Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neuroinformatics-unit/movement issues and pull requests

#304 - Add example to convert file formats and changing keypoints

Pull Request - State: closed - Opened by Lauraschwarz 5 months ago - 2 comments
Labels: documentation

#303 - Add bbox centroid fix

Pull Request - State: closed - Opened by sfmig 5 months ago - 2 comments

#302 - Fix centroid imported from VIA file into bboxes dataset

Issue - State: closed - Opened by sfmig 5 months ago
Labels: bug

#301 - Add support for tracked segmentation masks?

Issue - State: open - Opened by sfmig 5 months ago - 4 comments

#300 - Check darts functionalities with a `movement` dataset

Issue - State: open - Opened by sfmig 5 months ago
Labels: enhancement

#299 - Add support for optical marker-based motion capture data

Issue - State: open - Opened by sfmig 5 months ago - 1 comment
Labels: enhancement

#298 - Document renaming of keypoints and individuals

Issue - State: closed - Opened by niksirbi 5 months ago - 1 comment
Labels: documentation, enhancement

#297 - Fix xarray FutureWarning about dims vs sizes

Pull Request - State: closed - Opened by niksirbi 5 months ago - 2 comments

#296 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 5 months ago - 2 comments

#295 - Update integration tests

Pull Request - State: closed - Opened by sfmig 5 months ago - 2 comments

#294 - General validator function for checking dimensions and coordinates

Pull Request - State: closed - Opened by niksirbi 5 months ago - 5 comments

#293 - Extend integration tests to bboxes datasets

Pull Request - State: closed - Opened by sfmig 5 months ago - 3 comments

#292 - A general-purpose validator for data array dimensions and coordinates

Issue - State: closed - Opened by niksirbi 5 months ago
Labels: enhancement

#291 - Restrict kinematics functions to position arrays in cartesian coordinates

Issue - State: closed - Opened by sfmig 5 months ago - 6 comments
Labels: enhancement

#290 - Constrain kinematics functions to only accept Cartesian space

Issue - State: closed - Opened by niksirbi 5 months ago - 1 comment
Labels: enhancement

#289 - Compute radial and tangential components of velocity / acceleration

Issue - State: open - Opened by sfmig 5 months ago - 1 comment
Labels: enhancement

#288 - Updated movement overview figure

Pull Request - State: closed - Opened by niksirbi 5 months ago - 2 comments

#287 - Small refactor to filtering tests

Pull Request - State: closed - Opened by sfmig 5 months ago - 2 comments

#286 - added new movement datasets figure, with caption

Pull Request - State: closed - Opened by niksirbi 5 months ago - 2 comments

#285 - Suggestion to refactor tests for vector module

Issue - State: open - Opened by sfmig 5 months ago
Labels: enhancement

#284 - Write a "quickstart" guide walking through a basic `movement` workflow

Issue - State: open - Opened by niksirbi 5 months ago
Labels: documentation, enhancement

#283 - Write a guide on how to visualise poses in napari

Issue - State: open - Opened by sfmig 5 months ago - 1 comment
Labels: documentation

#282 - Convenience functions for common plots?

Issue - State: open - Opened by sfmig 5 months ago - 1 comment
Labels: enhancement

#281 - Extend tests to cover bounding boxes datasets

Issue - State: closed - Opened by sfmig 5 months ago

#280 - Implement `compute_speed` and `compute_path_length`

Pull Request - State: closed - Opened by niksirbi 6 months ago - 4 comments

#279 - Document text-formatting

Issue - State: open - Opened by lochhh 6 months ago - 1 comment

#278 - Compute pairwise distances

Pull Request - State: closed - Opened by lochhh 6 months ago - 8 comments

#277 - Compute pairwise distances

Issue - State: closed - Opened by lochhh 6 months ago - 1 comment
Labels: enhancement

#276 - Compute Forward Vector

Pull Request - State: closed - Opened by b-peri 6 months ago - 4 comments

#275 - Remove `defaults` from test_and_deploy.yml

Pull Request - State: closed - Opened by sfmig 6 months ago - 5 comments

#274 - Suggestion to refactor vector tests

Pull Request - State: open - Opened by sfmig 6 months ago - 3 comments

#273 - Calibrate confidence scores

Issue - State: open - Opened by sfmig 6 months ago - 1 comment
Labels: enhancement

#272 - Revert "Pin pandas version for Py3.12 tests"

