kalman filters

Issue - State: open - Opened by niksirbi almost 2 years ago - 7 comments
Labels: enhancement

#9 - Import dlc tracks

Pull Request - State: closed - Opened by niksirbi almost 2 years ago - 6 comments
Labels: core feature

#8 - Establish initial project structure

Pull Request - State: closed - Opened by niksirbi almost 2 years ago - 1 comment

#7 - Add Sphinx docs

Issue - State: closed - Opened by niksirbi almost 2 years ago - 1 comment
Labels: documentation

#6 - Update README

Issue - State: closed - Opened by niksirbi about 2 years ago
Labels: documentation

#5 - Plot occupancy heatmap

Issue - State: open - Opened by niksirbi about 2 years ago - 1 comment
Labels: core feature

#4 - Visualise pose tracks as a napari Tracks layer

Issue - State: open - Opened by niksirbi about 2 years ago - 4 comments
Labels: enhancement, GUI

#3 - Compute velocity and acceleration

Issue - State: closed - Opened by niksirbi about 2 years ago - 4 comments
Labels: core feature

#2 - Import data from pose estimation outputs

Issue - State: closed - Opened by niksirbi about 2 years ago - 1 comment
Labels: core feature

#1 - Restructure Python package according to SWC python-cookiecutter

Issue - State: closed - Opened by niksirbi about 2 years ago
Labels: enhancement

GitHub / neuroinformatics-unit/movement issues and pull requests