Pull Request - State: closed - Opened by sfmig 6 months ago - 2 comments

#271 - "Trial Averaged" Movements/Trajectories

Issue - State: open - Opened by jmdelahanty 6 months ago - 2 comments
Labels: enhancement

#270 - Refactor derivative

Pull Request - State: closed - Opened by lochhh 6 months ago - 3 comments

#269 - Configure intersphinx

Pull Request - State: closed - Opened by lochhh 6 months ago - 6 comments

#267 - Simplify and expand filtering tests for bboxes

Pull Request - State: closed - Opened by sfmig 6 months ago - 2 comments

#266 - Remove monospace formatting from 'movement' on website

Pull Request - State: closed - Opened by lochhh 6 months ago - 4 comments

#265 - Simplify and expand kinematic tests for bboxes

Pull Request - State: closed - Opened by sfmig 6 months ago - 4 comments

#264 - Update setup docs

Pull Request - State: closed - Opened by lochhh 6 months ago - 4 comments

#263 - Update pandas minimum requirement for Python 3.12

Issue - State: closed - Opened by lochhh 6 months ago - 2 comments
Labels: dependencies

#260 - CI runs every test job in all python environments

Issue - State: closed - Opened by sfmig 6 months ago - 6 comments
Labels: bug

#257 - Do we need a `validate()` method in move accessor?

Issue - State: closed - Opened by sfmig 6 months ago - 3 comments
Labels: enhancement

#256 - Suggestion to treat warnings as errors in sphinx-build

Pull Request - State: closed - Opened by sfmig 6 months ago - 9 comments

#253 - Qt widget for loading pose datasets as napari Points layers

Pull Request - State: closed - Opened by niksirbi 6 months ago - 9 comments

#250 - Add a bboxes dataset figure to "Getting started > The movement dataset"

Issue - State: closed - Opened by sfmig 6 months ago - 4 comments
Labels: documentation, enhancement

#249 - Document options for exporting datasets with derived variables

Issue - State: open - Opened by sfmig 7 months ago
Labels: enhancement

#247 - Add bounding boxes example

Issue - State: closed - Opened by sfmig 7 months ago
Labels: enhancement

#246 - Extend tests for bboxes datasets

Pull Request - State: closed - Opened by sfmig 7 months ago - 2 comments

#243 - Add utilities for vector magnitude and normalisation

Pull Request - State: closed - Opened by niksirbi 7 months ago - 4 comments

#242 - MMpose file validator

Pull Request - State: closed - Opened by ivanvrlg 7 months ago - 3 comments

#241 - Refactor validators to reduce code duplication between bboxes and poses

Issue - State: open - Opened by sfmig 7 months ago - 1 comment
Labels: enhancement

#240 - Add citation information

Pull Request - State: open - Opened by adamltyson 7 months ago

#239 - Egocentric coordinate transformation

Issue - State: open - Opened by talmo 7 months ago - 3 comments
Labels: enhancement

#238 - Compute Head Direction and Angular Head Velocity

Issue - State: closed - Opened by b-peri 7 months ago - 3 comments
Labels: enhancement

#237 - Distinguish between data meant for tests vs examples

Issue - State: open - Opened by niksirbi 7 months ago
Labels: enhancement

#236 - Reorder dimensions to start with space and time

Issue - State: closed - Opened by niksirbi 7 months ago - 1 comment
Labels: enhancement

#235 - Log to the console rather than `print()`

Issue - State: closed - Opened by lochhh 7 months ago - 5 comments
Labels: question

#234 - Auto-generate API index page

Pull Request - State: open - Opened by lochhh 7 months ago - 2 comments

#233 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 7 months ago - 2 comments

#232 - Archive on zenodo & add citation instructions

Issue - State: open - Opened by adamltyson 8 months ago
Labels: enhancement

#231 - Add bboxes sample data

Pull Request - State: closed - Opened by sfmig 8 months ago - 3 comments

#230 - Small edits to ValidBboxesDataset (1/4)

Pull Request - State: open - Opened by sfmig 8 months ago - 2 comments

#229 - Load bboxes dataset from VIA tracks file (3/4)

Pull Request - State: closed - Opened by sfmig 8 months ago - 6 comments

#228 - Kinetic Energy Decomposition

Issue - State: open - Opened by niksirbi 8 months ago - 3 comments
Labels: enhancement

#227 - Added ruff rule to check for numpy2.0 compatibility

Pull Request - State: closed - Opened by niksirbi 8 months ago - 2 comments

#226 - napari fails to launch on Ubuntu 24.04 LTS

Issue - State: closed - Opened by niksirbi 8 months ago - 1 comment
Labels: bug

#225 - Simple heuristics to identify frames of interaction

Issue - State: open - Opened by sfmig 8 months ago - 9 comments
Labels: enhancement

#224 - Make video download optional for sample datasets

Pull Request - State: closed - Opened by niksirbi 8 months ago - 3 comments

#223 - Make `_from_valid_data` public

Issue - State: closed - Opened by vigji 8 months ago - 2 comments
Labels: enhancement

#222 - Reorganising pytest fixtures

Issue - State: closed - Opened by sfmig 8 months ago
Labels: enhancement

#221 - Update python version in README.md

Pull Request - State: closed - Opened by niksirbi 8 months ago - 2 comments

#220 - Should we support loading untracked data?

Issue - State: open - Opened by sfmig 8 months ago - 1 comment
Labels: enhancement, question

#219 - Add a ValidVIAtracksCSV class (2/4)

Pull Request - State: open - Opened by sfmig 8 months ago - 2 comments

#218 - Create skeleton for napari plugin with collapsible widgets

Pull Request - State: open - Opened by niksirbi 8 months ago - 7 comments

#217 - Change default names for individuals if none are passed to pose dataset

Issue - State: open - Opened by sfmig 8 months ago - 5 comments
Labels: enhancement

#216 - Move logging.py inside utils

Pull Request - State: closed - Opened by niksirbi 8 months ago - 5 comments

#215 - Add missing __init__.py files

Pull Request - State: closed - Opened by niksirbi 8 months ago - 2 comments

#214 - Check log messages in tests

Issue - State: open - Opened by sfmig 8 months ago - 1 comment
Labels: enhancement

#213 - Re-organise API reference

Pull Request - State: closed - Opened by niksirbi 8 months ago - 2 comments

#212 - Use raw string for ASCII art in CLI entrypoint

Pull Request - State: closed - Opened by lochhh 8 months ago - 2 comments

#211 - DeprecationWarning for invalid escape sequence in ASCII art string

Issue - State: closed - Opened by lochhh 8 months ago
Labels: enhancement

#210 - Need to re-design dataset validators?

Issue - State: open - Opened by niksirbi 8 months ago - 5 comments
Labels: question

#209 - Refactor `filtering` module to take DataArrays as input

Pull Request - State: closed - Opened by lochhh 8 months ago - 3 comments

#208 - Update supported Python versions

Pull Request - State: closed - Opened by niksirbi 8 months ago - 2 comments

#207 - Refactor validators tests

Pull Request - State: closed - Opened by sfmig 8 months ago - 3 comments

#206 - Accessor `compute_` to only validate required `position` data variable

Pull Request - State: closed - Opened by lochhh 8 months ago - 2 comments

#205 - Provide a template / skeleton code for adding loaders for specific file formats

Issue - State: open - Opened by sfmig 8 months ago
Labels: enhancement

#204 - Refactor validators

Pull Request - State: closed - Opened by sfmig 8 months ago - 3 comments

#202 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 8 months ago - 2 comments

#201 - Add a ValidBboxesDataset class

Pull Request - State: closed - Opened by sfmig 8 months ago - 2 comments

#200 - Add Python v3.12 support

Issue - State: closed - Opened by niksirbi 8 months ago - 1 comment
Labels: enhancement

#199 - Consider renaming `load_poses` and `save_poses` to `load_dataset` and `save_dataset`

Issue - State: open - Opened by niksirbi 8 months ago - 1 comment
Labels: enhancement

#198 - Add from_mmp_file function

Pull Request - State: closed - Opened by ivanvrlg 8 months ago - 4 comments

#197 - Add the option for multiple views loading

Pull Request - State: closed - Opened by vigji 8 months ago - 16 comments

#196 - Support for multiple views?

Issue - State: closed - Opened by vigji 8 months ago - 11 comments
Labels: enhancement

#195 - Suggestion to rename ValidPosesCSV to ValidDeepLabCutCSV

Pull Request - State: closed - Opened by sfmig 9 months ago - 2 comments

#194 - Refactored modules related to input-output

Pull Request - State: closed - Opened by niksirbi 9 months ago - 5 comments